Wall clock time and date at job start Mon Mar 30 2020 20:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38140 * 119.96859 * 2 1 4 4 C 1.38733 * 119.94199 * 180.02562 * 3 2 1 5 5 O 1.35898 * 120.05981 * 179.97438 * 4 3 2 6 6 C 1.42892 * 117.00519 * 184.90770 * 5 4 3 7 7 C 1.53005 * 109.47438 * 156.40798 * 6 5 4 8 8 C 1.52996 * 109.47535 * 276.40954 * 6 5 4 9 9 C 1.38731 * 119.89031 * 0.27579 * 4 3 2 10 10 C 1.38153 * 119.93882 * 359.46834 * 9 4 3 11 11 C 1.50699 * 119.96989 * 180.27425 * 10 9 4 12 12 C 1.38259 * 120.05826 * 0.50895 * 10 9 4 13 13 C 1.50702 * 119.94782 * 179.74347 * 12 10 9 14 14 N 1.46494 * 109.47258 * 268.98168 * 13 12 10 15 15 C 1.46503 * 119.99961 * 89.96139 * 14 13 12 16 16 C 1.36941 * 120.00122 * 269.96581 * 14 13 12 17 17 H 1.07995 * 119.99612 * 359.64101 * 16 14 13 18 18 C 1.38812 * 119.99714 * 179.64836 * 16 14 13 19 19 N 1.31619 * 120.00397 * 10.50228 * 18 16 14 20 20 Si 1.86805 * 119.99385 * 190.50088 * 18 16 14 21 21 H 1.48510 * 109.46767 * 90.00322 * 20 18 16 22 22 H 1.48498 * 109.46924 * 209.99574 * 20 18 16 23 23 H 1.48497 * 109.47314 * 330.00324 * 20 18 16 24 24 H 1.08997 * 109.46776 * 90.00263 * 1 2 3 25 25 H 1.09002 * 109.46835 * 210.00345 * 1 2 3 26 26 H 1.08998 * 109.46851 * 329.99769 * 1 2 3 27 27 H 1.08004 * 120.03292 * 0.04011 * 3 2 1 28 28 H 1.09005 * 109.47305 * 36.40857 * 6 5 4 29 29 H 1.09000 * 109.46953 * 60.00238 * 7 6 5 30 30 H 1.08996 * 109.47400 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.46831 * 300.00338 * 7 6 5 32 32 H 1.09000 * 109.47067 * 299.99891 * 8 6 5 33 33 H 1.09006 * 109.46967 * 59.99491 * 8 6 5 34 34 H 1.08995 * 109.47723 * 179.97438 * 8 6 5 35 35 H 1.07997 * 120.03082 * 179.71848 * 9 4 3 36 36 H 1.08999 * 109.47285 * 268.50215 * 11 10 9 37 37 H 1.09000 * 109.47301 * 28.50162 * 11 10 9 38 38 H 1.08999 * 109.46970 * 148.50120 * 11 10 9 39 39 H 1.08999 * 109.46843 * 28.97925 * 13 12 10 40 40 H 1.08999 * 109.46810 * 148.98069 * 13 12 10 41 41 H 1.08994 * 109.47487 * 358.30745 * 15 14 13 42 42 H 1.08998 * 109.46983 * 118.31040 * 15 14 13 43 43 H 1.09001 * 109.47031 * 238.30441 * 15 14 13 44 44 H 0.97003 * 119.99698 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5844 1.1961 -0.0005 5 8 4.2657 2.3720 -0.0011 6 6 5.6885 2.2975 -0.1105 7 6 6.2264 3.6144 -0.6738 8 6 6.2941 2.0491 1.2723 9 6 4.2752 -0.0070 -0.0069 10 6 3.5804 -1.2011 -0.0015 11 6 4.3301 -2.5084 -0.0021 12 6 2.1978 -1.1978 -0.0005 13 6 1.4424 -2.5018 -0.0005 14 7 1.1753 -2.9114 -1.3814 15 6 2.1398 -3.7515 -2.0958 16 6 0.0241 -2.5091 -2.0045 17 1 -0.6895 -1.8946 -1.4759 18 6 -0.2254 -2.8913 -3.3154 19 7 0.5312 -3.8016 -3.8910 20 14 -1.6351 -2.1135 -4.2627 21 1 -1.1472 -0.9026 -4.9706 22 1 -2.1628 -3.0866 -5.2525 23 1 -2.7158 -1.7328 -3.3180 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6571 2.1321 0.0007 28 1 5.9592 1.4793 -0.7780 29 1 5.9557 4.4326 -0.0063 30 1 7.3116 3.5575 -0.7577 31 1 5.7949 3.7914 -1.6590 32 1 6.0235 2.8672 1.9398 33 1 5.9109 1.1108 1.6736 34 1 7.3794 1.9918 1.1888 35 1 5.3552 -0.0101 -0.0119 36 1 4.4832 -2.8390 -1.0294 37 1 5.2964 -2.3733 0.4838 38 1 3.7531 -3.2584 0.5388 39 1 2.0385 -3.2670 0.4967 40 1 0.4986 -2.3749 0.5299 41 1 2.9998 -3.9433 -1.4543 42 1 1.6689 -4.6970 -2.3647 43 1 2.4681 -3.2391 -3.0001 44 1 0.3569 -4.0684 -4.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238664617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:21 Heat of formation + Delta-G solvation = 6.575105 kcal Electronic energy + Delta-G solvation = -22423.170015 eV Core-core repulsion = 19341.669886 eV Total energy + Delta-G solvation = -3081.500129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.09698 -38.18954 -35.28517 -33.45316 -32.97507 -31.59366 -29.77399 -27.53835 -27.49364 -26.57860 -25.57646 -24.85742 -22.31961 -21.36377 -20.14626 -19.48481 -17.43281 -16.79262 -15.90771 -15.33574 -15.12601 -14.84329 -14.17555 -13.99319 -13.66783 -13.19035 -12.98906 -12.83982 -12.66629 -12.58027 -12.47341 -12.39599 -12.32576 -12.08541 -11.81365 -11.53673 -11.30098 -11.06503 -10.96134 -10.76872 -10.63863 -10.47553 -10.36279 -10.18665 -9.92619 -9.77280 -9.58592 -8.46805 -8.07234 -7.49634 -6.83014 -5.57226 -2.97714 1.85768 2.00816 3.39307 3.42782 3.48206 3.49759 4.22390 4.58689 4.70723 4.82883 4.99782 5.21988 5.26880 5.37685 5.40342 5.49524 5.57988 5.58762 5.65392 5.70719 5.77195 5.87157 5.90390 5.96911 5.97410 6.04424 6.05829 6.16848 6.20743 6.30514 6.41604 6.52618 6.74191 6.75860 6.85443 6.85484 7.04748 7.34672 7.40936 7.70261 7.77214 7.85005 7.99795 8.43978 9.33430 9.97146 10.39973 11.41733 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.005025 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.743550 B = 5570.501405 C = 5961.789486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.026 4.026 3 C -0.164 4.164 4 C 0.118 3.882 5 O -0.316 6.316 6 C 0.078 3.922 7 C -0.147 4.147 8 C -0.179 4.179 9 C -0.219 4.219 10 C -0.040 4.040 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.184 3.816 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.917 5.917 20 Si 0.900 3.100 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.055 0.945 41 H -0.002 1.002 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 9.137 9.634 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.027 4.027 3 C -0.183 4.183 4 C 0.073 3.927 5 O -0.231 6.231 6 C 0.021 3.979 7 C -0.204 4.204 8 C -0.237 4.237 9 C -0.238 4.238 10 C -0.041 4.041 11 C -0.171 4.171 12 C -0.120 4.120 13 C 0.057 3.943 14 N -0.321 5.321 15 C 0.021 3.979 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.730 3.270 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.206 1.206 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.063 9.209 9.457 16.598 hybrid contribution -0.414 0.470 -0.850 1.056 sum 9.649 9.678 8.607 16.151 Atomic orbital electron populations 1.20948 0.91123 1.01619 1.03334 1.19480 0.95923 0.91494 0.95830 1.20152 0.90671 0.98232 1.09209 1.18766 0.91498 0.84191 0.98242 1.86056 1.19533 1.28848 1.88689 1.22314 0.79281 0.99261 0.97034 1.21834 1.00636 0.96195 1.01767 1.22381 1.00933 1.03077 0.97262 1.20944 0.99174 0.91906 1.11757 1.19464 0.93361 0.94192 0.97109 1.20939 0.98652 0.94799 1.02710 1.20769 0.93132 0.97530 1.00588 1.19810 0.96641 0.90122 0.87756 1.44045 1.20922 1.57725 1.09421 1.21139 0.88530 0.95385 0.92801 1.19454 0.96414 1.26001 0.95074 0.90221 1.24802 0.98964 0.99024 0.97470 1.70219 1.40819 1.32200 1.13258 0.86304 0.81756 0.78733 0.80167 1.21728 1.21883 1.20608 0.89865 0.90898 0.92897 0.86291 0.91067 0.91688 0.90833 0.91710 0.91708 0.91637 0.91419 0.86356 0.90591 0.92797 0.91011 0.93381 0.92665 0.98349 0.93265 0.95211 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.31 36.01 0.30 -1.68 16 2 C -0.03 -0.50 5.88 -104.64 -0.62 -1.11 16 3 C -0.16 -2.93 9.64 -39.43 -0.38 -3.31 16 4 C 0.12 2.02 6.59 -39.22 -0.26 1.76 16 5 O -0.32 -4.91 9.81 -19.42 -0.19 -5.10 16 6 C 0.08 0.92 2.85 -26.73 -0.08 0.84 16 7 C -0.15 -1.39 9.56 37.16 0.36 -1.03 16 8 C -0.18 -1.80 9.15 37.16 0.34 -1.46 16 9 C -0.22 -3.64 7.84 -39.43 -0.31 -3.95 16 10 C -0.04 -0.72 5.88 -104.65 -0.62 -1.34 16 11 C -0.11 -1.78 8.37 36.01 0.30 -1.48 16 12 C -0.12 -2.27 5.46 -104.60 -0.57 -2.85 16 13 C 0.18 3.76 4.98 -5.20 -0.03 3.74 16 14 N -0.60 -14.86 2.92 -182.51 -0.53 -15.39 16 15 C 0.17 4.12 8.88 59.85 0.53 4.65 16 16 C -0.24 -6.45 9.29 -15.06 -0.14 -6.59 16 17 H 0.08 2.03 5.55 -52.49 -0.29 1.74 16 18 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 19 N -0.92 -26.83 9.55 55.49 0.53 -26.30 16 20 Si 0.90 22.14 29.57 -169.99 -5.03 17.11 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.08 1.61 6.96 -51.93 -0.36 1.24 16 25 H 0.07 1.25 5.78 -51.93 -0.30 0.95 16 26 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.73 6.81 -51.93 -0.35 0.37 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.12 1.69 5.40 -52.49 -0.28 1.40 16 36 H 0.08 1.26 6.85 -51.93 -0.36 0.90 16 37 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.07 1.09 5.85 -51.93 -0.30 0.79 16 39 H 0.05 0.91 5.72 -51.93 -0.30 0.61 16 40 H 0.06 1.10 5.88 -51.93 -0.31 0.79 16 41 H 0.00 -0.04 5.00 -51.93 -0.26 -0.30 16 42 H 0.05 1.34 6.87 -51.93 -0.36 0.98 16 43 H 0.03 0.82 7.25 -51.93 -0.38 0.44 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -30.38 334.76 -8.12 -38.50 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.69 Total: 0.23 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.26 Total: -14.09 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.00 Total: -41.69 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.38 -8.12 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238664617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.074 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds