Wall clock time and date at job start Mon Mar 30 2020 20:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47191 * 2 1 4 4 C 1.50701 * 109.47204 * 240.00263 * 2 1 3 5 5 H 1.08006 * 119.99615 * 240.00630 * 4 2 1 6 6 C 1.37879 * 120.00262 * 60.27028 * 4 2 1 7 7 N 1.31513 * 119.99485 * 359.73426 * 6 4 2 8 8 Si 1.86796 * 119.99918 * 179.72628 * 6 4 2 9 9 H 1.48495 * 109.47142 * 90.00684 * 8 6 4 10 10 H 1.48498 * 109.46869 * 210.00419 * 8 6 4 11 11 H 1.48496 * 109.47453 * 330.00416 * 8 6 4 12 12 N 1.46496 * 109.47144 * 119.99950 * 2 1 3 13 13 C 1.46502 * 119.99898 * 66.32963 * 12 2 1 14 14 C 1.34777 * 120.00010 * 246.32755 * 12 2 1 15 15 O 1.21288 * 119.99863 * 184.19258 * 14 12 2 16 16 C 1.50696 * 120.00266 * 4.19400 * 14 12 2 17 17 H 1.09002 * 109.43169 * 41.06926 * 16 14 12 18 18 C 1.53114 * 109.43174 * 160.92438 * 16 14 12 19 19 C 1.53496 * 109.30337 * 189.98656 * 18 16 14 20 20 C 1.50703 * 108.06296 * 311.30493 * 19 18 16 21 21 C 1.33866 * 128.68244 * 195.79196 * 20 19 18 22 22 N 1.34420 * 107.79930 * 179.84221 * 21 20 19 23 23 C 1.30790 * 109.32217 * 0.02562 * 22 21 20 24 24 N 1.34408 * 108.55260 * 0.06968 * 23 22 21 25 25 C 1.46469 * 128.44776 * 179.82443 * 24 23 22 26 26 H 1.09001 * 109.46989 * 59.99907 * 1 2 3 27 27 H 1.08988 * 109.47422 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46949 * 300.00520 * 1 2 3 29 29 H 0.97002 * 119.99340 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47584 * 91.78443 * 13 12 2 31 31 H 1.09005 * 109.47022 * 211.79106 * 13 12 2 32 32 H 1.09002 * 109.47117 * 331.77931 * 13 12 2 33 33 H 1.09000 * 109.50494 * 309.93775 * 18 16 14 34 34 H 1.09001 * 109.49913 * 70.04523 * 18 16 14 35 35 H 1.09001 * 109.74935 * 191.66075 * 19 18 16 36 36 H 1.08998 * 109.78174 * 70.96798 * 19 18 16 37 37 H 1.08002 * 126.09668 * 359.84102 * 21 20 19 38 38 H 1.07999 * 125.72262 * 180.02562 * 23 22 21 39 39 H 1.09010 * 109.59642 * 77.52892 * 25 24 23 40 40 H 1.09003 * 109.72912 * 317.14039 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.7039 -0.2360 -2.4828 7 7 0.9479 0.8333 -2.6034 8 14 2.3330 -1.1122 -4.0079 9 1 1.3569 -2.1531 -4.4188 10 1 2.5019 -0.1299 -5.1087 11 1 3.6402 -1.7499 -3.7087 12 7 2.0183 -0.6906 1.1961 13 6 1.7823 -2.1271 1.3603 14 6 2.6848 -0.0044 2.1456 15 8 3.1551 -0.5888 3.0986 16 6 2.8456 1.4890 2.0230 17 1 1.9129 1.9261 1.6665 18 6 3.1922 2.0781 3.3931 19 6 3.1100 3.6092 3.3226 20 6 3.8786 4.0630 2.1083 21 6 4.3177 5.2911 1.8068 22 7 4.9555 5.2209 0.6256 23 6 4.9232 3.9885 0.1889 24 7 4.2595 3.2354 1.0826 25 6 3.9670 1.8013 1.0265 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7172 1.1672 -3.4844 30 1 2.6259 -2.6831 0.9513 31 1 1.6737 -2.3587 2.4199 32 1 0.8713 -2.4083 0.8318 33 1 2.4857 1.7097 4.1369 34 1 4.2030 1.7806 3.6720 35 1 3.5501 4.0435 4.2203 36 1 2.0686 3.9192 3.2363 37 1 4.1834 6.1797 2.4057 38 1 5.3564 3.6355 -0.7353 39 1 4.8597 1.2353 1.2932 40 1 3.6491 1.5297 0.0199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335351457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:45 Heat of formation + Delta-G solvation = 21.067978 kcal Electronic energy + Delta-G solvation = -22561.277676 eV Core-core repulsion = 19376.865662 eV Total energy + Delta-G solvation = -3184.412014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10416 -39.60322 -36.09692 -35.70153 -32.85746 -32.75267 -30.65202 -29.33925 -27.86919 -26.33795 -25.47166 -24.34859 -22.35181 -21.44872 -21.15035 -19.11556 -18.27752 -16.94092 -16.79252 -16.46630 -15.43447 -15.19932 -14.88886 -14.49446 -13.99043 -13.84697 -13.71241 -13.49301 -13.26297 -12.95202 -12.81985 -12.26749 -11.82917 -11.75540 -11.60929 -11.45364 -11.19631 -11.06163 -10.98843 -10.80869 -10.77729 -10.44536 -10.32177 -9.74342 -9.50663 -9.27241 -9.15034 -8.69328 -8.10032 -7.83116 -6.32448 -4.42431 2.31425 2.86537 3.12757 3.20321 3.21819 3.24261 3.39810 3.73033 4.19594 4.65531 4.74386 4.80084 4.92172 4.98951 5.05015 5.31732 5.34121 5.47759 5.56943 5.64702 5.78568 5.82861 5.92648 6.04069 6.11522 6.13937 6.26879 6.32338 6.44694 6.58746 6.63564 6.76586 6.96519 7.00590 7.20291 7.45293 7.50698 7.68337 7.93520 8.25078 8.30711 8.57364 8.77662 9.27169 10.72092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.006961 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.889056 B = 4021.392364 C = 5195.862885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.249 3.751 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.588 5.588 13 C 0.099 3.901 14 C 0.515 3.485 15 O -0.566 6.566 16 C -0.114 4.114 17 H 0.104 0.896 18 C -0.103 4.103 19 C -0.045 4.045 20 C -0.026 4.026 21 C -0.031 4.031 22 N -0.503 5.503 23 C 0.189 3.811 24 N -0.446 5.446 25 C 0.111 3.889 26 H 0.095 0.905 27 H 0.034 0.966 28 H 0.012 0.988 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.204 0.796 39 H 0.086 0.914 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 2.673 7.253 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.149 3.851 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.317 5.317 13 C -0.044 4.044 14 C 0.301 3.699 15 O -0.447 6.447 16 C -0.136 4.136 17 H 0.122 0.878 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.141 4.141 21 C -0.179 4.179 22 N -0.221 5.221 23 C -0.093 4.093 24 N -0.128 5.128 25 C -0.011 4.011 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.183 0.817 38 H 0.220 0.780 39 H 0.104 0.896 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.406 2.971 7.119 8.080 hybrid contribution -0.218 -1.210 -0.820 1.478 sum 2.188 1.761 6.299 6.896 Atomic orbital electron populations 1.22149 0.97989 1.00080 1.00933 1.19186 0.91678 0.93307 0.80937 0.92903 1.21277 1.32620 1.13553 0.89843 0.91804 1.24890 0.94646 0.94855 0.99083 1.69850 1.35755 1.22295 1.24281 0.86483 0.79381 0.79429 0.82157 1.20434 1.20964 1.19787 1.48322 1.53357 1.09193 1.20862 1.21368 1.01241 0.81276 1.00552 1.20073 0.78843 0.88443 0.82555 1.90621 1.50043 1.70708 1.33325 1.21507 1.00422 0.94633 0.97041 0.87781 1.21480 1.03470 0.93749 0.95378 1.20239 0.99284 0.95405 0.93406 1.21169 1.07245 0.91651 0.94017 1.21738 1.03868 0.96170 0.96086 1.70471 1.21833 1.18274 1.11552 1.24783 1.00523 0.86642 0.97392 1.45410 1.41194 1.09131 1.17057 1.22042 0.98712 0.77599 1.02789 0.88628 0.94646 0.96870 0.92346 0.93407 0.92475 0.91027 0.90205 0.90820 0.89448 0.90015 0.81744 0.77981 0.89609 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.05 37.16 0.34 -2.90 16 2 C 0.25 5.32 2.03 -69.08 -0.14 5.18 16 3 H 0.05 1.17 4.27 -51.93 -0.22 0.94 16 4 C -0.53 -12.64 8.30 -34.44 -0.29 -12.92 16 5 H 0.06 1.54 7.35 -52.48 -0.39 1.15 16 6 C 0.07 1.67 5.31 -17.82 -0.09 1.57 16 7 N -0.88 -22.20 11.33 55.43 0.63 -21.57 16 8 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 12 N -0.59 -11.50 2.75 -175.26 -0.48 -11.98 16 13 C 0.10 1.77 9.34 59.85 0.56 2.33 16 14 C 0.51 9.69 6.81 -10.99 -0.07 9.61 16 15 O -0.57 -11.74 15.80 5.55 0.09 -11.65 16 16 C -0.11 -1.85 1.65 -91.59 -0.15 -2.00 16 17 H 0.10 1.75 7.01 -51.93 -0.36 1.39 16 18 C -0.10 -1.42 4.60 -26.42 -0.12 -1.55 16 19 C -0.05 -0.55 6.31 -27.62 -0.17 -0.72 16 20 C -0.03 -0.38 6.57 -81.73 -0.54 -0.92 16 21 C -0.03 -0.47 11.84 -17.95 -0.21 -0.69 16 22 N -0.50 -8.60 11.27 -14.87 -0.17 -8.77 16 23 C 0.19 3.00 12.66 -90.71 -1.15 1.86 16 24 N -0.45 -7.04 3.13 -114.11 -0.36 -7.40 16 25 C 0.11 1.77 5.99 -3.94 -0.02 1.75 16 26 H 0.10 2.24 6.08 -51.93 -0.32 1.92 16 27 H 0.03 0.72 6.94 -51.94 -0.36 0.36 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16 32 H 0.07 1.24 6.78 -51.93 -0.35 0.89 16 33 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.20 2.64 8.06 -52.49 -0.42 2.22 16 39 H 0.09 1.33 8.12 -51.92 -0.42 0.91 16 40 H 0.12 2.11 6.41 -51.93 -0.33 1.78 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -27.85 319.20 -8.22 -36.08 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.65 Total: 5.59 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.07 Total: 0.62 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.38 Total: -49.73 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.85 -8.22 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335351457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.147 kcal (2) G-P(sol) polarization free energy of solvation -27.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds