Wall clock time and date at job start Mon Mar 30 2020 20:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47544 * 2 1 4 4 C 1.38142 * 120.02688 * 265.00156 * 3 2 1 5 5 C 1.38265 * 120.05677 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.94607 * 179.72436 * 5 4 3 7 7 N 1.46893 * 109.47457 * 89.99845 * 6 5 4 8 8 C 1.46899 * 110.99997 * 293.95447 * 7 6 5 9 9 C 1.46900 * 111.00249 * 169.99752 * 7 6 5 10 10 C 1.50692 * 109.47333 * 189.99859 * 9 7 6 11 11 H 1.08007 * 120.00278 * 0.02562 * 10 9 7 12 12 C 1.37884 * 120.00054 * 180.02562 * 10 9 7 13 13 N 1.31508 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99845 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46875 * 90.00258 * 14 12 10 16 16 H 1.48497 * 109.47043 * 209.99776 * 14 12 10 17 17 H 1.48494 * 109.47296 * 329.99761 * 14 12 10 18 18 C 1.38268 * 120.11063 * 359.97438 * 5 4 3 19 19 C 1.38149 * 120.05738 * 0.02562 * 18 5 4 20 20 C 1.50696 * 120.03117 * 180.02562 * 19 18 5 21 21 C 1.52998 * 109.47397 * 264.97752 * 20 19 18 22 22 C 1.38729 * 119.94092 * 359.97438 * 19 18 5 23 23 O 1.35900 * 120.05757 * 180.02562 * 22 19 18 24 24 H 1.09003 * 109.47634 * 300.00053 * 1 2 3 25 25 H 1.08998 * 109.47317 * 60.00364 * 1 2 3 26 26 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47383 * 239.99496 * 2 1 3 28 28 H 1.09001 * 109.47070 * 120.00094 * 2 1 3 29 29 H 1.07997 * 119.97374 * 0.03992 * 4 3 2 30 30 H 1.09002 * 109.46668 * 209.99879 * 6 5 4 31 31 H 1.09003 * 109.46732 * 329.99369 * 6 5 4 32 32 H 1.08997 * 109.46935 * 60.00109 * 8 7 6 33 33 H 1.09007 * 109.47064 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47082 * 300.00185 * 8 7 6 35 35 H 1.09000 * 109.47174 * 310.00521 * 9 7 6 36 36 H 1.09006 * 109.46853 * 69.99917 * 9 7 6 37 37 H 0.96995 * 120.00277 * 180.02562 * 13 12 10 38 38 H 1.08005 * 119.97190 * 180.02562 * 18 5 4 39 39 H 1.09006 * 109.47035 * 24.98273 * 20 19 18 40 40 H 1.08997 * 109.47149 * 144.97509 * 20 19 18 41 41 H 1.08994 * 109.47145 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47231 * 300.00078 * 21 20 19 43 43 H 1.09009 * 109.46831 * 60.00012 * 21 20 19 44 44 H 0.96695 * 113.99980 * 269.97704 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3611 2.0377 -1.1915 5 6 2.8226 3.3410 -1.1921 6 6 3.1864 4.0096 -2.4928 7 7 2.0046 4.6871 -3.0425 8 6 0.9716 3.7156 -3.4259 9 6 2.3697 5.5434 -4.1789 10 6 1.1920 6.4034 -4.5586 11 1 0.2650 6.3224 -4.0103 12 6 1.2977 7.2939 -5.6061 13 7 2.4266 7.3930 -6.2734 14 14 -0.1621 8.3604 -6.0762 15 1 -0.1104 9.6339 -5.3142 16 1 -0.1136 8.6521 -7.5315 17 1 -1.4224 7.6431 -5.7569 18 6 2.9559 4.0303 -0.0010 19 6 2.6285 3.4178 1.1933 20 6 2.7734 4.1698 2.4911 21 6 4.1306 3.8465 3.1192 22 6 2.1652 2.1102 1.1966 23 8 1.8419 1.5055 2.3699 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2573 1.5017 -2.1233 30 1 3.9755 4.7408 -2.3172 31 1 3.5374 3.2592 -3.2012 32 1 0.6695 3.1417 -2.5498 33 1 0.1081 4.2439 -3.8301 34 1 1.3709 3.0403 -4.1826 35 1 3.2092 6.1799 -3.8993 36 1 2.6530 4.9202 -5.0272 37 1 2.5011 8.0196 -7.0100 38 1 3.3162 5.0485 -0.0041 39 1 2.7074 5.2409 2.2998 40 1 1.9772 3.8731 3.1738 41 1 4.2355 4.3908 4.0576 42 1 4.1965 2.7756 3.3105 43 1 4.9268 4.1434 2.4364 44 1 2.5778 1.0366 2.7865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144137969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:04 Heat of formation + Delta-G solvation = -58.321572 kcal Electronic energy + Delta-G solvation = -21695.366305 eV Core-core repulsion = 18611.052044 eV Total energy + Delta-G solvation = -3084.314260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24173 -38.76874 -37.13400 -35.91989 -34.81015 -33.69054 -30.94720 -30.02025 -29.02372 -27.81164 -25.53361 -24.98146 -24.52120 -22.57171 -21.27594 -21.02919 -19.13994 -18.50577 -17.42678 -16.85632 -16.54395 -16.05783 -15.96628 -15.67377 -15.13230 -14.99158 -14.74336 -14.35488 -14.26665 -13.92056 -13.76569 -13.59489 -13.45453 -13.09238 -12.98061 -12.91146 -12.67201 -12.58383 -12.36707 -12.33225 -12.18267 -12.10569 -11.91126 -11.77869 -11.65677 -11.26031 -11.07774 -10.62793 -9.52520 -9.34378 -9.00171 -8.21472 -6.31707 0.30966 0.42077 1.40475 1.41989 1.53144 2.39226 2.62185 3.10939 3.35491 3.49765 3.76106 3.79035 3.85262 4.25559 4.28578 4.30777 4.46634 4.48622 4.50340 4.52609 4.57025 4.64554 4.69510 4.73155 4.79438 4.99545 5.02908 5.04896 5.05348 5.11875 5.15090 5.16781 5.22430 5.26951 5.39482 5.42284 5.55561 5.61339 5.63329 5.75120 5.96671 6.03116 6.29997 6.58981 6.83870 6.91854 7.37921 8.89548 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.003996 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.395642 B = 7005.183349 C = 7652.038948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.108 4.108 4 C -0.109 4.109 5 C -0.078 4.078 6 C 0.093 3.907 7 N -0.543 5.543 8 C 0.043 3.957 9 C 0.208 3.792 10 C -0.525 4.525 11 H 0.061 0.939 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.138 4.138 22 C 0.102 3.898 23 O -0.493 6.493 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.013 0.987 35 H 0.006 0.994 36 H -0.036 1.036 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 -14.616 17.974 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.109 4.109 4 C -0.128 4.128 5 C -0.078 4.078 6 C -0.034 4.034 7 N -0.267 5.267 8 C -0.105 4.105 9 C 0.082 3.918 10 C -0.563 4.563 11 H 0.079 0.921 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.196 4.196 22 C 0.058 3.942 23 O -0.305 6.305 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.024 0.976 36 H -0.018 1.018 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.790 -13.997 18.087 22.884 hybrid contribution 0.403 0.268 -1.416 1.496 sum 1.193 -13.729 16.671 21.629 Atomic orbital electron populations 1.21683 0.94707 1.02222 1.01301 1.20406 0.96182 0.90877 1.03474 1.20337 1.00522 0.97854 0.92165 1.20886 0.99815 0.94237 0.97834 1.19732 0.99641 0.94222 0.94243 1.21009 0.92953 0.96409 0.93049 1.62042 1.09960 1.21092 1.33566 1.22201 0.95594 0.93967 0.98719 1.19408 0.95769 0.90793 0.85873 1.21447 0.98969 1.20996 1.14863 0.92120 1.25893 0.99039 0.98517 0.96018 1.70075 1.27268 1.37871 1.22225 0.85388 0.79172 0.78815 0.77281 1.19832 1.20572 1.18973 1.20864 1.00390 0.99549 0.91262 1.20342 0.99607 0.94942 0.95998 1.20442 0.99469 0.99052 0.92710 1.21666 0.95123 1.02169 1.00611 1.18043 0.99542 0.91056 0.85598 1.84763 1.40240 1.71342 1.34160 0.93321 0.93860 0.90822 0.90534 0.89586 0.85827 0.91163 0.94816 0.91022 0.92634 0.96829 0.97629 1.01793 0.92615 0.86306 0.91491 0.90358 0.91074 0.91933 0.93282 0.74087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.89 71.98 0.71 -2.00 16 2 C -0.07 -1.33 5.79 29.84 0.17 -1.16 16 3 C -0.11 -2.61 5.15 -19.77 -0.10 -2.71 16 4 C -0.11 -3.06 7.60 22.25 0.17 -2.89 16 5 C -0.08 -2.50 4.88 -19.85 -0.10 -2.59 16 6 C 0.09 3.53 5.12 85.56 0.44 3.96 16 7 N -0.54 -24.60 4.74 -931.66 -4.42 -29.02 16 8 C 0.04 1.78 8.95 127.69 1.14 2.92 16 9 C 0.21 11.38 4.72 85.55 0.40 11.79 16 10 C -0.52 -30.47 8.46 25.60 0.22 -30.25 16 11 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 12 C 0.00 0.20 5.46 84.66 0.46 0.66 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 C -0.10 -3.07 9.33 22.26 0.21 -2.86 16 19 C -0.11 -2.76 5.15 -19.77 -0.10 -2.86 16 20 C -0.08 -1.63 5.79 29.85 0.17 -1.45 16 21 C -0.14 -2.18 9.89 71.98 0.71 -1.46 16 22 C 0.10 2.42 6.65 22.51 0.15 2.57 16 23 O -0.49 -9.08 11.78 -92.42 -1.09 -10.17 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.29 8.05 -2.38 -0.02 1.27 16 28 H 0.09 1.28 7.69 -2.39 -0.02 1.26 16 29 H 0.12 3.30 8.02 -2.91 -0.02 3.28 16 30 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 31 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.07 2.58 6.16 -2.39 -0.01 2.57 16 33 H 0.05 2.45 6.76 -2.38 -0.02 2.43 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.01 0.33 7.93 -2.39 -0.02 0.31 16 36 H -0.04 -2.10 8.12 -2.38 -0.02 -2.12 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.07 1.43 8.05 -2.38 -0.02 1.41 16 40 H 0.08 1.56 7.69 -2.39 -0.02 1.54 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.40 3.70 9.06 -74.06 -0.67 3.03 16 Total: -1.00 -67.18 357.45 1.75 -65.42 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.29 Total: 11.66 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 4.66 Total: -28.34 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -4.13 Total: -85.54 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.09 Total: -10.17 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.18 1.75 -65.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144137969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds