Wall clock time and date at job start Mon Mar 30 2020 20:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47679 * 2 1 4 4 C 1.53005 * 109.47282 * 239.99519 * 2 1 3 5 5 C 1.52998 * 109.46574 * 60.00342 * 4 2 1 6 6 C 1.50699 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.38229 * 120.00347 * 269.72527 * 6 5 4 8 8 C 1.38237 * 120.00270 * 179.76375 * 7 6 5 9 9 C 1.38235 * 119.99537 * 0.51019 * 8 7 6 10 10 C 1.38232 * 120.00538 * 359.74274 * 9 8 7 11 11 C 1.38236 * 119.99629 * 0.02562 * 10 9 8 12 12 N 1.46902 * 109.47038 * 120.00089 * 2 1 3 13 13 C 1.46905 * 110.99871 * 299.99890 * 12 2 1 14 14 C 1.53000 * 109.47123 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.47398 * 59.99875 * 14 13 12 16 16 O 1.42903 * 109.46726 * 299.99631 * 14 13 12 17 17 C 1.50699 * 109.47083 * 179.97438 * 14 13 12 18 18 H 1.08000 * 119.99792 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47438 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47045 * 120.00577 * 21 19 17 24 24 H 1.48501 * 109.46950 * 240.00369 * 21 19 17 25 25 H 1.09003 * 109.46872 * 300.00242 * 1 2 3 26 26 H 1.08998 * 109.47177 * 59.99815 * 1 2 3 27 27 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47535 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46619 * 300.00004 * 3 2 1 30 30 H 1.09007 * 109.46919 * 59.99488 * 3 2 1 31 31 H 1.09000 * 109.47261 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46863 * 300.00200 * 4 2 1 33 33 H 1.09000 * 109.47203 * 299.99883 * 5 4 2 34 34 H 1.09001 * 109.47275 * 60.00025 * 5 4 2 35 35 H 1.08001 * 120.00164 * 359.97438 * 7 6 5 36 36 H 1.07994 * 120.00223 * 180.23288 * 8 7 6 37 37 H 1.08006 * 119.99450 * 179.72450 * 9 8 7 38 38 H 1.07996 * 120.00396 * 179.97438 * 10 9 8 39 39 H 1.08001 * 120.00167 * 179.97438 * 11 10 9 40 40 H 1.00906 * 111.00466 * 176.04881 * 12 2 1 41 41 H 1.08992 * 109.47078 * 59.99994 * 13 12 2 42 42 H 1.09004 * 109.46829 * 299.99640 * 13 12 2 43 43 H 0.96700 * 114.00234 * 300.00043 * 16 14 13 44 44 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5300 -0.0001 -2.4984 6 6 2.0329 -0.7102 -3.7289 7 6 3.2380 -0.3406 -4.2962 8 6 3.7016 -0.9952 -5.4221 9 6 2.9549 -2.0124 -5.9866 10 6 1.7473 -2.3785 -5.4224 11 6 1.2860 -1.7271 -4.2938 12 7 2.0196 -0.6925 1.1994 13 6 1.5486 -0.0264 2.4211 14 6 2.0781 -0.7742 3.6464 15 1 3.1680 -0.7737 3.6294 16 8 1.6020 -2.1214 3.6246 17 6 1.5954 -0.0905 4.8996 18 1 0.9735 0.7897 4.8291 19 6 1.9478 -0.5886 6.1360 20 7 2.7055 -1.6601 6.2217 21 14 1.3488 0.2586 7.6894 22 1 0.5173 1.4333 7.3235 23 1 0.5364 -0.6923 8.4899 24 1 2.5163 0.7079 8.4897 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7218 -1.2490 32 1 1.6767 -1.7490 -1.2491 33 1 0.4400 -0.0001 -2.4984 34 1 1.8934 1.0276 -2.4984 35 1 3.8190 0.4574 -3.8580 36 1 4.6449 -0.7090 -5.8631 37 1 3.3150 -2.5208 -6.8689 38 1 1.1637 -3.1729 -5.8637 39 1 0.3423 -2.0128 -3.8531 40 1 3.0262 -0.7626 1.1910 41 1 0.4588 -0.0265 2.4379 42 1 1.9122 1.0011 2.4379 43 1 0.6381 -2.1982 3.6380 44 1 2.9536 -2.0103 7.0916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929501310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:22 Heat of formation + Delta-G solvation = -42.540084 kcal Electronic energy + Delta-G solvation = -21272.802570 eV Core-core repulsion = 18189.172646 eV Total energy + Delta-G solvation = -3083.629924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.58046 -38.25548 -35.62689 -33.54587 -32.04657 -31.02086 -30.87809 -28.17977 -27.54225 -27.12250 -24.98500 -23.41801 -22.69653 -21.14973 -20.37686 -18.61777 -16.99803 -16.78386 -15.82570 -15.48096 -15.06322 -14.59446 -14.39825 -14.36668 -14.10784 -13.77679 -13.53119 -13.07212 -13.02462 -12.97135 -12.63671 -12.34692 -12.05588 -11.86814 -11.29729 -11.28235 -11.22701 -11.14876 -10.96636 -10.89354 -10.78604 -10.65588 -10.36434 -10.19047 -9.99446 -9.05812 -8.93346 -8.78302 -8.54915 -8.02378 -7.64630 -5.97574 -4.15714 1.23074 1.26351 3.27778 3.35992 3.39096 3.64656 4.37842 4.57651 4.69844 4.73890 4.85831 4.97154 5.04629 5.15783 5.27566 5.29979 5.36784 5.45270 5.50287 5.54606 5.64369 5.79822 5.88139 5.90325 5.96737 5.98986 6.11329 6.18024 6.21341 6.29520 6.34292 6.35546 6.36959 6.48958 6.50681 6.56781 6.67359 6.88160 6.95176 7.71617 7.74610 7.88979 8.03746 8.25317 8.88739 9.50101 9.66865 11.06576 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039332 B = 0.002917 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.725948 B = 9595.111087 C = 9754.299457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.108 3.892 3 C -0.184 4.184 4 C -0.096 4.096 5 C -0.084 4.084 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.131 4.131 10 C -0.119 4.119 11 C -0.117 4.117 12 N -0.669 5.669 13 C 0.031 3.969 14 C 0.234 3.766 15 H 0.049 0.951 16 O -0.555 6.555 17 C -0.572 4.572 18 H 0.054 0.946 19 C 0.079 3.921 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.335 0.665 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.342 0.658 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 2.924 -22.188 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 C -0.243 4.243 4 C -0.134 4.134 5 C -0.122 4.122 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.299 5.299 13 C -0.097 4.097 14 C 0.176 3.824 15 H 0.067 0.933 16 O -0.356 6.356 17 C -0.610 4.610 18 H 0.072 0.928 19 C -0.127 4.127 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.185 0.815 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.387 2.196 -22.071 22.223 hybrid contribution -0.216 1.490 0.960 1.786 sum -1.603 3.686 -21.111 21.490 Atomic orbital electron populations 1.21909 0.94414 1.02248 1.01085 1.20910 0.95361 0.90992 0.91128 1.22634 1.01000 0.98674 1.01986 1.21522 1.00394 0.99780 0.91707 1.20795 1.01162 0.98863 0.91373 1.20006 0.94683 0.96285 0.96415 1.21078 0.96015 1.00338 0.96293 1.21134 0.99693 0.96531 0.96418 1.21115 0.95386 0.98055 1.00301 1.21144 0.96436 0.99765 0.96373 1.21101 1.00112 0.96177 0.96160 1.60660 1.15747 1.52811 1.00726 1.22951 1.00070 0.95939 0.90774 1.19307 0.94709 0.79934 0.88488 0.93287 1.86552 1.23355 1.28883 1.96860 1.21684 1.34241 1.13474 0.91616 0.92754 1.25037 0.94238 0.94431 0.99034 1.70096 1.34333 1.20961 1.24047 0.86637 0.78680 0.79654 0.83513 1.19783 1.20870 1.20940 0.92467 0.92917 0.91988 0.93001 0.92575 0.92126 0.92200 0.91000 0.90622 0.90889 0.86214 0.86309 0.86408 0.86253 0.86046 0.84754 0.91880 0.95774 0.81453 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.89 37.16 0.29 -1.57 16 2 C 0.11 1.49 0.74 -131.60 -0.10 1.40 16 3 C -0.18 -2.40 7.88 37.16 0.29 -2.11 16 4 C -0.10 -1.18 4.51 -26.73 -0.12 -1.30 16 5 C -0.08 -0.86 4.64 -27.88 -0.13 -0.99 16 6 C -0.07 -0.78 5.13 -104.62 -0.54 -1.32 16 7 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 8 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 9 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 11 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 12 N -0.67 -11.78 5.96 -99.96 -0.60 -12.38 16 13 C 0.03 0.64 4.50 -3.82 -0.02 0.62 16 14 C 0.23 5.95 3.03 -27.88 -0.08 5.87 16 15 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 16 O -0.55 -14.65 12.60 -35.23 -0.44 -15.09 16 17 C -0.57 -15.78 8.76 -34.44 -0.30 -16.08 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 20 N -0.86 -25.68 12.84 55.43 0.71 -24.97 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16 26 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 30 H 0.06 0.88 6.40 -51.93 -0.33 0.54 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.74 6.37 -51.93 -0.33 0.41 16 34 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.33 5.97 8.72 -39.29 -0.34 5.63 16 41 H 0.06 1.28 6.30 -51.93 -0.33 0.95 16 42 H 0.02 0.49 6.30 -51.93 -0.33 0.16 16 43 H 0.34 8.20 9.04 45.56 0.41 8.61 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -30.66 350.10 -9.18 -39.84 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.35 Total: 12.17 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.76 Total: -21.12 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.12 Total: -37.34 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.44 Total: -15.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.66 -9.18 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929501310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.703 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds