Wall clock time and date at job start Mon Mar 30 2020 20:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48503 * 109.47480 * 240.00441 * 3 2 1 5 5 H 1.48506 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47494 * 119.99862 * 3 2 1 7 7 C 1.37875 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47224 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47298 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47218 * 300.00025 * 11 10 9 13 13 N 1.46896 * 109.47412 * 180.02562 * 12 11 10 14 14 C 1.46871 * 111.00228 * 179.97438 * 13 12 11 15 15 C 1.53895 * 109.02375 * 178.71027 * 14 13 12 16 16 H 1.08999 * 113.15838 * 188.76523 * 15 14 13 17 17 C 1.54252 * 107.27669 * 313.56439 * 15 14 13 18 18 C 1.54111 * 105.62991 * 86.63077 * 17 15 14 19 19 C 1.54701 * 105.58221 * 359.81124 * 18 17 15 20 20 H 1.08997 * 112.68534 * 148.43167 * 19 18 17 21 21 C 1.47618 * 111.14757 * 54.38398 * 13 12 11 22 22 C 1.52870 * 103.65027 * 26.27613 * 19 18 17 23 23 O 1.20763 * 129.11066 * 137.46082 * 22 19 18 24 24 C 1.52992 * 109.47303 * 59.99739 * 12 11 10 25 25 C 1.53000 * 109.47372 * 300.00574 * 24 12 11 26 26 H 0.97003 * 119.99989 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47220 * 60.00410 * 9 7 2 28 28 H 1.09005 * 109.47346 * 60.00146 * 10 9 7 29 29 H 1.09006 * 109.47105 * 300.00003 * 10 9 7 30 30 H 1.09005 * 109.47098 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.47302 * 59.99756 * 11 10 9 32 32 H 1.09005 * 109.46942 * 299.99703 * 12 11 10 33 33 H 1.08998 * 109.54074 * 58.85499 * 14 13 12 34 34 H 1.08991 * 109.62008 * 298.61902 * 14 13 12 35 35 H 1.09002 * 110.36284 * 327.50838 * 17 15 14 36 36 H 1.08999 * 110.11356 * 205.62627 * 17 15 14 37 37 H 1.08997 * 110.22689 * 240.78165 * 18 17 15 38 38 H 1.09001 * 110.29545 * 118.87054 * 18 17 15 39 39 H 1.08994 * 109.45858 * 61.40274 * 21 13 12 40 40 H 1.09003 * 109.74107 * 301.06127 * 21 13 12 41 41 H 1.09005 * 109.47151 * 60.00091 * 24 12 11 42 42 H 1.08993 * 109.47541 * 180.02562 * 24 12 11 43 43 H 1.09005 * 109.46588 * 299.99862 * 25 24 12 44 44 H 1.08999 * 109.47131 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 0.6003 -5.0685 1.2477 13 7 -0.1337 -6.3409 1.2475 14 6 -0.9905 -6.4546 2.4349 15 6 -1.7605 -7.7856 2.3724 16 1 -2.5287 -7.8729 3.1406 17 6 -2.3313 -7.9180 0.9455 18 6 -1.2134 -8.5717 0.1100 19 6 -0.0352 -8.7875 1.0890 20 1 0.5602 -9.6667 0.8428 21 6 0.7871 -7.4868 1.1131 22 6 -0.7154 -8.8984 2.4534 23 8 -0.4900 -9.6675 3.3568 24 6 -0.3939 -3.9056 1.2478 25 6 0.3710 -2.5806 1.2484 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8906 30 1 2.1888 -5.8155 -0.0016 31 1 0.8540 -5.0445 -0.8913 32 1 1.2267 -5.0110 2.1380 33 1 -1.6973 -5.6251 2.4552 34 1 -0.3749 -6.4313 3.3340 35 1 -2.5772 -6.9354 0.5427 36 1 -3.2166 -8.5538 0.9535 37 1 -0.9127 -7.9089 -0.7013 38 1 -1.5506 -9.5278 -0.2904 39 1 1.4720 -7.5037 1.9608 40 1 1.3539 -7.3970 0.1863 41 1 -1.0203 -3.9631 0.3576 42 1 -1.0205 -3.9634 2.1377 43 1 0.9974 -2.5231 2.1386 44 1 -0.3373 -1.7521 1.2489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:52 Heat of formation + Delta-G solvation = -61.462064 kcal Electronic energy + Delta-G solvation = -22714.745430 eV Core-core repulsion = 19630.294988 eV Total energy + Delta-G solvation = -3084.450442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00739 -39.73139 -38.26127 -35.65462 -33.90713 -32.79610 -31.24595 -30.51118 -28.28357 -26.27769 -25.72134 -24.01039 -22.94057 -21.74056 -21.18254 -20.38898 -19.61975 -18.38318 -17.89426 -16.89961 -16.52999 -16.06772 -15.69869 -15.63292 -15.27799 -15.16617 -14.72767 -14.59733 -14.14939 -13.92879 -13.80710 -13.44228 -13.37411 -13.09430 -12.89982 -12.74777 -12.50950 -12.34840 -12.27610 -12.07809 -11.84028 -11.74373 -11.69501 -11.58322 -11.21818 -11.13858 -10.69347 -10.47161 -10.31780 -10.16609 -9.27483 -8.04179 -6.17561 0.79602 1.42787 1.43052 1.50641 2.45534 2.75534 3.00691 3.22234 3.41774 3.76102 3.84498 3.89024 4.00457 4.03340 4.15523 4.40951 4.44156 4.51781 4.53309 4.64981 4.67393 4.74821 4.77140 4.77522 4.79672 4.89351 4.90013 4.95101 5.04042 5.10739 5.21452 5.22842 5.34857 5.37350 5.46251 5.53641 5.57678 5.65255 5.74273 6.05634 6.09854 6.10783 6.27460 6.41258 6.46425 6.95302 7.50147 8.99131 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.003957 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.706861 B = 7074.486516 C = 7254.673057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.046 3.954 10 C -0.102 4.102 11 C -0.099 4.099 12 C 0.103 3.897 13 N -0.529 5.529 14 C 0.066 3.934 15 C -0.145 4.145 16 H 0.114 0.886 17 C -0.097 4.097 18 C -0.096 4.096 19 C -0.143 4.143 20 H 0.119 0.881 21 C 0.064 3.936 22 C 0.366 3.634 23 O -0.476 6.476 24 C -0.095 4.095 25 C -0.101 4.101 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 -16.779 1.078 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.136 4.136 12 C -0.004 4.004 13 N -0.254 5.254 14 C -0.062 4.062 15 C -0.164 4.164 16 H 0.132 0.868 17 C -0.135 4.135 18 C -0.133 4.133 19 C -0.162 4.162 20 H 0.137 0.863 21 C -0.063 4.063 22 C 0.242 3.758 23 O -0.350 6.350 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.839 -17.059 1.147 17.523 hybrid contribution 1.013 1.431 0.917 1.979 sum -2.826 -15.627 2.064 16.014 Atomic orbital electron populations 1.70000 1.06974 1.26945 1.51472 1.25674 0.95632 1.02056 0.95027 0.85790 0.78538 0.79694 0.78683 1.19777 1.21001 1.19949 1.21630 0.92938 0.92631 1.50303 0.93396 1.18614 0.93048 0.92064 0.93477 1.21491 0.97918 0.94729 0.99854 1.21557 0.97815 0.96879 0.97371 1.21438 0.93779 0.88106 0.97102 1.61911 1.22853 1.01428 1.39190 1.22215 0.96395 0.96962 0.90636 1.23064 0.97945 0.93672 1.01763 0.86791 1.21959 0.97745 1.02591 0.91180 1.22039 0.92719 1.01334 0.97217 1.23149 0.99312 0.99092 0.94693 0.86291 1.22416 0.93343 0.88137 1.02440 1.26194 0.82315 0.80058 0.87197 1.90378 1.64634 1.38778 1.41258 1.21512 0.97247 0.93602 1.00938 1.21399 0.98787 0.96252 0.97513 0.93172 0.98566 0.93981 0.93345 0.90753 0.91645 0.95565 0.88454 0.95881 0.89915 0.90458 0.89605 0.90300 0.95599 0.87421 0.92515 0.92520 0.96119 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 11.32 21.45 0.24 -52.10 16 2 C 0.01 0.81 5.30 84.65 0.45 1.26 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -29.44 8.56 25.60 0.22 -29.22 16 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.05 2.26 2.10 -11.54 -0.02 2.23 16 10 C -0.10 -4.00 5.14 30.59 0.16 -3.84 16 11 C -0.10 -3.03 4.80 30.59 0.15 -2.89 16 12 C 0.10 3.12 1.98 44.91 0.09 3.21 16 13 N -0.53 -12.70 3.38 -865.51 -2.93 -15.63 16 14 C 0.07 1.50 4.54 86.61 0.39 1.90 16 15 C -0.14 -2.81 4.12 -10.11 -0.04 -2.85 16 16 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.10 -1.59 5.94 31.39 0.19 -1.40 16 18 C -0.10 -1.48 5.96 31.55 0.19 -1.30 16 19 C -0.14 -2.59 4.14 -9.95 -0.04 -2.63 16 20 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 21 C 0.06 1.34 4.44 86.47 0.38 1.72 16 22 C 0.37 8.33 7.00 30.51 0.21 8.55 16 23 O -0.48 -14.10 17.99 -1.46 -0.03 -14.12 16 24 C -0.10 -3.38 4.97 30.59 0.15 -3.23 16 25 C -0.10 -4.63 4.98 30.59 0.15 -4.47 16 26 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.89 6.32 -2.38 -0.02 1.87 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.10 2.22 6.25 -2.39 -0.01 2.20 16 34 H 0.02 0.57 8.13 -2.39 -0.02 0.55 16 35 H 0.08 1.51 7.78 -2.39 -0.02 1.49 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 40 H 0.11 2.03 6.20 -2.39 -0.01 2.01 16 41 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.06 1.83 6.38 -2.39 -0.02 1.82 16 43 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 Total: -1.00 -61.54 326.21 2.90 -58.64 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.96 Total: 10.67 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 2.62 Total: -32.97 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -2.69 Total: -67.73 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.03 Total: -14.12 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.54 2.90 -58.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.824 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds