Wall clock time and date at job start Mon Mar 30 2020 20:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47041 * 2 1 4 4 C 1.53002 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47117 * 184.57182 * 4 3 2 6 6 C 1.36937 * 119.99999 * 274.39629 * 5 4 3 7 7 H 1.07993 * 120.00097 * 318.84367 * 6 5 4 8 8 C 1.38815 * 119.99766 * 138.84007 * 6 5 4 9 9 N 1.31620 * 119.99738 * 162.14146 * 8 6 5 10 10 Si 1.86798 * 120.00180 * 342.14605 * 8 6 5 11 11 H 1.48497 * 109.47135 * 95.30242 * 10 8 6 12 12 H 1.48499 * 109.46949 * 215.29641 * 10 8 6 13 13 H 1.48492 * 109.47124 * 335.29788 * 10 8 6 14 14 C 1.46493 * 119.99925 * 94.39449 * 5 4 3 15 15 C 1.50699 * 109.47139 * 83.95887 * 14 5 4 16 16 C 1.38287 * 119.94250 * 261.41617 * 15 14 5 17 17 C 1.38126 * 120.05349 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.02669 * 180.02562 * 17 16 15 19 19 C 1.38756 * 119.94434 * 0.02562 * 17 16 15 20 20 O 1.35897 * 120.05472 * 179.97438 * 19 17 16 21 21 C 1.38707 * 119.89074 * 359.97438 * 19 17 16 22 22 C 1.38166 * 119.94210 * 0.02562 * 21 19 17 23 23 C 1.50696 * 119.97287 * 179.97438 * 22 21 19 24 24 H 1.08990 * 109.47025 * 60.00616 * 1 2 3 25 25 H 1.09009 * 109.46609 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47183 * 300.00018 * 1 2 3 27 27 H 1.08995 * 109.47472 * 239.99590 * 2 1 3 28 28 H 1.09002 * 109.46996 * 120.00060 * 2 1 3 29 29 H 1.09000 * 109.47642 * 60.00136 * 3 2 1 30 30 H 1.09001 * 109.47106 * 299.99365 * 3 2 1 31 31 H 1.09001 * 109.47279 * 64.57241 * 4 3 2 32 32 H 1.08994 * 109.47119 * 304.56840 * 4 3 2 33 33 H 0.96999 * 120.00306 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47221 * 323.96127 * 14 5 4 35 35 H 1.09001 * 109.47583 * 203.95954 * 14 5 4 36 36 H 1.07999 * 119.97394 * 0.27470 * 16 15 14 37 37 H 1.09002 * 109.46712 * 90.00775 * 18 17 16 38 38 H 1.09002 * 109.47106 * 209.99844 * 18 17 16 39 39 H 1.08994 * 109.47051 * 330.00345 * 18 17 16 40 40 H 0.96702 * 114.00253 * 89.99732 * 20 19 17 41 41 H 1.07996 * 120.03151 * 179.97438 * 21 19 17 42 42 H 1.09003 * 109.47423 * 93.54037 * 23 22 21 43 43 H 1.09006 * 109.47381 * 213.54234 * 23 22 21 44 44 H 1.08997 * 109.47300 * 333.53888 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8193 0.1107 6 6 4.2013 3.5871 -1.0141 7 1 4.6078 3.1535 -1.9158 8 6 3.8237 4.9228 -0.9953 9 7 4.2680 5.7453 -1.9219 10 14 2.6852 5.5528 0.3449 11 1 3.4924 6.1392 1.4448 12 1 1.7861 6.5923 -0.2176 13 1 1.8721 4.4281 0.8729 14 6 4.3936 3.3748 1.4242 15 6 5.7990 2.9762 1.7943 16 6 6.0121 1.9021 2.6388 17 6 7.2993 1.5345 2.9791 18 6 7.5309 0.3635 3.8990 19 6 8.3790 2.2443 2.4732 20 8 9.6463 1.8848 2.8070 21 6 8.1625 3.3212 1.6263 22 6 6.8730 3.6850 1.2890 23 6 6.6371 4.8553 0.3694 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.9338 1.0011 -0.9272 32 1 3.9330 0.8595 0.8471 33 1 4.0045 6.6787 -1.9086 34 1 3.6983 2.9893 2.1699 35 1 4.3218 4.4618 1.3882 36 1 5.1716 1.3472 3.0287 37 1 7.6212 -0.5491 3.3098 38 1 8.4485 0.5224 4.4655 39 1 6.6906 0.2702 4.5869 40 1 10.0430 1.2387 2.2067 41 1 9.0012 3.8755 1.2317 42 1 6.5518 4.4993 -0.6573 43 1 5.7156 5.3625 0.6558 44 1 7.4729 5.5508 0.4446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140202706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:38 Heat of formation + Delta-G solvation = -36.412486 kcal Electronic energy + Delta-G solvation = -22448.596293 eV Core-core repulsion = 19365.232082 eV Total energy + Delta-G solvation = -3083.364211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00145 -38.75931 -37.30607 -35.54822 -34.32071 -33.68071 -31.66648 -30.07976 -29.51698 -27.26062 -25.62631 -25.43605 -23.19729 -22.60737 -21.79309 -21.04980 -18.87891 -18.50677 -17.58403 -16.88414 -16.35516 -16.19907 -15.83853 -15.79321 -15.08266 -14.84811 -14.57003 -14.28831 -14.22025 -13.94594 -13.81258 -13.65872 -13.41734 -13.30906 -13.02736 -12.84226 -12.70322 -12.55273 -12.22214 -12.12187 -12.05758 -11.85488 -11.80026 -11.69968 -11.48607 -11.25897 -11.23900 -10.52955 -9.57180 -9.12576 -8.65415 -8.12018 -5.52753 0.38140 0.48107 1.28353 1.40648 1.49105 2.43587 2.67160 3.19897 3.37146 3.50649 3.92348 3.99872 4.09378 4.17452 4.27548 4.33839 4.35012 4.42917 4.56796 4.67821 4.71314 4.73055 4.83100 4.86414 4.87654 4.96146 5.01008 5.05128 5.06387 5.11744 5.18418 5.20165 5.29477 5.40269 5.47391 5.51770 5.59353 5.62106 5.64200 5.92442 6.03106 6.05290 6.27313 6.91265 7.05861 7.68124 8.13752 9.06436 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.007129 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.301328 B = 3926.737803 C = 5423.848224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.152 3.848 5 N -0.606 5.606 6 C -0.239 4.239 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.938 5.938 10 Si 0.913 3.087 11 H -0.281 1.281 12 H -0.313 1.313 13 H -0.253 1.253 14 C 0.167 3.833 15 C -0.109 4.109 16 C -0.099 4.099 17 C -0.125 4.125 18 C -0.100 4.100 19 C 0.095 3.905 20 O -0.501 6.501 21 C -0.157 4.157 22 C -0.067 4.067 23 C -0.090 4.090 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -12.230 10.444 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.028 3.972 5 N -0.328 5.328 6 C -0.369 4.369 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.582 5.582 10 Si 0.743 3.257 11 H -0.208 1.208 12 H -0.243 1.243 13 H -0.177 1.177 14 C 0.043 3.957 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.157 4.157 19 C 0.050 3.950 20 O -0.313 6.313 21 C -0.176 4.176 22 C -0.068 4.068 23 C -0.147 4.147 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.262 0.738 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.645 -11.705 10.827 16.163 hybrid contribution -0.455 0.942 -0.527 1.171 sum 2.190 -10.764 10.300 15.058 Atomic orbital electron populations 1.21756 0.95587 1.01993 1.01298 1.21447 0.96113 0.95474 1.02277 1.22073 0.97838 0.96934 1.00236 1.20994 0.92126 0.84610 0.99509 1.44177 1.74537 1.12078 1.01959 1.18421 1.35037 0.92296 0.91178 0.94488 1.25787 0.98463 0.96925 0.97797 1.69918 1.46234 1.04353 1.37706 0.86349 0.80991 0.77939 0.80397 1.20837 1.24251 1.17722 1.20203 0.90757 0.97172 0.87583 1.20710 0.96845 0.96724 0.96901 1.20958 0.96794 0.96263 0.97762 1.20405 0.92217 0.99078 1.00869 1.20643 1.03132 0.94290 0.97601 1.18196 0.84557 0.95241 0.97016 1.84715 1.25413 1.65492 1.55708 1.21333 0.96512 0.99726 0.99986 1.19768 0.92814 0.97329 0.96850 1.20669 1.00225 0.94921 0.98873 0.93732 0.91242 0.93116 0.91997 0.90936 0.93799 0.94597 0.94497 0.91840 0.93110 0.91976 0.93660 0.84293 0.90220 0.90993 0.90572 0.73796 0.85410 0.91708 0.93515 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.11 -2.96 5.93 30.59 0.18 -2.78 16 3 C -0.13 -4.53 5.52 30.59 0.17 -4.36 16 4 C 0.15 5.70 5.69 86.38 0.49 6.19 16 5 N -0.61 -27.19 2.02 -706.35 -1.43 -28.62 16 6 C -0.24 -12.84 7.96 84.03 0.67 -12.17 16 7 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 8 C 0.01 0.42 3.65 84.86 0.31 0.73 16 9 N -0.94 -55.71 13.97 21.65 0.30 -55.41 16 10 Si 0.91 44.91 24.38 68.60 1.67 46.58 16 11 H -0.28 -13.45 6.74 99.48 0.67 -12.78 16 12 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 13 H -0.25 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.17 6.98 3.87 85.63 0.33 7.31 16 15 C -0.11 -4.17 5.45 -19.85 -0.11 -4.28 16 16 C -0.10 -3.08 9.32 22.25 0.21 -2.87 16 17 C -0.13 -3.50 5.89 -19.77 -0.12 -3.62 16 18 C -0.10 -1.99 9.79 71.24 0.70 -1.29 16 19 C 0.09 2.82 6.68 22.51 0.15 2.97 16 20 O -0.50 -12.12 12.55 -92.39 -1.16 -13.28 16 21 C -0.16 -5.38 9.63 22.36 0.22 -5.17 16 22 C -0.07 -2.65 5.88 -19.88 -0.12 -2.77 16 23 C -0.09 -3.99 8.11 71.23 0.58 -3.42 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 32 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.06 2.31 7.99 -2.39 -0.02 2.29 16 35 H 0.05 2.11 2.20 -2.39 -0.01 2.10 16 36 H 0.14 3.63 8.05 -2.91 -0.02 3.61 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.38 7.53 -2.39 -0.02 1.37 16 39 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 40 H 0.40 5.94 9.06 -74.06 -0.67 5.27 16 41 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.06 3.29 6.90 -2.39 -0.02 3.27 16 43 H 0.05 2.25 4.65 -2.38 -0.01 2.24 16 44 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 Total: -1.00 -63.79 345.37 4.03 -59.76 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.27 Total: 19.22 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.37 Total: -28.25 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.13 Total: -84.03 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.16 Total: -13.28 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -63.79 4.03 -59.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140202706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds