Wall clock time and date at job start Mon Mar 30 2020 20:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00015 * 2 1 4 4 C 1.50706 * 109.46972 * 269.99750 * 3 2 1 5 5 C 1.38643 * 120.79069 * 269.72170 * 4 3 2 6 6 C 1.38209 * 119.15968 * 179.79919 * 5 4 3 7 7 N 1.31868 * 120.76245 * 0.49013 * 6 5 4 8 8 C 1.31868 * 121.73160 * 359.73658 * 7 6 5 9 9 C 1.38210 * 120.76032 * 0.02708 * 8 7 6 10 10 C 1.34781 * 119.99740 * 180.02562 * 2 1 3 11 11 O 1.21275 * 119.99676 * 180.02562 * 10 2 1 12 12 C 1.50703 * 119.99971 * 359.97438 * 10 2 1 13 13 H 1.09002 * 109.47083 * 320.00492 * 12 10 2 14 14 N 1.46898 * 109.47113 * 200.00293 * 12 10 2 15 15 C 1.53000 * 109.46801 * 80.00207 * 12 10 2 16 16 C 1.52997 * 109.47060 * 184.99876 * 15 12 10 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.09001 * 109.46692 * 270.00187 * 1 2 3 26 26 H 1.09007 * 109.46709 * 29.99949 * 1 2 3 27 27 H 1.08998 * 109.47293 * 150.00019 * 1 2 3 28 28 H 1.08994 * 109.47518 * 29.99992 * 3 2 1 29 29 H 1.09001 * 109.46944 * 150.00405 * 3 2 1 30 30 H 1.07997 * 120.42198 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.61960 * 180.25206 * 6 5 4 32 32 H 1.07990 * 119.62505 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.41986 * 179.97438 * 9 8 7 34 34 H 1.00899 * 111.00057 * 300.00501 * 14 12 10 35 35 H 1.00902 * 110.99515 * 63.95638 * 14 12 10 36 36 H 1.09002 * 109.47398 * 305.00045 * 15 12 10 37 37 H 1.09001 * 109.47194 * 65.00225 * 15 12 10 38 38 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 39 39 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 40 40 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 6 3.6012 1.3178 -2.0880 6 6 3.7954 1.7326 -3.3920 7 7 2.9049 2.4939 -3.9973 8 6 1.7999 2.8838 -3.3923 9 6 1.5355 2.5042 -2.0900 10 6 2.1389 -1.1673 -0.0005 11 8 3.3516 -1.1673 -0.0001 12 6 1.3853 -2.4724 -0.0005 13 1 0.5221 -2.3935 0.6603 14 7 2.2677 -3.5473 0.4727 15 6 0.9129 -2.7884 -1.4210 16 6 0.0430 -4.0468 -1.4010 17 6 -0.4219 -4.3586 -2.8002 18 1 -0.1260 -3.7229 -3.6217 19 6 -1.2240 -5.4558 -3.0319 20 7 -1.5838 -6.2301 -2.0315 21 14 -1.8008 -5.8418 -4.7661 22 1 -0.8151 -6.7334 -5.4286 23 1 -3.1211 -6.5190 -4.7095 24 1 -1.9243 -4.5799 -5.5390 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 4.3362 0.6978 -1.5963 31 1 4.6885 1.4329 -3.9201 32 1 1.0935 3.5068 -3.9205 33 1 0.6290 2.8270 -1.5996 34 1 3.0761 -3.6404 -0.1239 35 1 2.5416 -3.3943 1.4317 36 1 0.3311 -1.9506 -1.8054 37 1 1.7779 -2.9549 -2.0630 38 1 0.6248 -4.8847 -1.0167 39 1 -0.8220 -3.8805 -0.7591 40 1 -2.1478 -7.0023 -2.1945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709426223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:25 Heat of formation + Delta-G solvation = -6.735937 kcal Electronic energy + Delta-G solvation = -21494.894513 eV Core-core repulsion = 18309.276830 eV Total energy + Delta-G solvation = -3185.617683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57863 -39.68753 -36.03780 -35.34093 -33.05055 -32.73707 -31.31134 -30.15153 -28.20998 -26.83492 -25.70497 -23.56682 -23.47667 -22.03383 -20.37431 -19.09631 -17.30855 -17.00551 -16.50469 -16.27077 -15.93676 -15.73975 -15.36417 -15.09931 -14.41296 -14.08825 -13.80959 -13.72863 -13.41880 -13.12738 -12.82276 -12.58996 -12.38374 -12.11645 -12.00959 -11.58661 -11.49243 -10.90117 -10.70480 -10.55825 -10.21304 -9.83606 -9.80683 -9.67125 -9.39372 -9.25073 -9.02875 -8.77733 -8.37625 -8.22610 -5.95833 -3.98080 1.01852 1.06357 2.66483 3.02244 3.33902 3.40247 3.43348 3.76855 4.35169 4.43669 4.47760 4.49404 4.75378 4.92630 4.96039 5.02237 5.09188 5.17839 5.32804 5.39747 5.43439 5.50070 5.54874 5.68304 5.71651 5.78605 5.84870 6.18323 6.30198 6.43533 6.58829 6.62008 7.03638 7.23363 7.45438 7.73016 7.76043 7.85845 7.92871 8.10194 8.18142 8.46041 9.09724 9.65398 11.15003 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.004722 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.552593 B = 5928.627637 C = 6903.999525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.612 5.612 3 C 0.151 3.849 4 C -0.061 4.061 5 C -0.148 4.148 6 C 0.096 3.904 7 N -0.485 5.485 8 C 0.094 3.906 9 C -0.162 4.162 10 C 0.486 3.514 11 O -0.550 6.550 12 C 0.079 3.921 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.523 4.523 18 H 0.051 0.949 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.013 0.987 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 18.066 5.373 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.345 5.345 3 C 0.028 3.972 4 C -0.070 4.070 5 C -0.168 4.168 6 C -0.061 4.061 7 N -0.195 5.195 8 C -0.063 4.063 9 C -0.182 4.182 10 C 0.274 3.726 11 O -0.427 6.427 12 C -0.037 4.037 13 H 0.116 0.884 14 N -0.334 5.334 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.561 4.561 18 H 0.069 0.931 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.841 17.646 4.441 19.111 hybrid contribution 0.061 0.322 -0.021 0.329 sum 5.901 17.969 4.419 19.423 Atomic orbital electron populations 1.22053 0.78738 1.04564 1.02186 1.48018 1.07327 1.05147 1.74046 1.20331 0.98961 0.86071 0.91845 1.20690 0.93966 0.95092 0.97297 1.22209 0.98420 1.00010 0.96181 1.22785 0.97770 0.93396 0.92099 1.67657 1.02778 1.11086 1.37941 1.22732 0.94228 0.97250 0.92062 1.22042 1.00036 0.99625 0.96496 1.22849 0.88844 0.86947 0.74009 1.90611 1.14318 1.87556 1.50264 1.21866 0.95782 0.84494 1.01543 0.88372 1.58999 1.24017 1.43670 1.06743 1.21697 1.00217 1.01432 0.90058 1.19010 0.93654 0.91356 0.96462 1.21263 1.30458 1.10545 0.93864 0.93062 1.24975 0.96311 0.96252 0.96656 1.69974 1.36559 1.16090 1.30519 0.86665 0.78098 0.78454 0.85194 1.20683 1.21239 1.20010 0.92248 0.91180 0.89044 0.89441 0.88851 0.84327 0.82780 0.82826 0.84959 0.83844 0.85449 0.92770 0.92908 0.94643 0.96876 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.85 59.85 0.59 1.28 16 2 N -0.61 -7.51 2.86 -182.95 -0.52 -8.04 16 3 C 0.15 1.58 5.58 -5.19 -0.03 1.55 16 4 C -0.06 -0.70 5.50 -104.32 -0.57 -1.27 16 5 C -0.15 -1.85 9.82 -39.44 -0.39 -2.24 16 6 C 0.10 1.19 11.18 -17.55 -0.20 1.00 16 7 N -0.49 -6.43 10.36 -13.25 -0.14 -6.56 16 8 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 9 C -0.16 -1.65 9.82 -39.44 -0.39 -2.03 16 10 C 0.49 7.42 6.91 -10.98 -0.08 7.35 16 11 O -0.55 -9.48 15.51 5.56 0.09 -9.39 16 12 C 0.08 1.30 2.31 -68.86 -0.16 1.14 16 13 H 0.10 1.53 7.21 -51.93 -0.37 1.16 16 14 N -0.81 -13.39 8.44 -5.65 -0.05 -13.44 16 15 C -0.10 -1.92 4.45 -26.73 -0.12 -2.04 16 16 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 17 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 27 H 0.09 1.13 4.83 -51.93 -0.25 0.88 16 28 H 0.09 0.66 8.03 -51.93 -0.42 0.25 16 29 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 30 H 0.14 1.77 7.74 -52.49 -0.41 1.37 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 35 H 0.33 4.77 9.06 -39.29 -0.36 4.42 16 36 H 0.05 1.04 6.43 -51.93 -0.33 0.70 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -33.27 337.09 -7.66 -40.94 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.76 Total: 7.84 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.08 Total: -7.17 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.03 Total: -54.02 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.27 -7.66 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709426223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.202 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds