Wall clock time and date at job start Mon Mar 30 2020 20:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34512 * 125.78684 * 2 1 4 4 C 1.41391 * 106.84080 * 179.78917 * 3 2 1 5 5 C 1.34509 * 106.83586 * 0.37522 * 4 3 2 6 6 C 1.50704 * 125.78812 * 179.89140 * 5 4 3 7 7 C 1.53001 * 109.47402 * 89.71037 * 6 5 4 8 8 C 1.52998 * 109.47288 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47024 * 180.02562 * 8 7 6 10 10 C 1.46854 * 111.00034 * 66.04665 * 9 8 7 11 11 C 1.53029 * 109.52283 * 174.15832 * 10 9 8 12 12 C 1.53126 * 109.27795 * 59.18140 * 11 10 9 13 13 C 1.53124 * 109.15878 * 302.34185 * 12 11 10 14 14 H 1.09004 * 109.50324 * 297.71684 * 13 12 11 15 15 C 1.50692 * 109.50139 * 177.59632 * 13 12 11 16 16 H 1.07998 * 120.00386 * 240.00243 * 15 13 12 17 17 C 1.37883 * 120.00294 * 60.00402 * 15 13 12 18 18 N 1.31515 * 119.99399 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00099 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47661 * 89.99899 * 19 17 15 21 21 H 1.48504 * 109.46791 * 210.00010 * 19 17 15 22 22 H 1.48501 * 109.47301 * 329.99325 * 19 17 15 23 23 C 1.46843 * 111.00022 * 301.83787 * 9 8 7 24 24 O 1.34298 * 125.79026 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47414 * 300.00685 * 1 2 3 27 27 H 1.09007 * 109.46838 * 60.00365 * 1 2 3 28 28 H 1.08001 * 126.58426 * 359.97438 * 3 2 1 29 29 H 1.07996 * 126.58236 * 180.23665 * 4 3 2 30 30 H 1.08994 * 109.47111 * 329.71215 * 6 5 4 31 31 H 1.08998 * 109.46947 * 209.71297 * 6 5 4 32 32 H 1.09003 * 109.46972 * 59.99907 * 7 6 5 33 33 H 1.08998 * 109.46862 * 300.00389 * 7 6 5 34 34 H 1.08994 * 109.47298 * 60.00133 * 8 7 6 35 35 H 1.08998 * 109.46874 * 300.00146 * 8 7 6 36 36 H 1.08999 * 109.45788 * 54.14266 * 10 9 8 37 37 H 1.09003 * 109.45264 * 294.17148 * 10 9 8 38 38 H 1.08994 * 109.50822 * 299.23828 * 11 10 9 39 39 H 1.08998 * 109.53380 * 179.13826 * 11 10 9 40 40 H 1.08998 * 109.52297 * 62.25132 * 12 11 10 41 41 H 1.08999 * 109.51925 * 182.44336 * 12 11 10 42 42 H 0.96998 * 119.99547 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.45906 * 305.85080 * 23 9 8 44 44 H 1.08994 * 109.46526 * 65.83386 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0050 5 6 3.5814 -0.7121 -0.0007 6 6 4.7706 -1.6378 -0.0007 7 6 5.1730 -1.9513 1.4418 8 6 6.3807 -2.8905 1.4418 9 7 6.7665 -3.1920 2.8268 10 6 5.7213 -3.9669 3.5076 11 6 6.2163 -4.3862 4.8936 12 6 6.5618 -3.1355 5.7067 13 6 7.6171 -2.3216 4.9527 14 1 8.5273 -2.9125 4.8497 15 6 7.9198 -1.0590 5.7176 16 1 7.7506 -0.0960 5.2590 17 6 8.4130 -1.1332 7.0031 18 7 8.6186 -2.3059 7.5618 19 14 8.7875 0.4319 7.9516 20 1 7.5798 0.8554 8.7048 21 1 9.9006 0.1803 8.9018 22 1 9.1801 1.5041 7.0021 23 6 7.0814 -1.9622 3.5649 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.9665 2.1205 -0.0004 29 1 4.5212 1.2434 0.0099 30 1 5.6040 -1.1586 -0.5143 31 1 4.5107 -2.5631 -0.5147 32 1 4.3395 -2.4305 1.9555 33 1 5.4328 -1.0258 1.9558 34 1 7.2139 -2.4110 0.9283 35 1 6.1212 -3.8159 0.9277 36 1 5.4880 -4.8556 2.9210 37 1 4.8253 -3.3549 3.6116 38 1 7.1043 -5.0095 4.7897 39 1 5.4349 -4.9483 5.4050 40 1 5.6652 -2.5311 5.8440 41 1 6.9558 -3.4307 6.6791 42 1 8.9651 -2.3581 8.4662 43 1 7.8361 -1.3949 3.0201 44 1 6.1790 -1.3598 3.6689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207948163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:19 Heat of formation + Delta-G solvation = -23.958693 kcal Electronic energy + Delta-G solvation = -21578.788040 eV Core-core repulsion = 18495.963866 eV Total energy + Delta-G solvation = -3082.824174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.54119 -40.09459 -36.57408 -34.91140 -34.10589 -33.39961 -31.70785 -31.62345 -28.28389 -26.93398 -25.81587 -24.03452 -23.18415 -22.70138 -22.21785 -21.06296 -19.95800 -18.46289 -17.54191 -17.16614 -16.76800 -16.28453 -16.05565 -15.56318 -15.30584 -15.13323 -14.74232 -14.32460 -14.25386 -13.92605 -13.83645 -13.76449 -13.67489 -13.23526 -12.97096 -12.87140 -12.86271 -12.70184 -12.58882 -12.47611 -12.31706 -11.90218 -11.71986 -11.38924 -11.37302 -10.86353 -10.82434 -10.65758 -10.37706 -9.27971 -8.97927 -8.08073 -6.22244 0.74119 1.40420 1.40806 1.51281 1.64463 1.99713 2.42522 3.18375 3.19176 3.66149 3.91367 4.02589 4.10824 4.14680 4.23839 4.31817 4.34726 4.41595 4.48837 4.58722 4.65493 4.66677 4.69955 4.75927 4.84692 4.88148 4.91959 4.93196 4.96688 5.05290 5.09804 5.17835 5.20964 5.28692 5.36673 5.41081 5.53153 5.63230 5.63560 5.97450 6.13254 6.21787 6.22692 6.41084 6.47001 6.90713 7.45533 8.96569 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003842 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.890153 B = 7286.152829 C = 8053.993706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.033 4.033 3 C -0.228 4.228 4 C -0.225 4.225 5 C -0.025 4.025 6 C -0.026 4.026 7 C -0.145 4.145 8 C 0.058 3.942 9 N -0.547 5.547 10 C 0.065 3.935 11 C -0.112 4.112 12 C -0.104 4.104 13 C 0.051 3.949 14 H -0.004 1.004 15 C -0.537 4.537 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.083 3.917 24 O -0.194 6.194 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.055 0.945 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 1.707 -16.791 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.247 4.247 4 C -0.244 4.244 5 C -0.075 4.075 6 C -0.064 4.064 7 C -0.184 4.184 8 C -0.069 4.069 9 N -0.270 5.270 10 C -0.062 4.062 11 C -0.150 4.150 12 C -0.142 4.142 13 C 0.032 3.968 14 H 0.015 0.985 15 C -0.575 4.575 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.045 4.045 24 O -0.092 6.092 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.212 1.029 -16.638 21.271 hybrid contribution -0.193 1.603 1.094 1.950 sum -13.405 2.633 -15.544 20.694 Atomic orbital electron populations 1.20463 0.82588 1.04720 1.04972 1.23199 0.95626 0.83832 1.05606 1.21880 0.92657 1.00450 1.09706 1.21885 0.99063 0.94338 1.09138 1.22869 0.83342 0.95307 1.05945 1.20123 0.90859 0.98159 0.97264 1.22180 0.99343 1.00490 0.96388 1.22304 0.95883 0.99292 0.89451 1.62173 1.41425 1.20648 1.02753 1.22028 0.91862 0.97394 0.94963 1.21602 1.00310 0.97729 0.95385 1.21462 0.97028 0.95347 1.00400 1.18601 0.93385 0.94118 0.90657 0.98542 1.21533 1.43123 0.93223 0.99652 0.93193 1.25725 0.95315 0.98929 0.98547 1.70037 1.45904 1.24778 1.14757 0.85630 0.77820 0.80147 0.78511 1.20251 1.20756 1.19243 1.21945 0.97563 0.89948 0.95041 1.83950 1.17013 1.36160 1.72033 0.90232 0.88551 0.87793 0.81850 0.82765 0.87052 0.88644 0.92943 0.93096 0.89920 0.88838 0.89246 0.95807 0.92965 0.91447 0.96337 0.92421 0.93070 0.92605 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 71.24 0.74 -0.20 16 2 C -0.03 -0.74 7.32 24.83 0.18 -0.56 16 3 C -0.23 -5.20 10.81 22.19 0.24 -4.96 16 4 C -0.23 -5.60 10.81 22.19 0.24 -5.36 16 5 C -0.03 -0.63 6.58 24.83 0.16 -0.47 16 6 C -0.03 -0.55 5.75 29.85 0.17 -0.38 16 7 C -0.14 -3.77 4.50 30.59 0.14 -3.64 16 8 C 0.06 1.54 5.36 86.30 0.46 2.00 16 9 N -0.55 -19.52 4.86 -896.38 -4.35 -23.88 16 10 C 0.07 2.21 5.05 86.32 0.44 2.65 16 11 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 12 C -0.10 -5.16 5.02 30.68 0.15 -5.00 16 13 C 0.05 2.67 2.26 -11.49 -0.03 2.65 16 14 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 15 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 16 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 17 C 0.01 0.77 5.30 84.66 0.45 1.22 16 18 N -0.92 -54.16 11.35 21.45 0.24 -53.91 16 19 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.08 3.55 4.06 86.33 0.35 3.90 16 24 O -0.19 -5.17 10.65 -2.49 -0.03 -5.20 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.50 6.68 -2.39 -0.02 1.48 16 33 H 0.05 1.56 6.51 -2.39 -0.02 1.54 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 36 H 0.09 2.50 8.06 -2.39 -0.02 2.48 16 37 H 0.02 0.82 6.75 -2.39 -0.02 0.81 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 3.22 6.15 -2.39 -0.01 3.20 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 44 H 0.02 0.72 6.61 -2.39 -0.02 0.70 16 Total: -1.00 -66.60 346.13 2.95 -63.65 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.95 Total: 15.50 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 4.11 Total: -42.68 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -4.11 Total: -77.79 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.03 Total: -5.20 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.60 2.95 -63.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207948163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.691 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds