Wall clock time and date at job start Mon Mar 30 2020 20:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38140 * 119.96859 * 2 1 4 4 C 1.38733 * 119.94199 * 180.02562 * 3 2 1 5 5 O 1.35898 * 120.05981 * 179.97438 * 4 3 2 6 6 C 1.42892 * 117.00519 * 184.90770 * 5 4 3 7 7 C 1.53005 * 109.47438 * 156.40798 * 6 5 4 8 8 C 1.52996 * 109.47535 * 276.40954 * 6 5 4 9 9 C 1.38731 * 119.89031 * 0.27579 * 4 3 2 10 10 C 1.38153 * 119.93882 * 359.46834 * 9 4 3 11 11 C 1.50699 * 119.96989 * 180.27425 * 10 9 4 12 12 C 1.38259 * 120.05826 * 0.50895 * 10 9 4 13 13 C 1.50702 * 119.94782 * 179.74347 * 12 10 9 14 14 N 1.46494 * 109.47258 * 268.98168 * 13 12 10 15 15 C 1.46503 * 119.99961 * 89.96139 * 14 13 12 16 16 C 1.36941 * 120.00122 * 269.96581 * 14 13 12 17 17 H 1.07995 * 119.99612 * 359.64101 * 16 14 13 18 18 C 1.38812 * 119.99714 * 179.64836 * 16 14 13 19 19 N 1.31619 * 120.00397 * 10.50228 * 18 16 14 20 20 Si 1.86805 * 119.99385 * 190.50088 * 18 16 14 21 21 H 1.48510 * 109.46767 * 90.00322 * 20 18 16 22 22 H 1.48498 * 109.46924 * 209.99574 * 20 18 16 23 23 H 1.48497 * 109.47314 * 330.00324 * 20 18 16 24 24 H 1.08997 * 109.46776 * 90.00263 * 1 2 3 25 25 H 1.09002 * 109.46835 * 210.00345 * 1 2 3 26 26 H 1.08998 * 109.46851 * 329.99769 * 1 2 3 27 27 H 1.08004 * 120.03292 * 0.04011 * 3 2 1 28 28 H 1.09005 * 109.47305 * 36.40857 * 6 5 4 29 29 H 1.09000 * 109.46953 * 60.00238 * 7 6 5 30 30 H 1.08996 * 109.47400 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.46831 * 300.00338 * 7 6 5 32 32 H 1.09000 * 109.47067 * 299.99891 * 8 6 5 33 33 H 1.09006 * 109.46967 * 59.99491 * 8 6 5 34 34 H 1.08995 * 109.47723 * 179.97438 * 8 6 5 35 35 H 1.07997 * 120.03082 * 179.71848 * 9 4 3 36 36 H 1.08999 * 109.47285 * 268.50215 * 11 10 9 37 37 H 1.09000 * 109.47301 * 28.50162 * 11 10 9 38 38 H 1.08999 * 109.46970 * 148.50120 * 11 10 9 39 39 H 1.08999 * 109.46843 * 28.97925 * 13 12 10 40 40 H 1.08999 * 109.46810 * 148.98069 * 13 12 10 41 41 H 1.08994 * 109.47487 * 358.30745 * 15 14 13 42 42 H 1.08998 * 109.46983 * 118.31040 * 15 14 13 43 43 H 1.09001 * 109.47031 * 238.30441 * 15 14 13 44 44 H 0.97003 * 119.99698 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5844 1.1961 -0.0005 5 8 4.2657 2.3720 -0.0011 6 6 5.6885 2.2975 -0.1105 7 6 6.2264 3.6144 -0.6738 8 6 6.2941 2.0491 1.2723 9 6 4.2752 -0.0070 -0.0069 10 6 3.5804 -1.2011 -0.0015 11 6 4.3301 -2.5084 -0.0021 12 6 2.1978 -1.1978 -0.0005 13 6 1.4424 -2.5018 -0.0005 14 7 1.1753 -2.9114 -1.3814 15 6 2.1398 -3.7515 -2.0958 16 6 0.0241 -2.5091 -2.0045 17 1 -0.6895 -1.8946 -1.4759 18 6 -0.2254 -2.8913 -3.3154 19 7 0.5312 -3.8016 -3.8910 20 14 -1.6351 -2.1135 -4.2627 21 1 -1.1472 -0.9026 -4.9706 22 1 -2.1628 -3.0866 -5.2525 23 1 -2.7158 -1.7328 -3.3180 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6571 2.1321 0.0007 28 1 5.9592 1.4793 -0.7780 29 1 5.9557 4.4326 -0.0063 30 1 7.3116 3.5575 -0.7577 31 1 5.7949 3.7914 -1.6590 32 1 6.0235 2.8672 1.9398 33 1 5.9109 1.1108 1.6736 34 1 7.3794 1.9918 1.1888 35 1 5.3552 -0.0101 -0.0119 36 1 4.4832 -2.8390 -1.0294 37 1 5.2964 -2.3733 0.4838 38 1 3.7531 -3.2584 0.5388 39 1 2.0385 -3.2670 0.4967 40 1 0.4986 -2.3749 0.5299 41 1 2.9998 -3.9433 -1.4543 42 1 1.6689 -4.6970 -2.3647 43 1 2.4681 -3.2391 -3.0001 44 1 0.3569 -4.0684 -4.8072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238664617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:20 Heat of formation + Delta-G solvation = -9.084511 kcal Electronic energy + Delta-G solvation = -22423.849067 eV Core-core repulsion = 19341.669886 eV Total energy + Delta-G solvation = -3082.179181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36306 -39.49413 -37.08194 -34.67899 -34.18855 -33.31646 -31.35419 -28.98165 -28.49869 -28.04205 -27.24990 -26.43811 -23.72114 -22.81840 -21.57307 -20.78387 -18.79759 -18.55846 -17.24070 -17.00638 -16.41329 -16.29634 -15.58392 -15.35320 -15.10544 -14.80631 -14.34509 -14.23126 -14.03103 -13.90252 -13.74858 -13.51926 -13.50248 -13.27582 -13.04135 -12.96921 -12.76110 -12.71379 -12.44037 -12.28203 -12.08558 -11.99930 -11.92205 -11.68988 -11.64409 -11.31930 -11.26700 -10.56542 -9.43559 -8.97679 -8.75363 -7.66732 -5.08387 0.49123 0.61263 1.45866 1.48254 1.54805 2.30423 2.54194 2.86323 3.41326 3.83296 3.89905 3.95183 3.97975 4.03070 4.14421 4.24165 4.27536 4.40407 4.48490 4.67336 4.69481 4.72212 4.78604 4.81828 4.82905 4.83691 4.86677 4.91016 4.98975 5.08945 5.11492 5.19731 5.25635 5.27787 5.42053 5.48424 5.58913 5.69011 5.70851 5.90748 5.98299 6.02131 6.37284 6.60917 7.24717 7.98136 8.36291 9.30690 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.005025 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.743550 B = 5570.501405 C = 5961.789486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.040 4.040 3 C -0.179 4.179 4 C 0.120 3.880 5 O -0.327 6.327 6 C 0.065 3.935 7 C -0.144 4.144 8 C -0.174 4.174 9 C -0.219 4.219 10 C -0.048 4.048 11 C -0.112 4.112 12 C -0.142 4.142 13 C 0.185 3.815 14 N -0.613 5.613 15 C 0.184 3.816 16 C -0.235 4.235 17 H 0.091 0.909 18 C -0.067 4.067 19 N -0.948 5.948 20 Si 0.956 3.044 21 H -0.296 1.296 22 H -0.299 1.299 23 H -0.264 1.264 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.019 0.981 43 H -0.005 1.005 44 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.497 10.575 11.093 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.041 4.041 3 C -0.198 4.198 4 C 0.075 3.925 5 O -0.242 6.242 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.231 4.231 9 C -0.238 4.238 10 C -0.049 4.049 11 C -0.168 4.168 12 C -0.145 4.145 13 C 0.059 3.941 14 N -0.335 5.335 15 C 0.040 3.960 16 C -0.365 4.365 17 H 0.108 0.892 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.786 3.214 21 H -0.224 1.224 22 H -0.226 1.226 23 H -0.188 1.188 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.160 0.840 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.013 0.987 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.390 10.677 10.967 19.080 hybrid contribution -0.700 0.130 -1.184 1.382 sum 10.690 10.807 9.783 18.077 Atomic orbital electron populations 1.20887 0.90564 1.02912 1.02190 1.19692 0.96613 0.91797 0.95982 1.20342 0.91427 0.98372 1.09656 1.18917 0.91603 0.85047 0.96972 1.86060 1.21696 1.28170 1.88322 1.22697 0.77409 1.00598 0.98339 1.21867 1.02158 0.94942 1.01130 1.22351 1.02428 1.02481 0.95881 1.21185 1.00413 0.91241 1.10926 1.19783 0.93063 0.95692 0.96343 1.20935 1.00011 0.93615 1.02258 1.20665 0.93983 0.96910 1.02910 1.19905 0.97415 0.91247 0.85483 1.44258 1.20405 1.57958 1.10918 1.20775 0.89399 0.93521 0.92325 1.19861 0.97044 1.24459 0.95090 0.89179 1.25508 1.01629 1.00131 0.98697 1.70423 1.42658 1.33910 1.12920 0.85396 0.79839 0.77278 0.78935 1.22392 1.22608 1.18824 0.92048 0.91048 0.90236 0.85242 0.91287 0.91350 0.88133 0.92547 0.91589 0.92718 0.88791 0.83970 0.91798 0.89752 0.90830 0.91711 0.92291 0.94808 0.96245 0.98688 0.95094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.71 8.31 71.24 0.59 -3.12 16 2 C -0.04 -1.48 5.88 -19.88 -0.12 -1.59 16 3 C -0.18 -6.22 9.64 22.36 0.22 -6.00 16 4 C 0.12 3.93 6.59 22.51 0.15 4.08 16 5 O -0.33 -9.57 9.81 -92.40 -0.91 -10.47 16 6 C 0.07 1.38 2.85 30.59 0.09 1.47 16 7 C -0.14 -2.33 9.56 71.98 0.69 -1.64 16 8 C -0.17 -2.98 9.15 71.98 0.66 -2.32 16 9 C -0.22 -6.84 7.84 22.37 0.18 -6.66 16 10 C -0.05 -1.63 5.88 -19.88 -0.12 -1.75 16 11 C -0.11 -3.22 8.37 71.24 0.60 -2.63 16 12 C -0.14 -5.39 5.46 -19.85 -0.11 -5.50 16 13 C 0.18 7.42 4.98 85.63 0.43 7.84 16 14 N -0.61 -30.46 2.92 -731.33 -2.13 -32.59 16 15 C 0.18 9.32 8.88 127.77 1.13 10.45 16 16 C -0.23 -12.67 9.29 84.03 0.78 -11.89 16 17 H 0.09 4.57 5.55 -2.91 -0.02 4.56 16 18 C -0.07 -3.83 5.40 84.86 0.46 -3.38 16 19 N -0.95 -57.21 9.55 21.65 0.21 -57.00 16 20 Si 0.96 46.21 29.57 68.60 2.03 48.24 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.06 2.35 6.96 -2.39 -0.02 2.33 16 25 H 0.07 2.39 5.78 -2.39 -0.01 2.38 16 26 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 27 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.07 1.49 6.36 -2.38 -0.02 1.47 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.06 6.81 -2.38 -0.02 1.04 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.14 3.65 5.40 -2.91 -0.02 3.63 16 36 H 0.06 2.01 6.85 -2.39 -0.02 2.00 16 37 H 0.08 1.89 8.07 -2.39 -0.02 1.87 16 38 H 0.07 2.07 5.85 -2.39 -0.01 2.06 16 39 H 0.06 2.35 5.72 -2.39 -0.01 2.34 16 40 H 0.06 2.30 5.88 -2.39 -0.01 2.28 16 41 H 0.03 1.42 5.00 -2.39 -0.01 1.41 16 42 H 0.02 1.08 6.87 -2.39 -0.02 1.06 16 43 H -0.01 -0.31 7.25 -2.39 -0.02 -0.33 16 44 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -66.08 334.76 5.81 -60.27 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.99 Total: 14.19 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.62 Total: -22.63 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -1.93 Total: -89.60 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.91 Total: -10.47 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -66.08 5.81 -60.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238664617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.186 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds