Wall clock time and date at job start Mon Mar 30 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47148 * 2 1 4 4 C 1.34263 * 125.75192 * 125.26040 * 3 2 1 5 5 C 1.38048 * 107.41557 * 180.14608 * 4 3 2 6 6 C 1.47420 * 126.41353 * 179.87708 * 5 4 3 7 7 O 1.21605 * 120.00444 * 328.08681 * 6 5 4 8 8 N 1.34780 * 120.00091 * 148.09507 * 6 5 4 9 9 C 1.46925 * 120.62990 * 353.92202 * 8 6 5 10 10 C 1.53194 * 108.89630 * 233.51939 * 9 8 6 11 11 C 1.53081 * 109.28738 * 305.57806 * 10 9 8 12 12 C 1.50701 * 109.43430 * 181.23714 * 11 10 9 13 13 H 1.08009 * 119.99770 * 239.79225 * 12 11 10 14 14 C 1.37874 * 120.00525 * 59.79416 * 12 11 10 15 15 N 1.31512 * 120.00038 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00370 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46841 * 89.99701 * 16 14 12 18 18 H 1.48498 * 109.47399 * 210.00260 * 16 14 12 19 19 H 1.48508 * 109.46953 * 330.00079 * 16 14 12 20 20 C 1.53033 * 109.66245 * 61.15324 * 11 10 9 21 21 C 1.46925 * 120.63429 * 173.90159 * 8 6 5 22 22 C 1.41296 * 107.16747 * 359.61480 * 5 4 3 23 23 N 1.30442 * 108.02475 * 0.24104 * 22 5 4 24 24 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46951 * 300.00022 * 1 2 3 26 26 H 1.08997 * 109.47401 * 59.99703 * 1 2 3 27 27 H 1.08997 * 109.47275 * 240.00235 * 2 1 3 28 28 H 1.09002 * 109.46741 * 120.00075 * 2 1 3 29 29 H 1.07995 * 126.29587 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.58711 * 353.37330 * 9 8 6 31 31 H 1.08999 * 109.59039 * 113.65493 * 9 8 6 32 32 H 1.08995 * 109.49577 * 65.38037 * 10 9 8 33 33 H 1.08991 * 109.49992 * 185.48574 * 10 9 8 34 34 H 1.08997 * 109.34700 * 301.12110 * 11 10 9 35 35 H 0.96996 * 120.00716 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.50175 * 178.74171 * 20 11 10 37 37 H 1.09006 * 109.52484 * 58.66310 * 20 11 10 38 38 H 1.09002 * 109.58793 * 246.20359 * 21 8 6 39 39 H 1.09008 * 109.58575 * 6.47752 * 21 8 6 40 40 H 1.08000 * 125.98328 * 180.20687 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8729 1.9112 0.8897 5 6 3.0708 3.2311 0.5370 6 6 3.9322 4.2034 1.2339 7 8 4.0845 4.1275 2.4380 8 7 4.5511 5.1767 0.5366 9 6 4.4852 5.2037 -0.9309 10 6 5.9096 5.2742 -1.4902 11 6 6.6385 6.4683 -0.8686 12 6 8.0303 6.5587 -1.4394 13 1 8.8874 6.4944 -0.7853 14 6 8.2096 6.7236 -2.7964 15 7 7.1660 6.8015 -3.5930 16 14 9.9349 6.8364 -3.5038 17 1 10.4149 5.4763 -3.8570 18 1 9.9161 7.6865 -4.7212 19 1 10.8451 7.4362 -2.4952 20 6 6.7204 6.2884 0.6489 21 6 5.3039 6.2312 1.2294 22 6 2.2977 3.4739 -0.6205 23 7 1.6771 2.3692 -0.9304 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3214 1.3995 1.7284 30 1 3.9955 4.2991 -1.2915 31 1 3.9215 6.0784 -1.2554 32 1 6.4431 4.3563 -1.2436 33 1 5.8699 5.3928 -2.5730 34 1 6.0923 7.3834 -1.0970 35 1 7.2921 6.9178 -4.5476 36 1 7.2592 7.1289 1.0864 37 1 7.2452 5.3609 0.8780 38 1 4.8092 7.1911 1.0812 39 1 5.3522 6.0058 2.2949 40 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334333376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:25 Heat of formation + Delta-G solvation = 19.528063 kcal Electronic energy + Delta-G solvation = -21654.066672 eV Core-core repulsion = 18469.587882 eV Total energy + Delta-G solvation = -3184.478790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45088 -40.60383 -38.26563 -35.60401 -35.16436 -33.09708 -31.82548 -31.54076 -30.35391 -28.00483 -25.37321 -24.92364 -23.79379 -23.06390 -21.61801 -21.24851 -19.95198 -18.58660 -18.16087 -17.30610 -16.76313 -16.54253 -16.46152 -15.93409 -15.42241 -15.05212 -14.76933 -14.70389 -14.54636 -14.14011 -13.96134 -13.68499 -13.43194 -13.19201 -12.96467 -12.93427 -12.77549 -12.45413 -12.41441 -12.11873 -11.94628 -11.82962 -11.43749 -10.97422 -10.95712 -10.73299 -10.49373 -10.34751 -9.74235 -9.38990 -8.05592 -6.18647 0.60873 1.16850 1.42175 1.44126 1.44559 1.53121 2.08148 2.41145 2.46138 3.20726 3.44265 3.81033 3.90567 4.05091 4.10932 4.18204 4.32668 4.37554 4.41419 4.45193 4.52484 4.62531 4.67068 4.79832 4.81798 4.90683 4.92363 5.01855 5.22460 5.23235 5.28464 5.41526 5.46937 5.62028 5.69313 5.93265 6.01840 6.15464 6.41888 6.52203 6.58994 6.90791 7.25550 7.48725 8.97653 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.004216 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.499397 B = 6639.353483 C = 7324.882619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.356 5.356 4 C 0.128 3.872 5 C -0.313 4.313 6 C 0.591 3.409 7 O -0.594 6.594 8 N -0.599 5.599 9 C 0.109 3.891 10 C -0.113 4.113 11 C 0.046 3.954 12 C -0.535 4.535 13 H 0.046 0.954 14 C 0.018 3.982 15 N -0.911 5.911 16 Si 0.948 3.052 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.113 4.113 21 C 0.118 3.882 22 C 0.078 3.922 23 N -0.316 5.316 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.210 0.790 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.006 0.994 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -12.641 5.907 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.135 5.135 4 C -0.024 4.024 5 C -0.328 4.328 6 C 0.382 3.618 7 O -0.477 6.477 8 N -0.329 5.329 9 C -0.013 4.013 10 C -0.152 4.152 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.065 0.935 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.151 4.151 21 C -0.004 4.004 22 C -0.108 4.108 23 N -0.136 5.136 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.226 0.774 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.306 -13.375 5.492 19.649 hybrid contribution 1.752 0.812 -0.142 1.936 sum -11.554 -12.562 5.350 17.886 Atomic orbital electron populations 1.22021 0.93087 1.04291 1.02362 1.22266 0.96716 0.75078 1.06310 1.48969 1.33486 1.11467 1.19622 1.23258 0.91397 0.93016 0.94749 1.20214 1.12108 0.96301 1.04199 1.17635 0.78534 0.79969 0.85662 1.90676 1.66415 1.74971 1.15629 1.48028 1.50387 1.26693 1.07821 1.22178 0.98506 1.02647 0.77966 1.21781 0.93338 0.97695 1.02347 1.18615 0.94527 0.93690 0.90446 1.21557 0.93352 1.49624 0.92747 0.93522 1.25628 1.00011 0.94942 0.97555 1.69943 1.30330 1.50609 1.04170 0.85713 0.81041 0.77919 0.77891 1.20464 1.20796 1.19693 1.21840 0.95111 1.00437 0.97696 1.21609 0.91860 0.89999 0.96930 1.24393 0.93966 0.98161 0.94324 1.77082 1.24520 0.97541 1.14455 0.87841 0.92802 0.92869 0.88346 0.85112 0.77379 0.88569 0.91005 0.96015 0.90262 0.97563 0.92960 0.91638 0.94203 0.90835 0.89959 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.09 71.98 0.73 -1.05 16 2 C 0.11 1.35 7.21 86.38 0.62 1.97 16 3 N -0.36 -7.63 3.65 -346.29 -1.26 -8.89 16 4 C 0.13 3.03 11.38 84.28 0.96 3.99 16 5 C -0.31 -9.40 5.47 -20.15 -0.11 -9.51 16 6 C 0.59 21.36 7.61 86.66 0.66 22.02 16 7 O -0.59 -24.33 16.45 -4.05 -0.07 -24.39 16 8 N -0.60 -21.85 2.97 -822.78 -2.45 -24.30 16 9 C 0.11 3.94 5.24 86.36 0.45 4.39 16 10 C -0.11 -5.14 5.16 30.69 0.16 -4.98 16 11 C 0.05 2.23 2.06 -11.50 -0.02 2.20 16 12 C -0.53 -29.13 8.56 25.60 0.22 -28.91 16 13 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 14 C 0.02 0.95 5.30 84.65 0.45 1.40 16 15 N -0.91 -50.64 11.30 21.45 0.24 -50.40 16 16 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 C -0.11 -4.71 5.30 30.67 0.16 -4.54 16 21 C 0.12 4.34 6.44 86.36 0.56 4.90 16 22 C 0.08 2.17 9.57 85.65 0.82 2.99 16 23 N -0.32 -8.45 12.33 -56.27 -0.69 -9.14 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.13 0.70 8.06 -2.39 -0.02 0.68 16 29 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.10 3.12 4.31 -2.38 -0.01 3.11 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 4.02 6.03 -2.39 -0.01 4.00 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.99 7.00 -2.38 -0.02 2.97 16 40 H 0.20 4.97 6.65 -2.91 -0.02 4.95 16 Total: -1.00 -68.13 324.54 4.48 -63.65 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.03 Total: 13.42 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.65 Total: -5.12 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -4.16 Total: -92.74 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.13 4.48 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334333376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.176 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds