Wall clock time and date at job start Mon Mar 30 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47544 * 2 1 4 4 C 1.38142 * 120.02688 * 265.00156 * 3 2 1 5 5 C 1.38265 * 120.05677 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.94607 * 179.72436 * 5 4 3 7 7 N 1.46893 * 109.47457 * 89.99845 * 6 5 4 8 8 C 1.46899 * 110.99997 * 293.95447 * 7 6 5 9 9 C 1.46900 * 111.00249 * 169.99752 * 7 6 5 10 10 C 1.50692 * 109.47333 * 189.99859 * 9 7 6 11 11 H 1.08007 * 120.00278 * 0.02562 * 10 9 7 12 12 C 1.37884 * 120.00054 * 180.02562 * 10 9 7 13 13 N 1.31508 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99845 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46875 * 90.00258 * 14 12 10 16 16 H 1.48497 * 109.47043 * 209.99776 * 14 12 10 17 17 H 1.48494 * 109.47296 * 329.99761 * 14 12 10 18 18 C 1.38268 * 120.11063 * 359.97438 * 5 4 3 19 19 C 1.38149 * 120.05738 * 0.02562 * 18 5 4 20 20 C 1.50696 * 120.03117 * 180.02562 * 19 18 5 21 21 C 1.52998 * 109.47397 * 264.97752 * 20 19 18 22 22 C 1.38729 * 119.94092 * 359.97438 * 19 18 5 23 23 O 1.35900 * 120.05757 * 180.02562 * 22 19 18 24 24 H 1.09003 * 109.47634 * 300.00053 * 1 2 3 25 25 H 1.08998 * 109.47317 * 60.00364 * 1 2 3 26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47383 * 239.99496 * 2 1 3 28 28 H 1.09001 * 109.47070 * 120.00094 * 2 1 3 29 29 H 1.07997 * 119.97374 * 0.03992 * 4 3 2 30 30 H 1.09002 * 109.46668 * 209.99879 * 6 5 4 31 31 H 1.09003 * 109.46732 * 329.99369 * 6 5 4 32 32 H 1.08997 * 109.46935 * 60.00109 * 8 7 6 33 33 H 1.09007 * 109.47064 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47082 * 300.00185 * 8 7 6 35 35 H 1.09000 * 109.47174 * 310.00521 * 9 7 6 36 36 H 1.09006 * 109.46853 * 69.99917 * 9 7 6 37 37 H 0.96995 * 120.00277 * 180.02562 * 13 12 10 38 38 H 1.08005 * 119.97190 * 180.02562 * 18 5 4 39 39 H 1.09006 * 109.47035 * 24.98273 * 20 19 18 40 40 H 1.08997 * 109.47149 * 144.97509 * 20 19 18 41 41 H 1.08994 * 109.47145 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47231 * 300.00078 * 21 20 19 43 43 H 1.09009 * 109.46831 * 60.00012 * 21 20 19 44 44 H 0.96695 * 113.99980 * 269.97704 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3611 2.0377 -1.1915 5 6 2.8226 3.3410 -1.1921 6 6 3.1864 4.0096 -2.4928 7 7 2.0046 4.6871 -3.0425 8 6 0.9716 3.7156 -3.4259 9 6 2.3697 5.5434 -4.1789 10 6 1.1920 6.4034 -4.5586 11 1 0.2650 6.3224 -4.0103 12 6 1.2977 7.2939 -5.6061 13 7 2.4266 7.3930 -6.2734 14 14 -0.1621 8.3604 -6.0762 15 1 -0.1104 9.6339 -5.3142 16 1 -0.1136 8.6521 -7.5315 17 1 -1.4224 7.6431 -5.7569 18 6 2.9559 4.0303 -0.0010 19 6 2.6285 3.4178 1.1933 20 6 2.7734 4.1698 2.4911 21 6 4.1306 3.8465 3.1192 22 6 2.1652 2.1102 1.1966 23 8 1.8419 1.5055 2.3699 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2573 1.5017 -2.1233 30 1 3.9755 4.7408 -2.3172 31 1 3.5374 3.2592 -3.2012 32 1 0.6695 3.1417 -2.5498 33 1 0.1081 4.2439 -3.8301 34 1 1.3709 3.0403 -4.1826 35 1 3.2092 6.1799 -3.8993 36 1 2.6530 4.9202 -5.0272 37 1 2.5011 8.0196 -7.0100 38 1 3.3162 5.0485 -0.0041 39 1 2.7074 5.2409 2.2998 40 1 1.9772 3.8731 3.1738 41 1 4.2355 4.3908 4.0576 42 1 4.1965 2.7756 3.3105 43 1 4.9268 4.1434 2.4364 44 1 2.5778 1.0366 2.7865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144137969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:05 Heat of formation + Delta-G solvation = -39.109073 kcal Electronic energy + Delta-G solvation = -21694.533188 eV Core-core repulsion = 18611.052044 eV Total energy + Delta-G solvation = -3083.481144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19201 -37.39687 -35.80599 -35.01296 -33.09852 -32.27136 -29.70105 -29.03198 -27.07417 -26.32099 -24.11286 -23.83098 -23.45912 -20.87793 -20.31129 -19.72557 -18.17320 -16.40519 -16.30785 -15.53345 -15.07621 -14.78195 -14.31490 -14.18760 -14.05168 -13.79401 -13.64130 -13.39252 -12.98143 -12.80443 -12.62477 -12.16131 -11.96535 -11.88470 -11.67140 -11.41237 -11.35681 -11.26570 -11.02421 -10.89913 -10.85598 -10.77654 -10.55406 -10.40337 -10.12741 -9.83695 -9.21855 -8.46443 -8.43485 -8.19993 -7.22632 -6.02249 -4.03345 1.40187 1.49982 3.33033 3.38754 3.42761 3.71668 4.28192 4.44359 4.70350 4.76312 4.91070 5.09895 5.19158 5.29372 5.30853 5.34320 5.37289 5.43929 5.49987 5.58626 5.59741 5.81431 5.82951 5.85725 5.92340 5.94226 6.03935 6.11880 6.17129 6.22809 6.28715 6.30553 6.38476 6.59038 6.65000 6.77963 6.91364 7.00434 7.28435 7.33912 7.69733 7.80620 8.08179 8.20328 8.54952 9.04416 9.60812 11.08683 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.003996 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.395642 B = 7005.183349 C = 7652.038948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.103 4.103 5 C -0.060 4.060 6 C 0.089 3.911 7 N -0.534 5.534 8 C 0.035 3.965 9 C 0.192 3.808 10 C -0.506 4.506 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.081 4.081 21 C -0.143 4.143 22 C 0.094 3.906 23 O -0.492 6.492 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.009 0.991 35 H 0.030 0.970 36 H -0.009 1.009 37 H 0.261 0.739 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -13.384 16.248 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.108 4.108 4 C -0.122 4.122 5 C -0.060 4.060 6 C -0.039 4.039 7 N -0.258 5.258 8 C -0.113 4.113 9 C 0.068 3.932 10 C -0.545 4.545 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.200 4.200 22 C 0.050 3.950 23 O -0.301 6.301 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.028 0.972 35 H 0.048 0.952 36 H 0.009 0.991 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.740 -12.738 16.331 20.785 hybrid contribution 0.069 -0.031 -0.992 0.995 sum 1.810 -12.769 15.339 20.040 Atomic orbital electron populations 1.21707 0.94667 1.01254 1.02517 1.20337 0.96382 0.92346 1.02034 1.20075 1.01331 0.96640 0.92743 1.20831 0.99665 0.94823 0.96875 1.19957 0.97342 0.93323 0.95418 1.21049 0.94466 0.96648 0.91734 1.62139 1.08110 1.19900 1.35628 1.22277 0.96857 0.94478 0.97706 1.19757 0.97128 0.90946 0.85415 1.21163 0.98568 1.20289 1.14449 0.91848 1.24983 0.96091 0.97265 0.96252 1.69954 1.25156 1.37087 1.21733 0.86497 0.82759 0.80758 0.77407 1.20611 1.21326 1.19856 1.20838 0.99543 0.99619 0.90693 1.20114 1.00226 0.94446 0.95766 1.20412 0.98094 0.99624 0.93717 1.21692 0.96842 1.01107 1.00364 1.17990 1.00985 0.91235 0.84826 1.84818 1.38965 1.71283 1.35067 0.92226 0.92579 0.92824 0.91482 0.91472 0.86195 0.90498 0.95047 0.93301 0.90797 0.97226 0.95200 0.99107 0.92937 0.85619 0.90967 0.90693 0.92529 0.93194 0.92552 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.89 37.15 0.37 -1.18 16 2 C -0.07 -0.78 5.79 -27.89 -0.16 -0.95 16 3 C -0.11 -1.40 5.15 -104.48 -0.54 -1.94 16 4 C -0.10 -1.50 7.60 -39.61 -0.30 -1.80 16 5 C -0.06 -0.96 4.88 -104.60 -0.51 -1.47 16 6 C 0.09 1.63 5.12 -4.98 -0.03 1.60 16 7 N -0.53 -11.74 4.74 -245.83 -1.17 -12.91 16 8 C 0.04 0.72 8.95 60.06 0.54 1.25 16 9 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 10 C -0.51 -14.36 8.46 -34.44 -0.29 -14.65 16 11 H 0.06 1.79 7.12 -52.48 -0.37 1.42 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 14 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -1.33 9.33 -39.60 -0.37 -1.70 16 19 C -0.10 -1.40 5.15 -104.48 -0.54 -1.94 16 20 C -0.08 -0.89 5.79 -27.89 -0.16 -1.06 16 21 C -0.14 -1.27 9.89 37.16 0.37 -0.91 16 22 C 0.09 1.21 6.65 -39.22 -0.26 0.95 16 23 O -0.49 -5.34 11.78 -19.42 -0.23 -5.57 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.07 0.63 7.69 -51.93 -0.40 0.23 16 29 H 0.12 1.66 8.02 -52.49 -0.42 1.24 16 30 H 0.08 1.39 7.87 -51.93 -0.41 0.98 16 31 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.05 0.89 6.16 -51.93 -0.32 0.57 16 33 H 0.07 1.61 6.76 -51.92 -0.35 1.26 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.07 0.83 7.69 -51.93 -0.40 0.43 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.38 2.49 9.06 45.56 0.41 2.90 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -31.07 357.45 -9.16 -40.24 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.87 Total: -0.59 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.00 Total: -17.26 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.43 Total: -39.01 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.23 Total: -5.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.07 -9.16 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144137969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.128 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds