Wall clock time and date at job start Mon Mar 30 2020 20:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40293 * 126.09313 * 2 1 4 4 C 1.31068 * 108.26984 * 180.23314 * 3 2 1 5 5 C 1.39304 * 108.07643 * 359.56712 * 4 3 2 6 6 C 1.34324 * 126.08735 * 179.70939 * 2 1 3 7 7 C 1.50826 * 128.03744 * 359.87407 * 6 2 1 8 8 C 1.53364 * 108.37961 * 196.61706 * 7 6 2 9 9 C 1.53113 * 109.50849 * 310.05401 * 8 7 6 10 10 C 1.50836 * 127.89681 * 180.17742 * 5 4 3 11 11 H 1.09000 * 109.68978 * 76.90973 * 10 5 4 12 12 N 1.46502 * 109.68365 * 316.38846 * 10 5 4 13 13 C 1.34784 * 119.99512 * 85.00067 * 12 10 5 14 14 O 1.21283 * 119.99835 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.99830 * 179.97438 * 13 12 10 16 16 C 1.53001 * 109.47055 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.46892 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99792 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00090 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00141 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46703 * 89.99819 * 21 19 17 23 23 H 1.48495 * 109.46905 * 209.99964 * 21 19 17 24 24 H 1.48501 * 109.46722 * 329.99855 * 21 19 17 25 25 H 1.08999 * 109.46852 * 270.29527 * 1 2 3 26 26 H 1.09004 * 109.46731 * 30.29023 * 1 2 3 27 27 H 1.09001 * 109.47307 * 150.29070 * 1 2 3 28 28 H 1.08002 * 125.96490 * 179.83774 * 4 3 2 29 29 H 1.08993 * 109.68310 * 76.89379 * 7 6 2 30 30 H 1.09004 * 109.68247 * 316.33388 * 7 6 2 31 31 H 1.09001 * 109.46243 * 190.04727 * 8 7 6 32 32 H 1.08994 * 109.46123 * 70.06613 * 8 7 6 33 33 H 1.08996 * 109.46369 * 310.26605 * 9 8 7 34 34 H 1.09003 * 109.45512 * 190.28040 * 9 8 7 35 35 H 0.96993 * 120.00753 * 265.00925 * 12 10 5 36 36 H 1.08995 * 109.47622 * 300.00688 * 15 13 12 37 37 H 1.09007 * 109.46816 * 60.00798 * 15 13 12 38 38 H 1.08992 * 109.47103 * 300.00187 * 16 15 13 39 39 H 1.08993 * 109.46953 * 60.00541 * 16 15 13 40 40 H 0.97000 * 120.00078 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5393 0.7325 -0.0051 5 6 3.5455 -0.6605 0.0016 6 6 2.2563 -1.0855 0.0055 7 6 1.8437 -2.5362 0.0155 8 6 3.0536 -3.3802 0.4349 9 6 4.2701 -2.9832 -0.4059 10 6 4.7399 -1.5817 0.0030 11 1 5.1751 -1.6172 1.0017 12 7 5.7382 -1.0968 -0.9533 13 6 6.6286 -0.1566 -0.5793 14 8 6.6036 0.2876 0.5490 15 6 7.6559 0.3418 -1.5628 16 6 8.5366 1.3965 -0.8898 17 6 9.5635 1.8954 -1.8735 18 1 9.5860 1.4995 -2.8780 19 6 10.4749 2.8565 -1.4907 20 7 10.4485 3.3375 -0.2669 21 14 11.7484 3.4744 -2.7098 22 1 11.2018 4.6416 -3.4475 23 1 12.9760 3.8808 -1.9798 24 1 12.0794 2.3920 -3.6710 25 1 -0.3633 0.0053 1.0277 26 1 -0.3633 0.8874 -0.5184 27 1 -0.3634 -0.8926 -0.5093 28 1 4.4107 1.3705 -0.0089 29 1 1.5177 -2.8320 -0.9816 30 1 1.0304 -2.6817 0.7265 31 1 2.8322 -4.4358 0.2775 32 1 3.2688 -3.2075 1.4894 33 1 3.9973 -2.9814 -1.4611 34 1 5.0753 -3.6990 -0.2399 35 1 5.7584 -1.4522 -1.8556 36 1 8.2759 -0.4911 -1.8941 37 1 7.1516 0.7838 -2.4222 38 1 7.9168 2.2295 -0.5582 39 1 9.0408 0.9543 -0.0306 40 1 11.0894 4.0139 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330893236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:39 Heat of formation + Delta-G solvation = -5.191442 kcal Electronic energy + Delta-G solvation = -21351.774171 eV Core-core repulsion = 18166.223463 eV Total energy + Delta-G solvation = -3185.550708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.59805 -40.53383 -37.76402 -35.57257 -35.20560 -34.06089 -32.92236 -30.53503 -30.03136 -27.56164 -27.47724 -24.59188 -23.22996 -22.92373 -21.77962 -21.04211 -19.68605 -18.76225 -17.96749 -17.36529 -17.02109 -16.50098 -16.37193 -16.15955 -15.61803 -15.06772 -14.73809 -14.68993 -14.41580 -14.17749 -13.90340 -13.88596 -13.67098 -13.32976 -13.20323 -12.83994 -12.78816 -12.48007 -12.17094 -11.89296 -11.79399 -11.65744 -11.60959 -11.53974 -11.28534 -10.63255 -10.56097 -10.23138 -10.04057 -9.27308 -8.16868 -6.31032 0.84572 1.41785 1.45052 1.55906 1.60304 1.64945 1.83909 2.38836 2.52335 3.15870 3.58460 3.59398 3.86571 4.06241 4.12593 4.21470 4.24556 4.39294 4.43591 4.53096 4.57656 4.59558 4.65340 4.67518 4.72929 4.87484 4.97167 5.12749 5.18433 5.25586 5.27245 5.40949 5.50431 5.57996 5.65958 5.67436 5.87468 6.17380 6.19441 6.66292 6.73532 6.87803 7.38891 7.46722 8.95817 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.003591 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.115175 B = 7795.126812 C = 8351.105090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 N -0.345 5.345 4 C 0.049 3.951 5 C -0.272 4.272 6 C 0.102 3.898 7 C -0.050 4.050 8 C -0.106 4.106 9 C -0.117 4.117 10 C 0.221 3.779 11 H 0.060 0.940 12 N -0.710 5.710 13 C 0.512 3.488 14 O -0.585 6.585 15 C -0.120 4.120 16 C 0.044 3.956 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.254 1.254 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.105 0.895 37 H 0.098 0.902 38 H -0.021 1.021 39 H -0.017 1.017 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 -19.203 -3.795 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.151 5.151 3 N -0.168 5.168 4 C -0.134 4.134 5 C -0.284 4.284 6 C -0.030 4.030 7 C -0.089 4.089 8 C -0.145 4.145 9 C -0.155 4.155 10 C 0.115 3.885 11 H 0.078 0.922 12 N -0.362 5.362 13 C 0.300 3.700 14 O -0.464 6.464 15 C -0.160 4.160 16 C 0.006 3.994 17 C -0.581 4.581 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.177 1.177 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.251 0.749 36 H 0.123 0.877 37 H 0.116 0.884 38 H -0.003 1.003 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.630 -17.746 -2.887 29.692 hybrid contribution 1.585 0.746 -0.252 1.769 sum -22.045 -17.000 -3.139 28.015 Atomic orbital electron populations 1.22254 0.71781 1.06198 1.04738 1.48653 1.07868 1.02897 1.55711 1.77472 1.01927 1.09444 1.27920 1.23406 0.94417 0.96230 0.99357 1.20441 0.95721 0.93125 1.19122 1.21598 0.89718 0.92518 0.99116 1.20620 0.99798 0.83512 1.04937 1.21545 0.92295 1.01005 0.99632 1.21872 0.99379 0.92411 1.01793 1.19289 0.84063 0.92475 0.92665 0.92231 1.45953 1.32278 1.41420 1.16579 1.21264 0.81839 0.78379 0.88515 1.90659 1.73772 1.58588 1.23399 1.21631 0.95997 1.00581 0.97766 1.18666 0.93370 0.92656 0.94716 1.21728 1.15191 1.22250 0.98894 0.90649 1.26157 1.00375 0.96759 0.97252 1.70190 1.37862 1.29798 1.19984 0.85314 0.77509 0.78938 0.78435 1.19845 1.21115 1.17745 0.89497 0.89415 0.85839 0.83645 0.86949 0.87683 0.86826 0.92170 0.89386 0.89479 0.74869 0.87659 0.88401 1.00272 0.99832 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.32 127.77 1.45 2.54 16 2 N -0.37 -8.89 4.00 -355.99 -1.42 -10.31 16 3 N -0.35 -12.00 12.59 -57.27 -0.72 -12.72 16 4 C 0.05 1.84 11.32 85.06 0.96 2.81 16 5 C -0.27 -7.93 5.60 -20.14 -0.11 -8.05 16 6 C 0.10 2.19 6.73 41.64 0.28 2.47 16 7 C -0.05 -0.47 5.83 30.01 0.17 -0.30 16 8 C -0.11 -1.02 5.90 30.75 0.18 -0.84 16 9 C -0.12 -1.65 5.39 30.75 0.17 -1.48 16 10 C 0.22 5.77 2.81 44.41 0.12 5.90 16 11 H 0.06 1.93 7.61 -2.39 -0.02 1.91 16 12 N -0.71 -20.23 5.03 -445.29 -2.24 -22.47 16 13 C 0.51 20.64 7.06 87.66 0.62 21.26 16 14 O -0.58 -29.71 14.75 -3.04 -0.04 -29.76 16 15 C -0.12 -5.03 5.64 29.85 0.17 -4.86 16 16 C 0.04 2.51 4.26 29.85 0.13 2.64 16 17 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 18 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 19 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 20 N -0.94 -61.13 13.29 21.45 0.28 -60.85 16 21 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.12 0.53 7.90 -2.39 -0.02 0.52 16 28 H 0.15 6.37 6.92 -2.91 -0.02 6.35 16 29 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 33 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.41 8.65 8.60 -92.71 -0.80 7.86 16 36 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 38 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 39 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 40 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -88.48 331.55 2.96 -85.52 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.24 Total: 12.67 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.83 Total: -9.51 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -4.10 Total: -106.35 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.04 Total: -29.76 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -88.48 2.96 -85.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330893236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.331 kcal (2) G-P(sol) polarization free energy of solvation -88.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds