Wall clock time and date at job start Mon Mar 30 2020 20:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 C 1.34779 * 119.99892 * 239.99608 * 12 2 1 15 15 O 1.21285 * 119.99902 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00331 * 180.02562 * 14 12 2 17 17 H 1.09005 * 109.42832 * 300.00494 * 16 14 12 18 18 C 1.53022 * 109.43140 * 180.10346 * 16 14 12 19 19 C 1.53369 * 109.74602 * 168.19801 * 18 16 14 20 20 C 1.50949 * 108.20791 * 50.65086 * 19 18 16 21 21 N 1.30125 * 128.28509 * 163.34748 * 20 19 18 22 22 N 1.40321 * 108.12230 * 180.13061 * 21 20 19 23 23 H 0.96998 * 126.00615 * 179.97438 * 22 21 20 24 24 C 1.35198 * 107.98860 * 359.96291 * 22 21 20 25 25 C 1.34569 * 107.62260 * 359.95753 * 24 22 21 26 26 C 1.50863 * 128.34491 * 180.22677 * 25 24 22 27 27 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 28 28 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 32 32 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 33 33 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 34 34 H 1.08998 * 109.42332 * 288.28092 * 18 16 14 35 35 H 1.08998 * 109.42531 * 48.16852 * 18 16 14 36 36 H 1.09005 * 109.71336 * 170.32461 * 19 18 16 37 37 H 1.09005 * 109.71604 * 290.96867 * 19 18 16 38 38 H 1.07997 * 126.18865 * 179.97438 * 24 22 21 39 39 H 1.09002 * 109.67177 * 43.57142 * 26 25 24 40 40 H 1.09004 * 109.75156 * 282.92775 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2958 -0.7460 3.3137 17 1 2.4476 -1.0885 3.9066 18 6 4.1435 0.2174 4.1472 19 6 4.4130 -0.3918 5.5287 20 6 4.9410 -1.7921 5.3318 21 7 5.5648 -2.5465 6.1892 22 7 5.8664 -3.7643 5.5606 23 1 6.3299 -4.5148 5.9641 24 6 5.3972 -3.7078 4.2939 25 6 4.8207 -2.5035 4.1263 26 6 4.1458 -1.9521 2.8949 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7173 1.1669 -3.4844 31 1 2.4156 -2.7377 0.9720 32 1 1.6236 -2.2851 2.5004 33 1 0.6904 -2.3001 0.9848 34 1 5.0911 0.3984 3.6398 35 1 3.6099 1.1604 4.2656 36 1 5.1528 0.2092 6.0577 37 1 3.4869 -0.4252 6.1028 38 1 5.4715 -4.4882 3.5511 39 1 3.5068 -2.7168 2.4532 40 1 4.8985 -1.6382 2.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335931882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:58 Heat of formation + Delta-G solvation = 32.490973 kcal Electronic energy + Delta-G solvation = -22005.570525 eV Core-core repulsion = 18821.653849 eV Total energy + Delta-G solvation = -3183.916676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51345 -39.34009 -36.08952 -35.21138 -32.99839 -32.07366 -30.45358 -29.69501 -28.18192 -26.21643 -25.20366 -24.46208 -22.76032 -21.06347 -20.55480 -18.87183 -18.12062 -17.67748 -16.65301 -16.05234 -15.39069 -15.28368 -14.75718 -14.44014 -14.01279 -13.66103 -13.47770 -13.15274 -12.92999 -12.56031 -12.44854 -12.21597 -11.80043 -11.68668 -11.44288 -11.33880 -11.05008 -10.88590 -10.78671 -10.69093 -10.63663 -10.23490 -10.20908 -10.09992 -9.42415 -9.12379 -8.80208 -8.43398 -8.39702 -7.52574 -6.04899 -4.12548 1.83798 2.70800 2.78390 3.26798 3.34615 3.36937 3.45344 4.00779 4.40989 4.45562 4.72582 5.00015 5.03574 5.20080 5.25883 5.32911 5.47561 5.53848 5.59612 5.71873 5.77384 5.90129 5.95731 6.07479 6.09686 6.21562 6.33023 6.36749 6.49843 6.65293 6.80015 6.86035 7.09536 7.21202 7.48580 7.56933 7.62386 7.75115 8.05130 8.23371 8.59359 8.87270 9.12608 9.54207 11.00443 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.004545 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.129960 B = 6158.974540 C = 6711.089849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.508 3.492 15 O -0.552 6.552 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.096 4.096 19 C -0.039 4.039 20 C 0.085 3.915 21 N -0.295 5.295 22 N -0.489 5.489 23 H 0.437 0.563 24 C 0.058 3.942 25 C -0.226 4.226 26 C -0.041 4.041 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.086 0.914 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -9.661 13.837 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.294 3.706 15 O -0.431 6.431 16 C -0.124 4.124 17 H 0.109 0.891 18 C -0.134 4.134 19 C -0.078 4.078 20 C -0.083 4.083 21 N -0.117 5.117 22 N -0.198 5.198 23 H 0.280 0.720 24 C -0.087 4.087 25 C -0.238 4.238 26 C -0.079 4.079 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.193 0.807 39 H 0.104 0.896 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.802 -9.031 14.728 18.224 hybrid contribution 0.254 -1.164 -1.596 1.991 sum 6.056 -10.195 13.132 17.694 Atomic orbital electron populations 1.22093 0.98360 0.99298 1.00803 1.18935 0.90787 0.94568 0.80100 0.91892 1.21358 1.31648 1.12798 0.90290 0.92254 1.24892 0.95021 0.94977 0.98946 1.69888 1.36575 1.22625 1.23572 0.86462 0.78592 0.79565 0.82882 1.19855 1.21002 1.20967 1.48198 1.49003 1.11522 1.23569 1.21693 1.01339 0.83480 0.99373 1.20346 0.78946 0.86988 0.84280 1.90639 1.58443 1.17222 1.76831 1.21308 0.99060 0.96270 0.95780 0.89074 1.21369 1.00770 0.98209 0.93057 1.20202 1.00845 0.88248 0.98511 1.22460 0.97058 0.97080 0.91745 1.76974 1.21055 0.92584 1.21106 1.46291 1.48885 1.14849 1.09755 0.71986 1.22051 0.98967 0.99356 0.88361 1.20141 1.10526 0.95161 0.97931 1.20202 0.98011 0.96225 0.93504 0.88894 0.95145 0.96988 0.92796 0.93126 0.92682 0.91123 0.91024 0.89836 0.89842 0.89813 0.80692 0.89593 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 2 C 0.26 6.48 2.63 -69.08 -0.18 6.30 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.52 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 7 N -0.89 -25.05 11.33 55.43 0.63 -24.42 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 N -0.59 -12.29 2.75 -175.26 -0.48 -12.77 16 13 C 0.09 1.37 8.02 59.85 0.48 1.85 16 14 C 0.51 10.22 7.06 -10.98 -0.08 10.14 16 15 O -0.55 -13.37 15.10 5.55 0.08 -13.29 16 16 C -0.10 -1.52 1.67 -91.56 -0.15 -1.67 16 17 H 0.09 1.22 7.36 -51.93 -0.38 0.83 16 18 C -0.10 -1.32 4.64 -26.53 -0.12 -1.44 16 19 C -0.04 -0.45 6.31 -27.57 -0.17 -0.63 16 20 C 0.09 1.11 7.10 -82.35 -0.58 0.53 16 21 N -0.29 -3.87 12.68 33.75 0.43 -3.44 16 22 N -0.49 -4.88 7.37 30.35 0.22 -4.66 16 23 H 0.44 2.79 8.96 -182.43 -1.64 1.16 16 24 C 0.06 0.58 11.95 -17.37 -0.21 0.37 16 25 C -0.23 -2.81 5.89 -104.99 -0.62 -3.43 16 26 C -0.04 -0.55 5.06 -27.60 -0.14 -0.69 16 27 H 0.09 2.43 6.08 -51.93 -0.32 2.11 16 28 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.05 0.78 7.17 -51.93 -0.37 0.41 16 32 H 0.05 0.71 5.90 -51.93 -0.31 0.41 16 33 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 34 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.09 1.05 4.89 -51.93 -0.25 0.80 16 40 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -32.82 315.74 -7.98 -40.80 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.77 Total: 1.57 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.83 Total: -4.43 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.80 Total: -45.28 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.82 -7.98 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335931882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.291 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds