Wall clock time and date at job start Mon Mar 30 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48503 * 109.47480 * 240.00441 * 3 2 1 5 5 H 1.48506 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47494 * 119.99862 * 3 2 1 7 7 C 1.37875 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47298 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47218 * 300.00025 * 11 10 9 13 13 N 1.46896 * 109.47412 * 180.02562 * 12 11 10 14 14 C 1.46871 * 111.00228 * 179.97438 * 13 12 11 15 15 C 1.53895 * 109.02375 * 178.71027 * 14 13 12 16 16 H 1.08999 * 113.15838 * 188.76523 * 15 14 13 17 17 C 1.54252 * 107.27669 * 313.56439 * 15 14 13 18 18 C 1.54111 * 105.62991 * 86.63077 * 17 15 14 19 19 C 1.54701 * 105.58221 * 359.81124 * 18 17 15 20 20 H 1.08997 * 112.68534 * 148.43167 * 19 18 17 21 21 C 1.47618 * 111.14757 * 54.38398 * 13 12 11 22 22 C 1.52870 * 103.65027 * 26.27613 * 19 18 17 23 23 O 1.20763 * 129.11066 * 137.46082 * 22 19 18 24 24 C 1.52992 * 109.47303 * 59.99739 * 12 11 10 25 25 C 1.53000 * 109.47372 * 300.00574 * 24 12 11 26 26 H 0.97003 * 119.99989 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47220 * 60.00410 * 9 7 2 28 28 H 1.09005 * 109.47346 * 60.00146 * 10 9 7 29 29 H 1.09006 * 109.47105 * 300.00003 * 10 9 7 30 30 H 1.09005 * 109.47098 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.47302 * 59.99756 * 11 10 9 32 32 H 1.09005 * 109.46942 * 299.99703 * 12 11 10 33 33 H 1.08998 * 109.54074 * 58.85499 * 14 13 12 34 34 H 1.08991 * 109.62008 * 298.61902 * 14 13 12 35 35 H 1.09002 * 110.36284 * 327.50838 * 17 15 14 36 36 H 1.08999 * 110.11356 * 205.62627 * 17 15 14 37 37 H 1.08997 * 110.22689 * 240.78165 * 18 17 15 38 38 H 1.09001 * 110.29545 * 118.87054 * 18 17 15 39 39 H 1.08994 * 109.45858 * 61.40274 * 21 13 12 40 40 H 1.09003 * 109.74107 * 301.06127 * 21 13 12 41 41 H 1.09005 * 109.47151 * 60.00091 * 24 12 11 42 42 H 1.08993 * 109.47541 * 180.02562 * 24 12 11 43 43 H 1.09005 * 109.46588 * 299.99862 * 25 24 12 44 44 H 1.08999 * 109.47131 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 0.6003 -5.0685 1.2477 13 7 -0.1337 -6.3409 1.2475 14 6 -0.9905 -6.4546 2.4349 15 6 -1.7605 -7.7856 2.3724 16 1 -2.5287 -7.8729 3.1406 17 6 -2.3313 -7.9180 0.9455 18 6 -1.2134 -8.5717 0.1100 19 6 -0.0352 -8.7875 1.0890 20 1 0.5602 -9.6667 0.8428 21 6 0.7871 -7.4868 1.1131 22 6 -0.7154 -8.8984 2.4534 23 8 -0.4900 -9.6675 3.3568 24 6 -0.3939 -3.9056 1.2478 25 6 0.3710 -2.5806 1.2484 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8906 30 1 2.1888 -5.8155 -0.0016 31 1 0.8540 -5.0445 -0.8913 32 1 1.2267 -5.0110 2.1380 33 1 -1.6973 -5.6251 2.4552 34 1 -0.3749 -6.4313 3.3340 35 1 -2.5772 -6.9354 0.5427 36 1 -3.2166 -8.5538 0.9535 37 1 -0.9127 -7.9089 -0.7013 38 1 -1.5506 -9.5278 -0.2904 39 1 1.4720 -7.5037 1.9608 40 1 1.3539 -7.3970 0.1863 41 1 -1.0203 -3.9631 0.3576 42 1 -1.0205 -3.9634 2.1377 43 1 0.9974 -2.5231 2.1386 44 1 -0.3373 -1.7521 1.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:53 Heat of formation + Delta-G solvation = -47.016386 kcal Electronic energy + Delta-G solvation = -22714.119019 eV Core-core repulsion = 19630.294988 eV Total energy + Delta-G solvation = -3083.824031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03743 -38.43382 -37.00459 -34.22488 -32.17732 -31.82231 -29.76057 -29.03031 -27.15089 -24.74922 -24.54009 -22.78002 -21.52129 -20.27879 -20.25362 -18.86172 -18.60262 -16.94590 -16.30893 -15.83143 -15.05299 -14.74967 -14.60858 -14.43887 -14.17135 -13.81946 -13.30270 -13.18018 -12.84616 -12.71813 -12.38691 -12.36761 -12.26247 -11.54790 -11.46348 -11.32158 -11.17068 -10.93866 -10.83222 -10.63639 -10.54144 -10.45061 -10.35391 -10.17994 -9.79352 -9.36171 -9.28793 -8.86230 -8.64700 -8.28619 -8.17344 -5.96635 -4.02620 1.76165 3.32142 3.37049 3.39676 3.83480 3.90289 4.29251 4.45052 4.64307 4.72147 4.77482 4.98889 5.23675 5.27253 5.31630 5.35782 5.36664 5.46726 5.60758 5.66190 5.67841 5.78373 5.84016 5.86808 5.91450 6.08075 6.12623 6.27680 6.32006 6.36752 6.41553 6.49524 6.67135 6.75853 6.93061 7.10749 7.17755 7.21558 7.30140 7.38877 7.53631 7.76556 8.04062 8.17053 8.49118 9.01353 9.61957 11.08802 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.003957 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.706861 B = 7074.486516 C = 7254.673057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.108 4.108 11 C -0.108 4.108 12 C 0.093 3.907 13 N -0.535 5.535 14 C 0.067 3.933 15 C -0.150 4.150 16 H 0.103 0.897 17 C -0.099 4.099 18 C -0.099 4.099 19 C -0.150 4.150 20 H 0.103 0.897 21 C 0.066 3.934 22 C 0.368 3.632 23 O -0.442 6.442 24 C -0.107 4.107 25 C -0.109 4.109 26 H 0.259 0.741 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -15.331 1.433 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.146 4.146 12 C -0.014 4.014 13 N -0.260 5.260 14 C -0.061 4.061 15 C -0.169 4.169 16 H 0.121 0.879 17 C -0.137 4.137 18 C -0.136 4.136 19 C -0.170 4.170 20 H 0.121 0.879 21 C -0.062 4.062 22 C 0.243 3.757 23 O -0.314 6.314 24 C -0.145 4.145 25 C -0.147 4.147 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.922 -15.605 1.512 16.161 hybrid contribution 1.044 0.961 0.804 1.630 sum -2.878 -14.644 2.315 15.103 Atomic orbital electron populations 1.69860 1.05805 1.26364 1.50909 1.24949 0.94824 0.98909 0.95224 0.86731 0.79665 0.83458 0.78544 1.20357 1.21351 1.20413 1.21208 0.92819 0.90871 1.50320 0.92958 1.18637 0.92560 0.91367 0.94289 1.21625 0.98642 0.94286 1.00053 1.21666 0.97543 0.98141 0.97243 1.21712 0.94544 0.87471 0.97640 1.61967 1.23016 1.02203 1.38809 1.22184 0.96543 0.95947 0.91407 1.23048 0.98173 0.95322 1.00394 0.87888 1.21949 0.96992 1.02467 0.92288 1.22022 0.93438 1.00411 0.97752 1.23129 0.98956 0.99286 0.95619 0.87910 1.22331 0.93440 0.88244 1.02192 1.25802 0.82276 0.80603 0.87065 1.90388 1.63617 1.37348 1.40013 1.21711 0.97225 0.95008 1.00538 1.21619 0.99616 0.94768 0.98701 0.93058 0.95583 0.93676 0.93295 0.93680 0.91613 0.94774 0.88490 0.94964 0.89260 0.92173 0.89382 0.92155 0.94895 0.88577 0.91881 0.94002 0.95110 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.82 8.56 -34.44 -0.29 -14.11 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.14 5.14 -26.73 -0.14 -2.28 16 11 C -0.11 -1.76 4.80 -26.73 -0.13 -1.89 16 12 C 0.09 1.47 1.98 -67.72 -0.13 1.34 16 13 N -0.53 -6.97 3.38 -224.92 -0.76 -7.73 16 14 C 0.07 0.82 4.54 -3.37 -0.02 0.81 16 15 C -0.15 -1.61 4.12 -89.56 -0.37 -1.98 16 16 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.10 -0.95 5.94 -25.50 -0.15 -1.11 16 18 C -0.10 -0.93 5.96 -25.26 -0.15 -1.08 16 19 C -0.15 -1.58 4.14 -89.32 -0.37 -1.95 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C 0.07 0.77 4.44 -2.96 -0.01 0.76 16 22 C 0.37 4.57 7.00 -26.86 -0.19 4.38 16 23 O -0.44 -6.81 17.99 6.00 0.11 -6.71 16 24 C -0.11 -1.92 4.97 -26.73 -0.13 -2.05 16 25 C -0.11 -2.43 4.98 -26.73 -0.13 -2.56 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.64 6.32 -51.93 -0.33 0.31 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.18 6.25 -51.93 -0.32 0.86 16 34 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 35 H 0.09 0.93 7.78 -51.93 -0.40 0.52 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.88 7.80 -51.93 -0.40 0.48 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.41 8.13 -51.93 -0.42 -0.01 16 40 H 0.10 1.07 6.20 -51.93 -0.32 0.75 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.04 0.69 6.38 -51.93 -0.33 0.36 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -28.12 326.21 -10.10 -38.22 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.47 Total: -1.30 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -2.51 Total: -19.14 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.13 Total: -31.99 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.11 Total: -6.71 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.12 -10.10 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.793 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds