Wall clock time and date at job start Mon Mar 30 2020 20:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46784 * 2 1 4 4 C 1.50700 * 109.47265 * 119.99896 * 2 1 3 5 5 H 1.07996 * 120.00176 * 119.99937 * 4 2 1 6 6 C 1.37872 * 119.99855 * 300.00179 * 4 2 1 7 7 N 1.31510 * 120.00256 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47317 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46959 * 119.99959 * 8 6 4 11 11 H 1.48497 * 109.47572 * 240.00321 * 8 6 4 12 12 N 1.46498 * 109.47398 * 240.00226 * 2 1 3 13 13 C 1.46500 * 119.99739 * 294.21732 * 12 2 1 14 14 C 1.34782 * 120.00367 * 114.21431 * 12 2 1 15 15 O 1.21277 * 119.99928 * 182.98590 * 14 12 2 16 16 C 1.50702 * 119.99591 * 2.98137 * 14 12 2 17 17 H 1.08993 * 109.43128 * 313.10743 * 16 14 12 18 18 C 1.53025 * 109.42500 * 193.21060 * 16 14 12 19 19 C 1.53376 * 109.74933 * 168.26578 * 18 16 14 20 20 C 1.50954 * 108.19957 * 50.66982 * 19 18 16 21 21 N 1.30123 * 128.27940 * 163.23159 * 20 19 18 22 22 N 1.40322 * 108.11876 * 180.15001 * 21 20 19 23 23 H 0.97000 * 126.00196 * 179.97438 * 22 21 20 24 24 C 1.35191 * 107.99244 * 359.78038 * 22 21 20 25 25 C 1.34573 * 107.62132 * 0.27161 * 24 22 21 26 26 C 1.50877 * 128.33411 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47735 * 300.00154 * 1 2 3 29 29 H 1.09001 * 109.47112 * 60.00093 * 1 2 3 30 30 H 0.97005 * 120.00361 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47009 * 266.44418 * 13 12 2 32 32 H 1.09000 * 109.47468 * 26.44492 * 13 12 2 33 33 H 1.09001 * 109.46954 * 146.44576 * 13 12 2 34 34 H 1.08997 * 109.42538 * 48.17705 * 18 16 14 35 35 H 1.09004 * 109.42586 * 288.35052 * 18 16 14 36 36 H 1.09007 * 109.71378 * 290.99700 * 19 18 16 37 37 H 1.08996 * 109.75395 * 170.36929 * 19 18 16 38 38 H 1.07994 * 126.19295 * 179.97438 * 24 22 21 39 39 H 1.09006 * 109.72111 * 282.78885 * 26 25 24 40 40 H 1.09006 * 109.71370 * 43.43226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6905 -1.1962 13 6 1.7719 -2.1246 -1.3660 14 6 2.6944 -0.0065 -2.1405 15 8 3.0515 -0.5660 -3.1555 16 6 3.0064 1.4534 -1.9349 17 1 2.1105 1.9709 -1.5919 18 6 3.4727 2.0653 -3.2577 19 6 3.5113 3.5938 -3.1366 20 6 4.2897 3.9487 -1.8928 21 7 4.8144 5.0948 -1.5698 22 7 5.4449 4.9506 -0.3246 23 1 5.9190 5.6455 0.1584 24 6 5.2718 3.6742 0.0859 25 6 4.5656 3.0332 -0.8635 26 6 4.1123 1.5942 -0.8813 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7080 1.1608 3.4844 31 1 2.6234 -2.6874 -0.9834 32 1 0.8737 -2.4065 -0.8165 33 1 1.6352 -2.3470 -2.4243 34 1 2.7818 1.7819 -4.0517 35 1 4.4697 1.6953 -3.4968 36 1 2.4958 3.9823 -3.0583 37 1 4.0017 4.0204 -4.0115 38 1 5.6385 3.2451 1.0066 39 1 4.9510 0.9476 -1.1394 40 1 3.7233 1.3191 0.0991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335931884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:04 Heat of formation + Delta-G solvation = 10.836010 kcal Electronic energy + Delta-G solvation = -22467.020849 eV Core-core repulsion = 19282.165143 eV Total energy + Delta-G solvation = -3184.855706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41311 -40.88482 -37.39652 -36.99896 -34.48681 -33.19471 -31.42803 -30.95559 -30.07659 -27.58700 -27.21550 -25.48924 -23.56615 -22.71938 -21.91825 -20.02826 -19.49152 -18.52012 -18.30569 -17.91565 -16.85780 -16.40314 -16.15035 -15.90334 -15.40296 -14.78842 -14.71884 -14.45291 -14.36551 -14.02319 -13.65277 -13.42983 -13.38536 -13.05035 -12.83176 -12.79887 -12.68712 -12.62922 -12.43798 -12.14833 -12.04481 -11.86422 -11.77998 -11.23757 -11.10874 -10.55440 -10.41459 -10.28262 -9.31572 -9.30117 -8.08864 -6.21917 0.99288 1.43790 1.49271 1.57535 1.76265 1.83254 2.04379 2.38103 2.53527 3.20437 3.50085 3.73715 3.92907 3.97519 4.23985 4.33960 4.44127 4.56175 4.60413 4.69887 4.72703 4.77356 4.79974 4.88685 4.98702 5.00252 5.04288 5.09434 5.14386 5.26809 5.31207 5.37741 5.46406 5.63209 5.73142 5.83826 6.00905 6.26824 6.50845 6.74266 6.76725 6.91227 7.37496 7.51884 8.94534 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.007095 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.990028 B = 3945.483126 C = 5198.629098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.256 3.744 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.053 0.947 6 C 0.032 3.968 7 N -0.907 5.907 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.597 5.597 13 C 0.098 3.902 14 C 0.510 3.490 15 O -0.595 6.595 16 C -0.094 4.094 17 H 0.089 0.911 18 C -0.085 4.085 19 C -0.033 4.033 20 C 0.073 3.927 21 N -0.317 5.317 22 N -0.476 5.476 23 H 0.452 0.548 24 C 0.073 3.927 25 C -0.252 4.252 26 C -0.022 4.022 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.203 0.797 39 H 0.062 0.938 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 5.437 -4.193 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.071 0.929 4 C -0.571 4.571 5 H 0.071 0.929 6 C -0.169 4.169 7 N -0.545 5.545 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.326 5.326 13 C -0.045 4.045 14 C 0.299 3.701 15 O -0.478 6.478 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.095 4.095 21 N -0.140 5.140 22 N -0.186 5.186 23 H 0.299 0.701 24 C -0.073 4.073 25 C -0.264 4.264 26 C -0.060 4.060 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.219 0.781 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.686 6.454 -4.881 9.890 hybrid contribution 0.211 -1.085 1.800 2.112 sum 5.897 5.370 -3.081 8.550 Atomic orbital electron populations 1.22014 0.98072 0.99775 1.00431 1.18982 0.91323 0.93354 0.80875 0.92900 1.21483 1.31654 1.12985 0.90991 0.92854 1.25419 0.95021 0.95468 1.01013 1.69961 1.36866 1.23492 1.24227 0.85659 0.78069 0.78749 0.80032 1.19806 1.20617 1.20993 1.48311 1.53382 1.09738 1.21207 1.21383 1.01068 0.81109 1.00951 1.20945 0.77119 0.89872 0.82173 1.90560 1.55683 1.71983 1.29541 1.21231 1.00360 0.91513 0.98371 0.89268 1.21289 1.02324 0.93581 0.95116 1.20191 0.99398 0.95151 0.92425 1.22655 0.98234 0.90585 0.97984 1.76860 1.16395 1.22318 0.98466 1.46273 1.45679 1.10372 1.16309 0.70117 1.22457 0.99100 0.85477 1.00305 1.20137 1.10645 0.97858 0.97729 1.19790 0.96079 0.91566 0.98592 0.94756 0.90715 0.95595 0.92672 0.93810 0.90809 0.91903 0.90251 0.91693 0.88835 0.87991 0.78052 0.91938 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.34 9.04 71.98 0.65 -5.69 16 2 C 0.26 11.47 1.87 44.24 0.08 11.55 16 3 H 0.05 2.48 4.37 -2.38 -0.01 2.47 16 4 C -0.53 -25.96 8.26 25.60 0.21 -25.75 16 5 H 0.05 2.66 7.42 -2.91 -0.02 2.64 16 6 C 0.03 1.55 5.30 84.65 0.45 2.00 16 7 N -0.91 -46.24 11.32 21.44 0.24 -45.99 16 8 Si 0.95 39.84 29.54 68.60 2.03 41.86 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.60 -24.81 2.75 -826.78 -2.28 -27.09 16 13 C 0.10 3.71 9.37 127.77 1.20 4.90 16 14 C 0.51 20.60 6.87 87.66 0.60 21.20 16 15 O -0.59 -26.10 15.60 -3.02 -0.05 -26.15 16 16 C -0.09 -3.26 1.61 -11.40 -0.02 -3.28 16 17 H 0.09 3.22 6.98 -2.39 -0.02 3.20 16 18 C -0.08 -2.49 4.55 30.73 0.14 -2.35 16 19 C -0.03 -0.84 6.31 30.05 0.19 -0.65 16 20 C 0.07 2.22 7.10 43.44 0.31 2.53 16 21 N -0.32 -9.42 12.68 -47.13 -0.60 -10.01 16 22 N -0.48 -11.41 7.37 -57.89 -0.43 -11.83 16 23 H 0.45 7.28 8.96 -213.18 -1.91 5.37 16 24 C 0.07 1.89 11.95 83.34 1.00 2.89 16 25 C -0.25 -7.89 5.89 -20.10 -0.12 -8.00 16 26 C -0.02 -0.75 5.23 30.04 0.16 -0.59 16 27 H 0.03 1.45 6.92 -2.39 -0.02 1.43 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.26 12.92 8.31 -92.70 -0.77 12.15 16 31 H 0.04 1.64 8.12 -2.38 -0.02 1.62 16 32 H 0.07 2.69 6.76 -2.39 -0.02 2.67 16 33 H 0.06 2.27 7.49 -2.39 -0.02 2.25 16 34 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 35 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 36 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.20 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.06 2.17 8.12 -2.38 -0.02 2.15 16 40 H 0.07 2.97 6.31 -2.38 -0.02 2.96 16 Total: -1.00 -60.06 318.26 2.92 -57.14 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.85 Total: 23.31 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.85 Total: -1.24 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.06 Total: -94.93 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -60.06 2.92 -57.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335931884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.975 kcal (2) G-P(sol) polarization free energy of solvation -60.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds