Wall clock time and date at job start Mon Mar 30 2020 20:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 120.00087 * 2 1 4 4 C 1.38232 * 119.99601 * 179.97438 * 3 2 1 5 5 C 1.38238 * 120.00321 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99943 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47212 * 340.00707 * 6 5 4 8 8 C 1.53009 * 109.46483 * 100.00485 * 6 5 4 9 9 O 1.42899 * 109.47092 * 55.89889 * 8 6 5 10 10 N 1.46900 * 109.46897 * 220.00102 * 6 5 4 11 11 C 1.46898 * 110.99806 * 86.84765 * 10 6 5 12 12 H 1.09001 * 109.47106 * 321.70075 * 11 10 6 13 13 C 1.53000 * 109.47539 * 81.69957 * 11 10 6 14 14 C 1.53001 * 109.46940 * 201.70454 * 11 10 6 15 15 C 1.53004 * 109.47114 * 64.99749 * 14 11 10 16 16 C 1.50701 * 109.46728 * 179.97438 * 15 14 11 17 17 H 1.07994 * 120.00546 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99519 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99429 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00048 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47071 * 90.00045 * 20 18 16 22 22 H 1.48502 * 109.47012 * 210.00241 * 20 18 16 23 23 H 1.48504 * 109.47230 * 330.00018 * 20 18 16 24 24 C 1.38235 * 119.99886 * 0.27616 * 5 4 3 25 25 C 1.38236 * 119.99523 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46919 * 89.99192 * 1 2 3 27 27 H 1.08997 * 109.47226 * 209.99870 * 1 2 3 28 28 H 1.09003 * 109.46628 * 330.00309 * 1 2 3 29 29 H 1.07999 * 120.00045 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.99823 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.46795 * 175.90054 * 8 6 5 32 32 H 1.09004 * 109.46884 * 295.89945 * 8 6 5 33 33 H 0.96703 * 113.99553 * 179.97438 * 9 8 6 34 34 H 1.00896 * 110.99740 * 210.79358 * 10 6 5 35 35 H 1.09006 * 109.46783 * 55.10824 * 13 11 10 36 36 H 1.08995 * 109.47284 * 175.09940 * 13 11 10 37 37 H 1.08996 * 109.47095 * 295.10766 * 13 11 10 38 38 H 1.09000 * 109.46806 * 184.99289 * 14 11 10 39 39 H 1.08994 * 109.47088 * 304.99492 * 14 11 10 40 40 H 1.08995 * 109.46988 * 299.99958 * 15 14 11 41 41 H 1.09003 * 109.47170 * 59.99908 * 15 14 11 42 42 H 0.97000 * 119.99421 * 180.02562 * 19 18 16 43 43 H 1.07998 * 119.99920 * 179.72484 * 24 5 4 44 44 H 1.07999 * 120.00274 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7788 -0.0002 0.0016 7 1 6.1421 0.9651 -0.3506 8 6 6.2886 -0.2496 1.4225 9 8 5.7351 -1.4695 1.9200 10 7 6.2683 -1.0620 -0.8877 11 6 6.3727 -0.5824 -2.2723 12 1 5.5330 0.0766 -2.4928 13 6 7.6840 0.1859 -2.4486 14 6 6.3486 -1.7764 -3.2287 15 6 4.9884 -2.4716 -3.1425 16 6 4.9645 -3.6473 -4.0850 17 1 5.8327 -3.8760 -4.6851 18 6 3.8345 -4.4315 -4.1803 19 7 3.8138 -5.4578 -5.0025 20 14 2.3329 -4.0363 -3.1418 21 1 1.4475 -3.1051 -3.8861 22 1 1.5941 -5.2893 -2.8429 23 1 2.7636 -3.4003 -1.8708 24 6 3.5805 -1.1973 -0.0036 25 6 2.1981 -1.1972 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.6583 2.1324 -0.0004 30 1 4.1206 2.1323 0.0010 31 1 7.3762 -0.3221 1.4108 32 1 5.9865 0.5759 2.0670 33 1 6.0164 -1.6915 2.8182 34 1 7.1517 -1.4262 -0.5637 35 1 8.5188 -0.4458 -2.1449 36 1 7.8028 0.4666 -3.4950 37 1 7.6646 1.0840 -1.8313 38 1 6.5149 -1.4286 -4.2483 39 1 7.1342 -2.4795 -2.9520 40 1 4.8221 -2.8193 -2.1229 41 1 4.2028 -1.7685 -3.4192 42 1 3.0187 -6.0093 -5.0699 43 1 4.1205 -2.1326 -0.0073 44 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:31 Heat of formation + Delta-G solvation = -64.418696 kcal Electronic energy + Delta-G solvation = -22460.882748 eV Core-core repulsion = 19376.304097 eV Total energy + Delta-G solvation = -3084.578651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61808 -38.73365 -37.32284 -35.36196 -34.32581 -32.71880 -31.69557 -31.06689 -28.54038 -27.23621 -26.96303 -23.53788 -23.22791 -22.79534 -21.34913 -21.01091 -18.84278 -18.38967 -17.23133 -16.58873 -16.31659 -16.11036 -15.95625 -15.68525 -15.20775 -14.84746 -14.64010 -14.52707 -14.16984 -14.06904 -13.99999 -13.55465 -13.48005 -13.15857 -12.99516 -12.91106 -12.85689 -12.69924 -12.20106 -12.01281 -11.81438 -11.64618 -11.54030 -11.46677 -11.32186 -11.08364 -10.78673 -10.72648 -9.66326 -9.26498 -9.09358 -8.28357 -6.29032 0.53218 0.68430 1.31920 1.33737 1.51839 2.37371 2.93521 3.08309 3.26348 3.54911 3.90392 4.04089 4.07944 4.13834 4.24823 4.30308 4.38080 4.44957 4.51082 4.60176 4.65512 4.67976 4.74756 4.80198 4.81001 4.92882 4.98500 5.02363 5.03100 5.08706 5.26968 5.30504 5.37143 5.41458 5.61239 5.63905 5.71368 5.79623 5.84018 5.89783 6.26758 6.33736 6.35925 6.69143 6.79966 7.06325 7.35354 8.88449 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.007888 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.070557 B = 3548.992157 C = 5025.000615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.085 4.085 6 C 0.127 3.873 7 H 0.081 0.919 8 C 0.084 3.916 9 O -0.578 6.578 10 N -0.678 5.678 11 C 0.093 3.907 12 H 0.061 0.939 13 C -0.170 4.170 14 C -0.086 4.086 15 C 0.011 3.989 16 C -0.526 4.526 17 H 0.030 0.970 18 C 0.006 3.994 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.239 1.239 24 C -0.067 4.067 25 C -0.160 4.160 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.389 0.611 34 H 0.347 0.653 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.029 0.971 41 H -0.007 1.007 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 18.334 17.186 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.085 4.085 6 C 0.017 3.983 7 H 0.098 0.902 8 C 0.006 3.994 9 O -0.385 6.385 10 N -0.311 5.311 11 C -0.017 4.017 12 H 0.079 0.921 13 C -0.229 4.229 14 C -0.124 4.124 15 C -0.027 4.027 16 C -0.564 4.564 17 H 0.048 0.952 18 C -0.190 4.190 19 N -0.596 5.596 20 Si 0.765 3.235 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.162 1.162 24 C -0.085 4.085 25 C -0.178 4.178 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.167 0.833 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.042 17.914 16.465 24.354 hybrid contribution 0.280 -0.301 0.242 0.477 sum 1.322 17.613 16.707 24.313 Atomic orbital electron populations 1.20818 0.90012 1.03533 1.02492 1.20186 0.97214 0.93061 0.99777 1.21180 0.94361 0.97650 1.02007 1.21277 0.94533 0.97682 1.00433 1.19876 0.95674 0.92679 1.00310 1.20618 0.90969 0.94331 0.92347 0.90177 1.22323 0.96835 0.87293 0.92953 1.86661 1.73976 1.41603 1.36248 1.60244 1.35108 1.34734 1.00981 1.21509 0.97116 0.94661 0.88365 0.92080 1.22410 0.97259 1.00549 1.02689 1.21342 0.97517 0.96310 0.97200 1.19272 0.94420 0.93177 0.95808 1.21688 0.99543 1.12194 1.22956 0.95168 1.25917 1.02028 0.94618 0.96472 1.70077 1.30382 1.19339 1.39832 0.85791 0.79025 0.77414 0.81241 1.20181 1.21325 1.16177 1.20906 0.93149 0.98761 0.95718 1.21247 0.95130 0.97878 1.03568 0.91429 0.91651 0.89528 0.83880 0.83891 0.91606 0.91765 0.76280 0.83279 0.91939 0.92145 0.91214 0.93648 0.93536 0.95308 0.98877 0.92798 0.87711 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 10.01 71.24 0.71 -1.78 16 2 C -0.10 -2.93 5.88 -19.86 -0.12 -3.05 16 3 C -0.13 -3.32 9.70 22.27 0.22 -3.11 16 4 C -0.12 -2.98 9.67 22.27 0.22 -2.76 16 5 C -0.08 -2.45 4.58 -19.86 -0.09 -2.54 16 6 C 0.13 2.98 2.46 44.17 0.11 3.09 16 7 H 0.08 1.55 6.78 -2.39 -0.02 1.53 16 8 C 0.08 1.51 6.55 71.99 0.47 1.98 16 9 O -0.58 -13.00 12.09 -148.98 -1.80 -14.80 16 10 N -0.68 -19.57 4.67 -473.30 -2.21 -21.78 16 11 C 0.09 2.86 2.41 44.92 0.11 2.97 16 12 H 0.06 2.02 7.74 -2.39 -0.02 2.01 16 13 C -0.17 -3.83 9.15 71.98 0.66 -3.17 16 14 C -0.09 -3.50 4.83 30.60 0.15 -3.35 16 15 C 0.01 0.54 3.93 29.85 0.12 0.66 16 16 C -0.53 -32.49 9.66 25.60 0.25 -32.24 16 17 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 18 C 0.01 0.35 5.47 84.66 0.46 0.81 16 19 N -0.95 -63.39 13.96 21.45 0.30 -63.09 16 20 Si 0.94 48.73 27.47 68.60 1.88 50.61 16 21 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.24 -11.78 6.54 99.48 0.65 -11.13 16 24 C -0.07 -2.39 8.35 22.27 0.19 -2.21 16 25 C -0.16 -5.56 9.70 22.27 0.22 -5.34 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 28 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 29 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.14 2.55 8.04 -2.91 -0.02 2.53 16 31 H 0.07 0.90 8.04 -2.38 -0.02 0.88 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.39 5.06 9.12 -74.06 -0.68 4.39 16 34 H 0.35 9.00 8.01 -89.70 -0.72 8.28 16 35 H 0.06 1.32 8.06 -2.38 -0.02 1.30 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.24 7.29 -2.39 -0.02 1.22 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.50 6.55 -2.39 -0.02 1.48 16 41 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 16 42 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 43 H 0.10 4.34 7.22 -2.91 -0.02 4.32 16 44 H 0.10 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -76.95 355.01 1.36 -75.59 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.47 Total: 23.51 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 3.66 Total: -50.04 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.91 Total: -84.87 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.80 Total: -14.80 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.88 Total: 50.61 kcal Total: -76.95 1.36 -75.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.170 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds