Wall clock time and date at job start Mon Mar 30 2020 20:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00169 * 3 2 1 5 5 H 1.48496 * 109.47430 * 30.00574 * 3 2 1 6 6 H 1.48504 * 109.46831 * 150.00700 * 3 2 1 7 7 C 1.37878 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47597 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 300.00057 * 10 9 7 12 12 C 1.52997 * 109.47127 * 299.99539 * 11 10 9 13 13 N 1.46896 * 109.47114 * 180.02562 * 12 11 10 14 14 C 1.48611 * 111.00122 * 175.00250 * 13 12 11 15 15 H 1.08999 * 112.07117 * 42.30733 * 14 13 12 16 16 C 1.54458 * 104.51750 * 280.16742 * 14 13 12 17 17 C 1.54219 * 105.06130 * 336.01150 * 16 14 13 18 18 C 1.48615 * 111.00222 * 59.63360 * 13 12 11 19 19 H 1.08996 * 112.06575 * 317.69927 * 18 13 12 20 20 C 1.53903 * 107.39383 * 194.32848 * 18 13 12 21 21 C 1.51522 * 107.76802 * 301.84696 * 20 18 13 22 22 O 1.20756 * 121.00476 * 225.55506 * 21 20 18 23 23 C 1.51524 * 117.99064 * 45.53222 * 21 20 18 24 24 C 1.53002 * 109.46817 * 60.00361 * 12 11 10 25 25 C 1.52996 * 109.46972 * 299.99733 * 24 12 11 26 26 H 0.96999 * 119.99877 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 300.00122 * 9 7 2 28 28 H 1.08993 * 109.47839 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47160 * 59.99688 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 31 31 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 33 33 H 1.08998 * 110.32568 * 94.91472 * 16 14 13 34 34 H 1.09006 * 110.32391 * 217.12364 * 16 14 13 35 35 H 1.08995 * 110.32708 * 241.10650 * 17 16 14 36 36 H 1.09006 * 110.31583 * 118.90059 * 17 16 14 37 37 H 1.08999 * 109.80288 * 182.27804 * 20 18 13 38 38 H 1.09002 * 109.84879 * 61.44037 * 20 18 13 39 39 H 1.09006 * 109.79657 * 194.90074 * 23 21 20 40 40 H 1.09002 * 109.85212 * 74.06950 * 23 21 20 41 41 H 1.08996 * 109.47407 * 60.00219 * 24 12 11 42 42 H 1.09000 * 109.46986 * 179.97438 * 24 12 11 43 43 H 1.09001 * 109.46993 * 180.02562 * 25 24 12 44 44 H 1.09000 * 109.47380 * 299.99696 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 3.1247 -3.5811 -1.2499 12 6 2.2450 -3.6621 -2.4990 13 7 3.0896 -3.5849 -3.6985 14 6 2.2830 -3.7806 -4.9312 15 1 1.3350 -3.2443 -4.8899 16 6 2.0936 -5.3102 -5.0313 17 6 3.2725 -5.9126 -4.2402 18 6 4.0755 -4.6966 -3.7282 19 1 4.5228 -4.8734 -2.7501 20 6 5.1328 -4.3455 -4.7900 21 6 4.4163 -4.1591 -6.1120 22 8 4.8434 -4.6559 -7.1265 23 6 3.1474 -3.3310 -6.1226 24 6 1.2509 -2.4991 -2.4990 25 6 0.3713 -2.5802 -1.2497 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 0.8897 28 1 1.7001 -4.6061 -0.0010 29 1 2.8718 -3.6045 0.8894 30 1 3.6697 -2.6371 -1.2498 31 1 3.8332 -4.4094 -1.2497 32 1 1.7000 -4.6061 -2.4990 33 1 1.1456 -5.6046 -4.5810 34 1 2.1342 -5.6295 -6.0727 35 1 3.8918 -6.5275 -4.8932 36 1 2.9031 -6.5028 -3.4014 37 1 5.8561 -5.1567 -4.8732 38 1 5.6431 -3.4229 -4.5133 39 1 2.6064 -3.4963 -7.0545 40 1 3.3942 -2.2742 -6.0217 41 1 1.7959 -1.5552 -2.4990 42 1 0.6244 -2.5566 -3.3891 43 1 -0.3373 -1.7519 -1.2499 44 1 -0.1738 -3.5241 -1.2497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:48 Heat of formation + Delta-G solvation = -60.337223 kcal Electronic energy + Delta-G solvation = -23301.581598 eV Core-core repulsion = 20217.179933 eV Total energy + Delta-G solvation = -3084.401665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14552 -39.81560 -38.38965 -34.59955 -32.90619 -32.59315 -31.32172 -31.08845 -28.99315 -26.55972 -25.70025 -23.45494 -23.26707 -21.67284 -21.04944 -20.34630 -19.34862 -17.91441 -17.70761 -16.83475 -16.55164 -16.22264 -15.83979 -15.26574 -15.06010 -15.03579 -14.68336 -14.63813 -14.50195 -13.84907 -13.76654 -13.31829 -13.12847 -12.95840 -12.79482 -12.57987 -12.46932 -12.36425 -12.23751 -12.05133 -11.94368 -11.76398 -11.62470 -11.41931 -11.36867 -10.89684 -10.63887 -10.48827 -10.27624 -10.21025 -9.37386 -7.97639 -6.06274 0.96805 1.43723 1.46371 1.53703 2.50359 2.89636 3.14452 3.31383 3.63831 3.73898 3.91096 3.94957 4.10659 4.15054 4.20817 4.32952 4.41019 4.51176 4.54783 4.55121 4.74912 4.78461 4.86125 4.90768 4.94327 4.96596 5.02068 5.03885 5.05236 5.06836 5.13585 5.15361 5.24326 5.30390 5.48089 5.64354 5.71808 5.77112 5.81743 6.00752 6.05287 6.23808 6.31633 6.51964 6.53152 7.03556 7.59344 9.07178 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.005454 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.862975 B = 5133.033959 C = 5481.558070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.497 4.497 8 H 0.053 0.947 9 C 0.037 3.963 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.100 3.900 13 N -0.508 5.508 14 C 0.066 3.934 15 H 0.103 0.897 16 C -0.153 4.153 17 C -0.152 4.152 18 C 0.066 3.934 19 H 0.115 0.885 20 C -0.153 4.153 21 C 0.376 3.624 22 O -0.501 6.501 23 C -0.155 4.155 24 C -0.080 4.080 25 C -0.102 4.102 26 H 0.255 0.745 27 H -0.015 1.015 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -10.323 -9.387 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.008 4.008 13 N -0.231 5.231 14 C -0.042 4.042 15 H 0.121 0.879 16 C -0.192 4.192 17 C -0.191 4.191 18 C -0.043 4.043 19 H 0.133 0.867 20 C -0.191 4.191 21 C 0.255 3.745 22 O -0.378 6.378 23 C -0.193 4.193 24 C -0.118 4.118 25 C -0.141 4.141 26 H 0.064 0.936 27 H 0.003 0.997 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.763 -9.915 -9.883 15.547 hybrid contribution -0.503 0.536 0.344 0.812 sum 6.260 -9.378 -9.539 14.770 Atomic orbital electron populations 1.70009 1.07007 1.26444 1.52677 1.25565 0.95364 1.01626 0.95736 0.85869 0.78916 0.80773 0.77970 1.20486 1.21738 1.19488 1.21381 0.92674 0.91352 1.48150 0.92870 1.18699 0.93203 0.93213 0.93010 1.21452 0.97744 0.97425 0.97289 1.21427 0.97186 1.01419 0.92929 1.21453 0.93181 0.96743 0.89453 1.65168 1.13962 1.42489 1.01436 1.22998 0.96794 0.94987 0.89469 0.87939 1.22940 0.99406 0.95728 1.01134 1.22946 0.97119 0.98634 1.00415 1.23089 0.93178 0.88844 0.99152 0.86687 1.22539 0.98504 1.05253 0.92800 1.25193 0.85305 0.74729 0.89256 1.90376 1.66461 1.43004 1.37980 1.22535 0.95210 1.02058 0.99475 1.21237 0.96226 0.98158 0.96145 1.21356 0.98396 0.98363 0.95941 0.93565 0.99663 0.93353 0.93548 0.92483 0.91356 0.94198 0.90906 0.90825 0.90671 0.90524 0.88085 0.86865 0.88487 0.87139 0.93336 0.93709 0.92577 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.50 -25.82 6.61 25.60 0.17 -25.65 16 8 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 9 C 0.04 1.77 2.59 -11.54 -0.03 1.74 16 10 C -0.10 -3.83 5.41 30.60 0.17 -3.66 16 11 C -0.09 -3.02 4.83 30.60 0.15 -2.88 16 12 C 0.10 3.09 1.68 44.92 0.08 3.16 16 13 N -0.51 -13.24 4.73 -803.25 -3.80 -17.04 16 14 C 0.07 1.54 3.44 45.38 0.16 1.69 16 15 H 0.10 2.51 6.10 -2.39 -0.01 2.50 16 16 C -0.15 -3.16 5.45 31.50 0.17 -2.98 16 17 C -0.15 -2.98 5.51 31.50 0.17 -2.80 16 18 C 0.07 1.39 3.41 45.38 0.15 1.55 16 19 H 0.12 2.32 5.83 -2.39 -0.01 2.30 16 20 C -0.15 -3.03 5.76 30.41 0.18 -2.85 16 21 C 0.38 8.77 5.49 29.63 0.16 8.93 16 22 O -0.50 -14.62 17.90 -1.44 -0.03 -14.65 16 23 C -0.15 -3.31 5.76 30.42 0.18 -3.14 16 24 C -0.08 -3.07 4.95 30.59 0.15 -2.91 16 25 C -0.10 -4.58 5.23 30.59 0.16 -4.42 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 31 H 0.07 1.82 6.10 -2.39 -0.01 1.81 16 32 H 0.04 1.20 7.17 -2.39 -0.02 1.18 16 33 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.07 1.46 7.71 -2.38 -0.02 1.44 16 35 H 0.07 1.40 7.71 -2.39 -0.02 1.38 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 2.17 7.22 -2.39 -0.02 2.15 16 42 H 0.04 1.56 6.29 -2.39 -0.02 1.55 16 43 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -59.69 319.48 1.88 -57.82 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.98 Total: 13.76 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 2.46 Total: -32.99 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -3.56 Total: -69.09 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.03 Total: -14.65 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -59.69 1.88 -57.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.520 kcal (2) G-P(sol) polarization free energy of solvation -59.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds