Wall clock time and date at job start Mon Mar 30 2020 20:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46784 * 2 1 4 4 C 1.50700 * 109.47265 * 119.99896 * 2 1 3 5 5 H 1.07996 * 120.00176 * 119.99937 * 4 2 1 6 6 C 1.37872 * 119.99855 * 300.00179 * 4 2 1 7 7 N 1.31510 * 120.00256 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47317 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46959 * 119.99959 * 8 6 4 11 11 H 1.48497 * 109.47572 * 240.00321 * 8 6 4 12 12 N 1.46498 * 109.47398 * 240.00226 * 2 1 3 13 13 C 1.46500 * 119.99739 * 294.21732 * 12 2 1 14 14 C 1.34782 * 120.00367 * 114.21431 * 12 2 1 15 15 O 1.21277 * 119.99928 * 182.98590 * 14 12 2 16 16 C 1.50702 * 119.99591 * 2.98137 * 14 12 2 17 17 H 1.08993 * 109.43128 * 313.10743 * 16 14 12 18 18 C 1.53025 * 109.42500 * 193.21060 * 16 14 12 19 19 C 1.53376 * 109.74933 * 168.26578 * 18 16 14 20 20 C 1.50954 * 108.19957 * 50.66982 * 19 18 16 21 21 N 1.30123 * 128.27940 * 163.23159 * 20 19 18 22 22 N 1.40322 * 108.11876 * 180.15001 * 21 20 19 23 23 H 0.97000 * 126.00196 * 179.97438 * 22 21 20 24 24 C 1.35191 * 107.99244 * 359.78038 * 22 21 20 25 25 C 1.34573 * 107.62132 * 0.27161 * 24 22 21 26 26 C 1.50877 * 128.33411 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47735 * 300.00154 * 1 2 3 29 29 H 1.09001 * 109.47112 * 60.00093 * 1 2 3 30 30 H 0.97005 * 120.00361 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47009 * 266.44418 * 13 12 2 32 32 H 1.09000 * 109.47468 * 26.44492 * 13 12 2 33 33 H 1.09001 * 109.46954 * 146.44576 * 13 12 2 34 34 H 1.08997 * 109.42538 * 48.17705 * 18 16 14 35 35 H 1.09004 * 109.42586 * 288.35052 * 18 16 14 36 36 H 1.09007 * 109.71378 * 290.99700 * 19 18 16 37 37 H 1.08996 * 109.75395 * 170.36929 * 19 18 16 38 38 H 1.07994 * 126.19295 * 179.97438 * 24 22 21 39 39 H 1.09006 * 109.72111 * 282.78885 * 26 25 24 40 40 H 1.09006 * 109.71370 * 43.43226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6905 -1.1962 13 6 1.7719 -2.1246 -1.3660 14 6 2.6944 -0.0065 -2.1405 15 8 3.0515 -0.5660 -3.1555 16 6 3.0064 1.4534 -1.9349 17 1 2.1105 1.9709 -1.5919 18 6 3.4727 2.0653 -3.2577 19 6 3.5113 3.5938 -3.1366 20 6 4.2897 3.9487 -1.8928 21 7 4.8144 5.0948 -1.5698 22 7 5.4449 4.9506 -0.3246 23 1 5.9190 5.6455 0.1584 24 6 5.2718 3.6742 0.0859 25 6 4.5656 3.0332 -0.8635 26 6 4.1123 1.5942 -0.8813 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7080 1.1608 3.4844 31 1 2.6234 -2.6874 -0.9834 32 1 0.8737 -2.4065 -0.8165 33 1 1.6352 -2.3470 -2.4243 34 1 2.7818 1.7819 -4.0517 35 1 4.4697 1.6953 -3.4968 36 1 2.4958 3.9823 -3.0583 37 1 4.0017 4.0204 -4.0115 38 1 5.6385 3.2451 1.0066 39 1 4.9510 0.9476 -1.1394 40 1 3.7233 1.3191 0.0991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335931884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:05 Heat of formation + Delta-G solvation = 27.673978 kcal Electronic energy + Delta-G solvation = -22466.290699 eV Core-core repulsion = 19282.165143 eV Total energy + Delta-G solvation = -3184.125557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24099 -39.30755 -35.88884 -35.44582 -32.63964 -31.98523 -30.22890 -29.18443 -28.78295 -26.08027 -25.32785 -24.21973 -22.07322 -21.12890 -20.75594 -18.75397 -17.93843 -17.37872 -16.53690 -16.28265 -15.14326 -15.05577 -14.55368 -14.48136 -14.00665 -13.48928 -13.19199 -13.01145 -12.73065 -12.70007 -12.39021 -11.97288 -11.64413 -11.57893 -11.41180 -11.26373 -11.08892 -10.90151 -10.81077 -10.59024 -10.49963 -10.30247 -10.18017 -9.94906 -9.30619 -9.16304 -8.86241 -8.55415 -8.12296 -7.59059 -6.19092 -4.27066 2.11674 2.99052 3.04658 3.18145 3.27744 3.31074 3.42819 4.01590 4.30652 4.70728 4.99839 5.12148 5.20973 5.23050 5.49172 5.57417 5.71038 5.81576 5.85780 5.92922 6.09173 6.19676 6.23548 6.29047 6.35936 6.46695 6.49638 6.58131 6.66893 6.69955 6.77411 6.91188 7.00939 7.20806 7.43927 7.48237 7.67106 7.85358 7.88428 8.11677 8.49896 8.76461 9.05757 9.41360 10.85449 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.007095 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.990028 B = 3945.483126 C = 5198.629098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.249 3.751 3 H 0.061 0.939 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.099 3.901 14 C 0.513 3.487 15 O -0.576 6.576 16 C -0.098 4.098 17 H 0.095 0.905 18 C -0.094 4.094 19 C -0.038 4.038 20 C 0.083 3.917 21 N -0.298 5.298 22 N -0.490 5.490 23 H 0.436 0.564 24 C 0.061 3.939 25 C -0.219 4.219 26 C -0.035 4.035 27 H 0.032 0.968 28 H 0.094 0.906 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.068 0.932 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 4.860 -4.352 8.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.321 5.321 13 C -0.045 4.045 14 C 0.301 3.699 15 O -0.458 6.458 16 C -0.120 4.120 17 H 0.113 0.887 18 C -0.132 4.132 19 C -0.077 4.077 20 C -0.085 4.085 21 N -0.120 5.120 22 N -0.199 5.199 23 H 0.279 0.721 24 C -0.084 4.084 25 C -0.231 4.231 26 C -0.074 4.074 27 H 0.051 0.949 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.080 5.858 -5.038 9.247 hybrid contribution 0.371 -0.899 1.831 2.073 sum 5.451 4.959 -3.208 8.037 Atomic orbital electron populations 1.22149 0.98340 0.99827 1.00815 1.19184 0.91277 0.93825 0.80914 0.92095 1.21351 1.31816 1.13243 0.90000 0.91922 1.24865 0.94824 0.94922 0.98917 1.69871 1.36161 1.22629 1.23775 0.86490 0.78700 0.79755 0.82806 1.19721 1.20972 1.20950 1.48266 1.53247 1.09065 1.21504 1.21323 1.00872 0.81883 1.00405 1.20478 0.77842 0.88844 0.82746 1.90578 1.55012 1.71260 1.28900 1.21237 1.00433 0.93410 0.96883 0.88678 1.21365 1.02803 0.92499 0.96560 1.20165 0.98772 0.96511 0.92242 1.22384 0.98067 0.90667 0.97424 1.76910 1.15642 1.22219 0.97266 1.46240 1.46524 1.10096 1.17012 0.72130 1.22058 1.00725 0.85504 1.00148 1.20113 1.08449 0.98321 0.96189 1.20050 0.96626 0.90441 1.00264 0.94922 0.88752 0.96906 0.92689 0.93784 0.91263 0.92640 0.90594 0.91104 0.89819 0.90040 0.80685 0.91361 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.04 37.16 0.34 -3.04 16 2 C 0.25 5.57 1.87 -69.09 -0.13 5.44 16 3 H 0.06 1.42 4.37 -51.92 -0.23 1.19 16 4 C -0.53 -12.83 8.26 -34.44 -0.28 -13.12 16 5 H 0.06 1.56 7.42 -52.49 -0.39 1.18 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.69 11.32 55.43 0.63 -22.06 16 8 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.34 2.75 -175.26 -0.48 -12.82 16 13 C 0.10 1.89 9.37 59.85 0.56 2.45 16 14 C 0.51 10.42 6.87 -10.98 -0.08 10.34 16 15 O -0.58 -12.76 15.60 5.56 0.09 -12.67 16 16 C -0.10 -1.73 1.61 -91.55 -0.15 -1.87 16 17 H 0.10 1.72 6.98 -51.93 -0.36 1.35 16 18 C -0.09 -1.43 4.55 -26.52 -0.12 -1.55 16 19 C -0.04 -0.52 6.31 -27.56 -0.17 -0.69 16 20 C 0.08 1.32 7.10 -82.34 -0.58 0.73 16 21 N -0.30 -4.69 12.68 33.75 0.43 -4.26 16 22 N -0.49 -6.40 7.37 30.35 0.22 -6.17 16 23 H 0.44 4.04 8.96 -182.43 -1.64 2.41 16 24 C 0.06 0.84 11.95 -17.37 -0.21 0.63 16 25 C -0.22 -3.54 5.89 -104.99 -0.62 -4.15 16 26 C -0.04 -0.61 5.23 -27.59 -0.14 -0.76 16 27 H 0.03 0.70 6.92 -51.93 -0.36 0.34 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.07 1.28 6.76 -51.93 -0.35 0.93 16 33 H 0.05 1.02 7.49 -51.93 -0.39 0.63 16 34 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 40 H 0.10 1.97 6.31 -51.93 -0.33 1.65 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -29.06 318.26 -7.88 -36.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.86 Total: 5.64 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.68 Total: -4.00 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.80 Total: -45.31 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.06 -7.88 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335931884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.616 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds