Wall clock time and date at job start Mon Mar 30 2020 20:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46852 * 299.99782 * 3 2 1 6 6 H 1.48492 * 109.47224 * 59.99830 * 3 2 1 7 7 C 1.37881 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99434 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.53046 * 109.45665 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.30793 * 181.38274 * 10 9 7 12 12 N 1.46923 * 108.77575 * 305.36150 * 11 10 9 13 13 C 1.34778 * 120.63136 * 233.60857 * 12 11 10 14 14 O 1.21285 * 119.99524 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00059 * 0.02562 * 13 12 11 16 16 C 1.53000 * 109.47011 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.64272 * 304.58301 * 16 15 13 18 18 C 1.53030 * 109.63922 * 65.00199 * 16 15 13 19 19 C 1.50066 * 110.14416 * 169.11744 * 18 16 15 20 20 C 1.29443 * 124.07730 * 342.87354 * 19 18 16 21 21 C 1.50068 * 124.07790 * 0.48578 * 20 19 18 22 22 C 1.53043 * 110.13831 * 342.83754 * 21 20 19 23 23 C 1.46931 * 118.73730 * 53.61542 * 12 11 10 24 24 C 1.53043 * 109.45895 * 300.06128 * 9 7 2 25 25 H 0.97006 * 120.00397 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.45340 * 60.02975 * 9 7 2 27 27 H 1.08990 * 109.49711 * 301.33342 * 10 9 7 28 28 H 1.08999 * 109.49785 * 61.43589 * 10 9 7 29 29 H 1.08996 * 109.58476 * 65.15647 * 11 10 9 30 30 H 1.09006 * 109.58092 * 185.57719 * 11 10 9 31 31 H 1.08994 * 109.47009 * 300.00240 * 15 13 12 32 32 H 1.09006 * 109.46687 * 60.00343 * 15 13 12 33 33 H 1.08994 * 109.36079 * 289.32480 * 18 16 15 34 34 H 1.08999 * 109.35697 * 49.05496 * 18 16 15 35 35 H 1.08005 * 117.96243 * 162.89498 * 19 18 16 36 36 H 1.08006 * 117.96131 * 180.46995 * 20 19 18 37 37 H 1.08998 * 109.35378 * 103.05283 * 21 20 19 38 38 H 1.08999 * 109.35833 * 222.78069 * 21 20 19 39 39 H 1.08997 * 109.65517 * 289.77363 * 22 21 20 40 40 H 1.08991 * 109.63590 * 169.13710 * 22 21 20 41 41 H 1.09001 * 109.58511 * 186.59744 * 23 12 11 42 42 H 1.09004 * 109.58611 * 66.17544 * 23 12 11 43 43 H 1.09000 * 109.49738 * 298.57248 * 24 9 7 44 44 H 1.09003 * 109.49388 * 58.63362 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 -0.0344 12 7 0.5223 -5.0088 1.0825 13 6 0.5117 -6.0349 1.9564 14 8 -0.2814 -6.0416 2.8740 15 6 1.4852 -7.1736 1.7933 16 6 1.2639 -8.1974 2.9086 17 1 1.3405 -7.7053 3.8781 18 6 -0.1224 -8.8282 2.7601 19 6 -0.2526 -10.0111 3.6743 20 6 0.7508 -10.6176 4.2229 21 6 2.1838 -10.2162 4.0298 22 6 2.3162 -9.3085 2.8047 23 6 -0.4204 -3.8913 1.2286 24 6 0.3695 -2.5789 1.2491 25 1 -0.4851 0.8401 -0.0004 26 1 0.6251 -2.5570 -0.8900 27 1 2.8882 -3.5914 -0.8770 28 1 2.8555 -3.6193 0.9030 29 1 0.9372 -5.0711 -0.9777 30 1 2.1751 -5.8175 0.0653 31 1 1.3281 -7.6501 0.8258 32 1 2.5044 -6.7910 1.8488 33 1 -0.8840 -8.0906 3.0130 34 1 -0.2627 -9.1537 1.7293 35 1 -1.2452 -10.3795 3.8876 36 1 0.5437 -11.4652 4.8595 37 1 2.5319 -9.6828 4.9143 38 1 2.7923 -11.1086 3.8831 39 1 2.1475 -9.8894 1.8980 40 1 3.3130 -8.8681 2.7812 41 1 -0.9736 -3.9995 2.1616 42 1 -1.1146 -3.8865 0.3882 43 1 0.9968 -2.5460 2.1399 44 1 -0.3226 -1.7369 1.2602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935319570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:51 Heat of formation + Delta-G solvation = -63.671529 kcal Electronic energy + Delta-G solvation = -21966.073111 eV Core-core repulsion = 18881.526859 eV Total energy + Delta-G solvation = -3084.546252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27634 -39.41854 -38.16714 -35.34675 -33.83681 -32.84018 -31.82554 -31.52810 -28.68453 -27.53963 -24.73585 -24.14416 -23.73747 -22.31010 -21.19188 -19.62034 -18.85920 -18.52499 -17.80883 -16.91033 -16.62150 -16.50760 -16.31564 -15.20740 -14.98915 -14.90241 -14.72924 -14.40239 -14.36215 -13.87755 -13.73019 -13.46727 -13.33688 -13.13260 -13.02166 -12.84327 -12.82684 -12.42987 -12.40497 -12.15002 -11.92724 -11.59544 -11.45820 -11.41873 -11.03648 -10.95748 -10.81302 -10.53328 -10.38963 -9.80490 -9.47986 -8.08154 -6.22185 1.39593 1.42528 1.46164 1.52601 1.73709 2.17005 2.43330 3.18553 3.60020 3.75889 3.86906 4.08725 4.15990 4.29900 4.34134 4.37530 4.44812 4.52373 4.53994 4.59781 4.64442 4.71259 4.77279 4.81254 4.85800 4.91552 4.98569 5.03660 5.08611 5.13703 5.19635 5.27081 5.28729 5.42847 5.48311 5.54299 5.56302 5.68949 5.83515 5.98472 6.11833 6.13410 6.38136 6.62373 6.90307 7.29473 7.46269 8.95357 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041768 B = 0.003428 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.208699 B = 8166.218744 C = 8430.686859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.118 4.118 11 C 0.110 3.890 12 N -0.607 5.607 13 C 0.503 3.497 14 O -0.589 6.589 15 C -0.127 4.127 16 C -0.068 4.068 17 H 0.053 0.947 18 C -0.091 4.091 19 C -0.166 4.166 20 C -0.162 4.162 21 C -0.093 4.093 22 C -0.110 4.110 23 C 0.120 3.880 24 C -0.111 4.111 25 H 0.259 0.741 26 H 0.002 0.998 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 -20.234 2.426 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.156 4.156 11 C -0.011 4.011 12 N -0.340 5.340 13 C 0.294 3.706 14 O -0.470 6.470 15 C -0.167 4.167 16 C -0.087 4.087 17 H 0.072 0.928 18 C -0.128 4.128 19 C -0.184 4.184 20 C -0.180 4.180 21 C -0.130 4.130 22 C -0.148 4.148 23 C -0.003 4.003 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.020 0.980 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.663 -20.117 2.883 20.850 hybrid contribution -0.293 1.636 0.173 1.671 sum 4.370 -18.481 3.056 19.235 Atomic orbital electron populations 1.69992 1.07124 1.26972 1.51588 1.25736 0.95646 1.02363 0.95023 0.85616 0.79247 0.80054 0.77391 1.19006 1.20667 1.21151 1.21640 0.93112 0.92156 1.49963 0.92796 1.18619 0.93172 0.92806 0.92830 1.21885 0.98125 0.94279 1.01317 1.21983 0.91526 0.99071 0.88566 1.48353 1.35945 1.20716 1.28946 1.21483 0.84832 0.83770 0.80563 1.90608 1.42735 1.79684 1.33994 1.21850 0.99161 0.93300 1.02345 1.20915 0.95547 0.94796 0.97473 0.92800 1.20564 0.97765 0.95494 0.98981 1.22159 0.99007 0.97544 0.99735 1.22256 0.95255 1.00143 1.00347 1.20509 0.93861 1.00116 0.98467 1.21670 0.98491 0.95811 0.98788 1.21476 0.91682 0.86398 1.00731 1.21757 0.99263 0.95551 0.98403 0.93130 0.97995 0.90760 0.93388 0.90897 0.86489 0.86356 0.86803 0.92277 0.90722 0.88173 0.87077 0.91045 0.89251 0.90596 0.89981 0.91785 0.92428 0.96122 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.48 11.30 21.45 0.24 -52.23 16 2 C 0.01 0.59 5.30 84.66 0.45 1.03 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.53 -28.42 8.56 25.60 0.22 -28.20 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.11 2.06 -11.51 -0.02 2.09 16 10 C -0.12 -4.28 5.30 30.67 0.16 -4.12 16 11 C 0.11 3.12 6.34 86.36 0.55 3.67 16 12 N -0.61 -20.72 2.97 -818.89 -2.43 -23.15 16 13 C 0.50 16.24 7.45 87.66 0.65 16.90 16 14 O -0.59 -23.51 13.44 -3.04 -0.04 -23.55 16 15 C -0.13 -2.70 3.53 29.85 0.11 -2.59 16 16 C -0.07 -1.49 1.88 -10.65 -0.02 -1.51 16 17 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 18 C -0.09 -2.17 5.03 29.66 0.15 -2.02 16 19 C -0.17 -3.54 9.80 27.04 0.27 -3.27 16 20 C -0.16 -2.91 9.80 27.04 0.27 -2.65 16 21 C -0.09 -1.40 6.12 29.66 0.18 -1.21 16 22 C -0.11 -1.68 5.31 30.74 0.16 -1.51 16 23 C 0.12 4.93 6.43 86.36 0.56 5.48 16 24 C -0.11 -5.32 5.15 30.67 0.16 -5.16 16 25 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.12 2.27 5.93 -2.38 -0.01 2.26 16 31 H 0.12 1.89 7.91 -2.39 -0.02 1.87 16 32 H 0.11 1.99 7.69 -2.38 -0.02 1.97 16 33 H 0.06 1.81 6.22 -2.39 -0.01 1.80 16 34 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.10 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 2.74 7.01 -2.39 -0.02 2.73 16 42 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 3.78 6.03 -2.39 -0.01 3.77 16 Total: -1.00 -65.42 337.06 4.57 -60.84 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.95 Total: 15.91 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.83 Total: -23.07 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.19 Total: -75.39 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -65.42 4.57 -60.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935319570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.827 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds