Wall clock time and date at job start Mon Mar 30 2020 20:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47139 * 2 1 4 4 C 1.50697 * 109.47170 * 120.00174 * 2 1 3 5 5 H 1.08005 * 120.00424 * 119.99969 * 4 2 1 6 6 C 1.37881 * 120.00063 * 299.99808 * 4 2 1 7 7 N 1.31513 * 119.99786 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99737 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46946 * 90.00417 * 8 6 4 10 10 H 1.48502 * 109.47205 * 209.99760 * 8 6 4 11 11 H 1.48494 * 109.47207 * 330.00328 * 8 6 4 12 12 N 1.46503 * 109.46943 * 240.00028 * 2 1 3 13 13 C 1.34776 * 120.00087 * 85.00127 * 12 2 1 14 14 O 1.21629 * 119.99749 * 354.94461 * 13 12 2 15 15 C 1.47156 * 119.99925 * 174.95104 * 13 12 2 16 16 C 1.38402 * 126.88811 * 5.48171 * 15 13 12 17 17 C 1.39680 * 105.36401 * 180.02562 * 16 15 13 18 18 N 1.30865 * 107.85639 * 359.97438 * 17 16 15 19 19 N 1.28444 * 110.92983 * 359.72298 * 18 17 16 20 20 C 1.46497 * 125.19274 * 180.27692 * 19 18 17 21 21 C 1.54266 * 110.03560 * 62.68419 * 20 19 18 22 22 C 1.54884 * 104.19780 * 217.11039 * 21 20 19 23 23 C 1.54884 * 102.75091 * 37.94254 * 22 21 20 24 24 C 1.53880 * 110.03108 * 305.51911 * 20 19 18 25 25 H 1.08998 * 109.47623 * 59.99662 * 1 2 3 26 26 H 1.09001 * 109.46972 * 299.99796 * 1 2 3 27 27 H 1.09007 * 109.47447 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00159 * 264.99912 * 12 2 1 30 30 H 1.07998 * 127.31975 * 0.02562 * 16 15 13 31 31 H 1.07990 * 126.07051 * 180.02562 * 17 16 15 32 32 H 1.09000 * 110.01814 * 184.12725 * 20 19 18 33 33 H 1.09006 * 110.48434 * 335.78799 * 21 20 19 34 34 H 1.09004 * 110.48871 * 98.42503 * 21 20 19 35 35 H 1.09000 * 110.75286 * 279.62192 * 22 21 20 36 36 H 1.09009 * 110.75642 * 156.26020 * 22 21 20 37 37 H 1.09007 * 110.48670 * 203.38178 * 23 22 21 38 38 H 1.08998 * 110.60362 * 80.79537 * 23 22 21 39 39 H 1.08993 * 110.03129 * 238.56562 * 24 20 19 40 40 H 1.08995 * 110.02891 * 359.95151 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6260 1.2798 2.6541 9 1 -0.8020 0.8745 2.6994 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.7719 1.1360 -2.4362 15 6 2.7412 -0.6808 -3.5291 16 6 3.1161 -2.0092 -3.6312 17 6 3.6230 -2.1522 -4.9249 18 7 3.5425 -0.9887 -5.5184 19 7 3.0277 -0.1094 -4.7364 20 6 2.7886 1.2934 -5.0844 21 6 1.7770 1.3849 -6.2455 22 6 2.2877 2.5703 -7.1017 23 6 3.8261 2.4047 -7.0319 24 6 4.0914 1.9419 -5.5843 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9032 -0.5281 4.4375 29 1 2.2490 -1.6318 -1.1527 30 1 3.0341 -2.7728 -2.8720 31 1 4.0116 -3.0617 -5.3586 32 1 2.4115 1.8342 -4.2163 33 1 1.7810 0.4638 -6.8284 34 1 0.7769 1.5922 -5.8648 35 1 1.9813 3.5214 -6.6663 36 1 1.9361 2.4839 -8.1299 37 1 4.3214 3.3563 -7.2249 38 1 4.1631 1.6494 -7.7418 39 1 4.3461 2.7978 -4.9595 40 1 4.9017 1.2131 -5.5672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332382173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:53 Heat of formation + Delta-G solvation = 34.553002 kcal Electronic energy + Delta-G solvation = -21786.734290 eV Core-core repulsion = 18602.907030 eV Total energy + Delta-G solvation = -3183.827260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43541 -38.87667 -38.02314 -35.15157 -32.67446 -32.11851 -31.11268 -29.34562 -28.94228 -27.65177 -25.25239 -23.47990 -22.15875 -21.22829 -20.90609 -19.83177 -19.36814 -17.98513 -16.57373 -16.00185 -15.69764 -15.61116 -15.46388 -14.74374 -14.33024 -14.02602 -13.76486 -13.54201 -13.51494 -12.96416 -12.86256 -12.24334 -11.95572 -11.91014 -11.71217 -11.39297 -11.35563 -11.30242 -11.05219 -10.83936 -10.78062 -10.60284 -10.23601 -9.77821 -9.35004 -9.30749 -9.03732 -8.86886 -8.80278 -8.26312 -6.24892 -4.28222 1.52480 2.52623 2.76032 3.20362 3.32520 3.35797 3.62161 3.80438 4.27581 4.28786 4.37802 4.73075 4.82956 5.01807 5.09624 5.20191 5.24283 5.28962 5.34610 5.41201 5.45731 5.66392 5.68132 5.73660 5.84083 5.90288 5.97727 6.09986 6.14280 6.25375 6.33625 6.49576 6.63727 6.78333 6.92304 7.10361 7.17484 7.42595 8.01968 8.23421 8.42416 8.65915 8.77690 9.34798 10.87130 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.004540 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.806070 B = 6165.802266 C = 6810.032577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.680 5.680 13 C 0.578 3.422 14 O -0.557 6.557 15 C -0.027 4.027 16 C -0.195 4.195 17 C -0.009 4.009 18 N -0.283 5.283 19 N -0.251 5.251 20 C 0.129 3.871 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.131 4.131 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.268 0.732 29 H 0.399 0.601 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 2.187 -18.856 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.136 3.864 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.328 5.328 13 C 0.363 3.637 14 O -0.438 6.438 15 C -0.156 4.156 16 C -0.224 4.224 17 C -0.185 4.185 18 N -0.115 5.115 19 N -0.039 5.039 20 C 0.029 3.971 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.169 4.169 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.178 0.822 31 H 0.200 0.800 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.264 3.701 -19.684 20.069 hybrid contribution -0.608 -0.346 1.126 1.326 sum 0.657 3.354 -18.558 18.870 Atomic orbital electron populations 1.22456 0.99008 1.01074 0.99483 1.19183 0.90387 0.94554 0.82236 0.93247 1.21012 1.33512 1.14616 0.88389 0.90010 1.24813 0.95435 0.96691 0.95466 1.69864 1.44719 1.40015 0.98074 0.86882 0.80591 0.83568 0.77489 1.20215 1.22086 1.18689 1.45965 1.63947 1.13961 1.08904 1.17002 0.78887 0.85727 0.82134 1.90664 1.51737 1.17474 1.83886 1.21731 1.09371 0.94318 0.90198 1.22282 1.05948 0.94911 0.99218 1.23495 1.05386 0.96086 0.93548 1.73050 1.16580 0.99343 1.22535 1.45890 1.41405 1.09468 1.07087 1.22845 0.96955 0.75570 1.01740 1.22716 0.98352 0.99990 0.95684 1.22463 0.95504 0.98037 0.99885 1.22321 0.96044 1.01215 0.96140 1.22476 0.96509 1.00851 0.97034 0.94346 0.93308 0.92659 0.92200 0.76612 0.82246 0.80049 0.84179 0.90300 0.90591 0.90941 0.91000 0.91307 0.91145 0.90407 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.96 37.16 0.33 -3.22 16 2 C 0.24 5.60 2.11 -69.08 -0.15 5.45 16 3 H 0.05 1.26 6.71 -51.93 -0.35 0.91 16 4 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 8 Si 0.89 21.32 24.37 -169.99 -4.14 17.18 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 12 N -0.68 -13.50 5.06 -56.10 -0.28 -13.78 16 13 C 0.58 11.21 7.75 -12.64 -0.10 11.11 16 14 O -0.56 -12.01 14.08 5.25 0.07 -11.93 16 15 C -0.03 -0.46 6.96 -82.06 -0.57 -1.03 16 16 C -0.19 -2.73 10.50 -38.98 -0.41 -3.14 16 17 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 18 N -0.28 -4.15 11.04 30.59 0.34 -3.81 16 19 N -0.25 -3.88 3.06 -49.61 -0.15 -4.04 16 20 C 0.13 1.79 3.58 -66.81 -0.24 1.55 16 21 C -0.13 -1.51 6.51 -25.08 -0.16 -1.68 16 22 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 23 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 24 C -0.13 -1.53 6.47 -25.61 -0.17 -1.70 16 25 H 0.04 0.80 8.09 -51.93 -0.42 0.37 16 26 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.40 7.01 7.57 -40.82 -0.31 6.70 16 30 H 0.16 1.86 7.59 -52.49 -0.40 1.47 16 31 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.14 2.23 5.40 -51.93 -0.28 1.95 16 33 H 0.08 0.98 7.77 -51.93 -0.40 0.57 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.99 7.62 -51.93 -0.40 0.60 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -30.64 320.82 -6.70 -37.34 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.71 Total: 7.40 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.43 Total: -8.00 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.68 Total: -46.82 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.64 -6.70 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332382173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.889 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds