Wall clock time and date at job start Mon Mar 30 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47364 * 2 1 4 4 C 1.46497 * 120.00450 * 264.25181 * 3 2 1 5 5 C 1.50694 * 109.47150 * 265.48529 * 4 3 2 6 6 H 1.08003 * 120.00091 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00152 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47097 * 120.00266 * 9 7 5 12 12 H 1.48505 * 109.46601 * 240.00169 * 9 7 5 13 13 C 1.34781 * 119.99725 * 84.24659 * 3 2 1 14 14 O 1.21280 * 120.00114 * 5.85608 * 13 3 2 15 15 C 1.50694 * 119.99795 * 185.85202 * 13 3 2 16 16 H 1.09004 * 109.51301 * 312.44040 * 15 13 3 17 17 C 1.53149 * 109.50942 * 192.34943 * 15 13 3 18 18 C 1.53265 * 109.49506 * 170.59013 * 17 15 13 19 19 N 1.46470 * 108.79532 * 50.38518 * 18 17 15 20 20 C 1.36309 * 127.77694 * 162.80439 * 19 18 17 21 21 C 1.34846 * 106.69026 * 180.09268 * 20 19 18 22 22 N 1.34291 * 108.07484 * 359.97438 * 21 20 19 23 23 C 1.30095 * 109.20856 * 359.97438 * 22 21 20 24 24 C 1.51043 * 127.39037 * 180.02562 * 23 22 21 25 25 H 1.08992 * 109.47128 * 299.99801 * 1 2 3 26 26 H 1.09001 * 109.47020 * 60.00425 * 1 2 3 27 27 H 1.09006 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47731 * 239.99987 * 2 1 3 29 29 H 1.09002 * 109.47323 * 120.00292 * 2 1 3 30 30 H 1.09005 * 109.46929 * 25.48254 * 4 3 2 31 31 H 1.08994 * 109.47484 * 145.47963 * 4 3 2 32 32 H 0.96998 * 119.99914 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47125 * 290.60029 * 17 15 13 34 34 H 1.09005 * 109.46859 * 50.59100 * 17 15 13 35 35 H 1.08997 * 109.58743 * 170.16812 * 18 17 15 36 36 H 1.08996 * 109.58840 * 290.59193 * 18 17 15 37 37 H 1.08003 * 126.65485 * 0.10972 * 20 19 18 38 38 H 1.08005 * 125.96630 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.71443 * 44.36199 * 24 23 22 40 40 H 1.09003 * 109.75000 * 283.74090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3824 2.0295 -1.2623 5 6 3.8628 1.8752 -1.4976 6 1 4.4718 1.3474 -0.7785 7 6 4.4400 2.4079 -2.6308 8 7 3.6986 3.0511 -3.5062 9 14 6.2753 2.2171 -2.9221 10 1 6.8789 1.4590 -1.7969 11 1 6.5011 1.4810 -4.1919 12 1 6.9046 3.5594 -3.0094 13 6 2.1327 2.0555 1.1614 14 8 1.9336 1.4877 2.2144 15 6 2.5079 3.5150 1.1515 16 1 3.3639 3.6663 0.4937 17 6 2.8694 3.9598 2.5716 18 6 3.4730 5.3679 2.5285 19 7 2.5861 6.2380 1.7528 20 6 2.5628 7.6007 1.7313 21 6 1.5825 7.9578 0.8770 22 7 1.0245 6.8371 0.3911 23 6 1.6200 5.8031 0.9094 24 6 1.3208 4.3458 0.6480 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8338 1.5640 -2.0812 31 1 2.1308 3.0889 -1.2124 32 1 4.1045 3.4255 -4.3036 33 1 1.9713 3.9683 3.1893 34 1 3.5955 3.2663 2.9959 35 1 3.5691 5.7555 3.5427 36 1 4.4540 5.3306 2.0549 37 1 3.2050 8.2655 2.2900 38 1 1.2959 8.9688 0.6272 39 1 1.1856 4.1843 -0.4214 40 1 0.4159 4.0542 1.1812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330523474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:26 Heat of formation + Delta-G solvation = -0.130514 kcal Electronic energy + Delta-G solvation = -22401.920581 eV Core-core repulsion = 19216.589331 eV Total energy + Delta-G solvation = -3185.331250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.25333 -41.02251 -37.36078 -36.84662 -34.76863 -34.33134 -31.98947 -30.76668 -29.56549 -28.84512 -25.88888 -24.90270 -24.70753 -22.92045 -22.28599 -20.17660 -19.68894 -18.64374 -18.17200 -17.71373 -17.18333 -16.78614 -16.32018 -16.02832 -15.52644 -15.12263 -14.89697 -14.71208 -14.63313 -14.43314 -14.08799 -13.87672 -13.44622 -13.27769 -13.11849 -12.89600 -12.84027 -12.64376 -12.59625 -12.20605 -12.14742 -12.08153 -11.74779 -11.66726 -10.92930 -10.74322 -10.55840 -10.51014 -9.47002 -9.24034 -8.21614 -6.36647 1.13909 1.37652 1.41075 1.51074 1.67168 1.90588 2.18839 2.26131 2.42071 3.08459 3.27167 3.53962 3.59243 3.66206 4.02424 4.16114 4.19642 4.27216 4.29493 4.41402 4.51227 4.53639 4.57192 4.62160 4.68121 4.81291 4.85925 4.89462 4.99955 5.04942 5.13281 5.24713 5.33685 5.40908 5.64787 5.85040 5.90346 6.04998 6.24338 6.53966 6.80171 7.19185 7.26433 7.38479 8.83568 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.007451 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.303644 B = 3756.942040 C = 4953.116280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.245 3.755 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.525 3.475 14 O -0.586 6.586 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.106 4.106 18 C 0.104 3.896 19 N -0.454 5.454 20 C -0.041 4.041 21 C -0.063 4.063 22 N -0.529 5.529 23 C 0.193 3.807 24 C -0.014 4.014 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.217 0.783 38 H 0.189 0.811 39 H 0.085 0.915 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 4.393 10.880 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.327 5.327 4 C 0.125 3.875 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.314 3.686 14 O -0.468 6.468 15 C -0.125 4.125 16 H 0.114 0.886 17 C -0.144 4.144 18 C -0.016 4.016 19 N -0.137 5.137 20 C -0.175 4.175 21 C -0.210 4.210 22 N -0.249 5.249 23 C -0.070 4.070 24 C -0.053 4.053 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.233 0.767 38 H 0.206 0.794 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.087 4.050 10.757 11.545 hybrid contribution 1.466 -0.019 -0.373 1.513 sum 0.379 4.031 10.384 11.145 Atomic orbital electron populations 1.22025 0.94718 1.03093 1.01313 1.21438 0.95106 0.82558 1.02399 1.48271 1.62436 1.14122 1.07865 1.19262 0.94549 0.93534 0.80181 1.21698 0.94159 1.36171 1.06450 0.92823 1.25651 1.02244 0.94495 0.95500 1.70026 1.37340 1.36682 1.11558 0.85563 0.80319 0.77929 0.78240 1.19186 1.20446 1.20536 1.20417 0.76146 0.89051 0.83025 1.90570 1.53855 1.70950 1.31442 1.21291 0.99827 0.91451 0.99973 0.88643 1.21656 1.03052 0.95287 0.94383 1.22268 0.92813 0.88656 0.97900 1.45646 1.27370 1.07197 1.33486 1.23186 1.04752 0.83182 1.06363 1.22855 0.98867 0.97976 1.01288 1.69974 1.29514 0.98794 1.26624 1.23056 0.92244 0.96337 0.95361 1.19977 0.97652 0.84962 1.02735 0.93623 0.92931 0.89401 0.90385 0.91321 0.96133 0.94516 0.92413 0.90367 0.88137 0.85124 0.88601 0.76650 0.79407 0.89713 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 10.19 71.98 0.73 -3.86 16 2 C 0.11 3.82 6.10 86.38 0.53 4.35 16 3 N -0.60 -24.48 2.48 -826.17 -2.05 -26.52 16 4 C 0.25 11.55 4.77 85.63 0.41 11.96 16 5 C -0.55 -27.95 8.81 25.60 0.23 -27.72 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 1.14 5.46 84.66 0.46 1.60 16 8 N -0.92 -50.77 13.29 21.45 0.28 -50.48 16 9 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.52 20.76 6.79 87.65 0.60 21.36 16 14 O -0.59 -24.46 15.66 -3.03 -0.05 -24.50 16 15 C -0.10 -3.64 1.70 -11.36 -0.02 -3.65 16 16 H 0.10 3.81 6.99 -2.39 -0.02 3.79 16 17 C -0.11 -2.85 4.59 30.73 0.14 -2.71 16 18 C 0.10 2.25 6.98 86.47 0.60 2.85 16 19 N -0.45 -12.74 3.13 -513.83 -1.61 -14.35 16 20 C -0.04 -1.00 11.64 83.22 0.97 -0.03 16 21 C -0.06 -1.84 11.87 83.54 0.99 -0.84 16 22 N -0.53 -19.92 11.24 -187.51 -2.11 -22.03 16 23 C 0.19 6.82 7.65 138.23 1.06 7.88 16 24 C -0.01 -0.51 5.36 30.09 0.16 -0.35 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.08 2.74 8.03 -2.38 -0.02 2.72 16 29 H 0.07 2.44 7.52 -2.39 -0.02 2.42 16 30 H 0.02 1.03 8.04 -2.38 -0.02 1.01 16 31 H 0.04 1.81 4.50 -2.39 -0.01 1.80 16 32 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 34 H 0.10 2.59 8.00 -2.38 -0.02 2.58 16 35 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.19 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.08 3.44 5.89 -2.39 -0.01 3.42 16 40 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16 Total: -1.00 -66.08 326.73 4.38 -61.70 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.03 Total: 21.90 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.86 Total: 10.83 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -5.48 Total: -113.39 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -66.08 4.38 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330523474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.571 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds