Wall clock time and date at job start Mon Mar 30 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47148 * 2 1 4 4 C 1.34263 * 125.75192 * 125.26040 * 3 2 1 5 5 C 1.38048 * 107.41557 * 180.14608 * 4 3 2 6 6 C 1.47420 * 126.41353 * 179.87708 * 5 4 3 7 7 O 1.21605 * 120.00444 * 328.08681 * 6 5 4 8 8 N 1.34780 * 120.00091 * 148.09507 * 6 5 4 9 9 C 1.46925 * 120.62990 * 353.92202 * 8 6 5 10 10 C 1.53194 * 108.89630 * 233.51939 * 9 8 6 11 11 C 1.53081 * 109.28738 * 305.57806 * 10 9 8 12 12 C 1.50701 * 109.43430 * 181.23714 * 11 10 9 13 13 H 1.08009 * 119.99770 * 239.79225 * 12 11 10 14 14 C 1.37874 * 120.00525 * 59.79416 * 12 11 10 15 15 N 1.31512 * 120.00038 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00370 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46841 * 89.99701 * 16 14 12 18 18 H 1.48498 * 109.47399 * 210.00260 * 16 14 12 19 19 H 1.48508 * 109.46953 * 330.00079 * 16 14 12 20 20 C 1.53033 * 109.66245 * 61.15324 * 11 10 9 21 21 C 1.46925 * 120.63429 * 173.90159 * 8 6 5 22 22 C 1.41296 * 107.16747 * 359.61480 * 5 4 3 23 23 N 1.30442 * 108.02475 * 0.24104 * 22 5 4 24 24 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46951 * 300.00022 * 1 2 3 26 26 H 1.08997 * 109.47401 * 59.99703 * 1 2 3 27 27 H 1.08997 * 109.47275 * 240.00235 * 2 1 3 28 28 H 1.09002 * 109.46741 * 120.00075 * 2 1 3 29 29 H 1.07995 * 126.29587 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.58711 * 353.37330 * 9 8 6 31 31 H 1.08999 * 109.59039 * 113.65493 * 9 8 6 32 32 H 1.08995 * 109.49577 * 65.38037 * 10 9 8 33 33 H 1.08991 * 109.49992 * 185.48574 * 10 9 8 34 34 H 1.08997 * 109.34700 * 301.12110 * 11 10 9 35 35 H 0.96996 * 120.00716 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.50175 * 178.74171 * 20 11 10 37 37 H 1.09006 * 109.52484 * 58.66310 * 20 11 10 38 38 H 1.09002 * 109.58793 * 246.20359 * 21 8 6 39 39 H 1.09008 * 109.58575 * 6.47752 * 21 8 6 40 40 H 1.08000 * 125.98328 * 180.20687 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8729 1.9112 0.8897 5 6 3.0708 3.2311 0.5370 6 6 3.9322 4.2034 1.2339 7 8 4.0845 4.1275 2.4380 8 7 4.5511 5.1767 0.5366 9 6 4.4852 5.2037 -0.9309 10 6 5.9096 5.2742 -1.4902 11 6 6.6385 6.4683 -0.8686 12 6 8.0303 6.5587 -1.4394 13 1 8.8874 6.4944 -0.7853 14 6 8.2096 6.7236 -2.7964 15 7 7.1660 6.8015 -3.5930 16 14 9.9349 6.8364 -3.5038 17 1 10.4149 5.4763 -3.8570 18 1 9.9161 7.6865 -4.7212 19 1 10.8451 7.4362 -2.4952 20 6 6.7204 6.2884 0.6489 21 6 5.3039 6.2312 1.2294 22 6 2.2977 3.4739 -0.6205 23 7 1.6771 2.3692 -0.9304 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3214 1.3995 1.7284 30 1 3.9955 4.2991 -1.2915 31 1 3.9215 6.0784 -1.2554 32 1 6.4431 4.3563 -1.2436 33 1 5.8699 5.3928 -2.5730 34 1 6.0923 7.3834 -1.0970 35 1 7.2921 6.9178 -4.5476 36 1 7.2592 7.1289 1.0864 37 1 7.2452 5.3609 0.8780 38 1 4.8092 7.1911 1.0812 39 1 5.3522 6.0058 2.2949 40 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334333376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:25 Heat of formation + Delta-G solvation = 38.482208 kcal Electronic energy + Delta-G solvation = -21653.244758 eV Core-core repulsion = 18469.587882 eV Total energy + Delta-G solvation = -3183.656877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38275 -39.15642 -36.62898 -34.71617 -33.42077 -31.39678 -30.56925 -30.19284 -29.23115 -26.20953 -24.32236 -23.47477 -22.30857 -21.66341 -20.64558 -19.72175 -18.51818 -17.20881 -16.45340 -15.94817 -15.53163 -15.43683 -14.68142 -14.52679 -14.34339 -14.05259 -13.34182 -13.08200 -12.94483 -12.68801 -12.61376 -12.48179 -12.39597 -12.16800 -11.74098 -11.50711 -11.20373 -10.92575 -10.86293 -10.61778 -10.34133 -10.06890 -9.65941 -9.51645 -9.36834 -9.12801 -8.87709 -8.56928 -8.34737 -7.88409 -6.00433 -4.06331 1.65978 2.29599 2.34067 3.29831 3.36858 3.40269 3.45994 3.77103 4.26597 4.43049 4.62752 4.72924 4.83741 4.91796 5.15916 5.29114 5.30551 5.36228 5.55226 5.65723 5.74824 5.80686 5.90011 6.04141 6.14023 6.20932 6.39383 6.45591 6.53706 6.71529 6.81390 6.96696 7.10124 7.22170 7.34329 7.57338 7.70061 7.96098 8.02756 8.08561 8.43660 8.69254 8.97013 9.58524 11.04957 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.004216 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.499397 B = 6639.353483 C = 7324.882619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.366 5.366 4 C 0.115 3.885 5 C -0.279 4.279 6 C 0.590 3.410 7 O -0.566 6.566 8 N -0.594 5.594 9 C 0.095 3.905 10 C -0.122 4.122 11 C 0.048 3.952 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.113 3.887 22 C 0.082 3.918 23 N -0.299 5.299 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.183 0.817 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 -11.109 5.575 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.146 5.146 4 C -0.036 4.036 5 C -0.294 4.294 6 C 0.378 3.622 7 O -0.447 6.447 8 N -0.325 5.325 9 C -0.027 4.027 10 C -0.161 4.161 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.161 4.161 21 C -0.009 4.009 22 C -0.105 4.105 23 N -0.119 5.119 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.200 0.800 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.665 -11.825 5.176 18.084 hybrid contribution 1.592 0.425 -0.050 1.649 sum -11.073 -11.400 5.126 16.699 Atomic orbital electron populations 1.22053 0.93595 1.02871 1.03771 1.21763 0.96260 0.77216 1.04072 1.48559 1.34645 1.10492 1.20873 1.22864 0.92334 0.93761 0.94616 1.20305 1.10699 0.95493 1.02908 1.17290 0.78812 0.80120 0.85944 1.90702 1.65235 1.74319 1.14444 1.48010 1.50190 1.26460 1.07886 1.22346 1.01189 1.01116 0.78092 1.22010 0.90956 0.99283 1.03834 1.18644 0.95894 0.94099 0.88391 1.21217 0.92185 1.49246 0.92281 0.92754 1.24952 0.96642 0.95162 0.97205 1.69831 1.28820 1.50367 1.04044 0.86629 0.85042 0.77929 0.78602 1.20796 1.21270 1.19977 1.21993 0.93484 1.00895 0.99709 1.21688 0.93138 0.89088 0.96950 1.24276 0.94080 0.97584 0.94557 1.77119 1.24134 0.97129 1.13493 0.90659 0.92014 0.90913 0.89434 0.88456 0.79987 0.90513 0.92031 0.94398 0.87814 0.95461 0.93016 0.92200 0.92985 0.92207 0.90316 0.78908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.09 37.16 0.37 -0.75 16 2 C 0.13 0.95 7.21 -4.04 -0.03 0.92 16 3 N -0.37 -4.36 3.65 -60.81 -0.22 -4.58 16 4 C 0.11 1.49 11.38 -16.56 -0.19 1.30 16 5 C -0.28 -4.37 5.47 -105.07 -0.57 -4.95 16 6 C 0.59 10.90 7.61 -12.52 -0.10 10.81 16 7 O -0.57 -11.82 16.45 5.27 0.09 -11.73 16 8 N -0.59 -11.02 2.97 -174.03 -0.52 -11.54 16 9 C 0.09 1.73 5.24 -3.71 -0.02 1.71 16 10 C -0.12 -2.74 5.16 -26.59 -0.14 -2.88 16 11 C 0.05 1.15 2.06 -91.71 -0.19 0.96 16 12 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.51 11.30 55.43 0.63 -23.88 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.12 -2.55 5.30 -26.62 -0.14 -2.69 16 21 C 0.11 2.11 6.44 -3.71 -0.02 2.09 16 22 C 0.08 1.19 9.57 -16.98 -0.16 1.02 16 23 N -0.30 -4.23 12.33 30.86 0.38 -3.85 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16 29 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.27 4.31 -51.93 -0.22 1.05 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.46 7.00 -51.92 -0.36 1.09 16 40 H 0.19 2.48 6.65 -52.49 -0.35 2.14 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -31.56 324.54 -7.21 -38.77 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.86 Total: 0.85 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.58 Total: -4.89 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.27 Total: -43.84 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.56 -7.21 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334333376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.257 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds