Wall clock time and date at job start Mon Mar 30 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47777 * 2 1 4 4 C 1.52996 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47290 * 304.99598 * 4 3 2 6 6 O 1.42900 * 109.47664 * 64.99553 * 4 3 2 7 7 C 1.52997 * 109.47492 * 185.00059 * 4 3 2 8 8 N 1.46899 * 109.47686 * 173.27633 * 7 4 3 9 9 C 1.46900 * 111.00445 * 201.71890 * 8 7 4 10 10 C 1.50704 * 109.47257 * 67.32946 * 9 8 7 11 11 H 1.08004 * 119.99681 * 5.25874 * 10 9 8 12 12 C 1.37868 * 119.99967 * 185.25306 * 10 9 8 13 13 N 1.31519 * 120.00125 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00373 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47105 * 89.99588 * 14 12 10 16 16 H 1.48499 * 109.47215 * 209.99884 * 14 12 10 17 17 H 1.48503 * 109.46767 * 329.99712 * 14 12 10 18 18 C 1.46899 * 111.00118 * 77.76256 * 8 7 4 19 19 C 1.50695 * 109.47535 * 196.24957 * 18 8 7 20 20 C 1.38233 * 119.99784 * 269.72982 * 19 18 8 21 21 C 1.38243 * 119.99782 * 179.76013 * 20 19 18 22 22 C 1.38238 * 119.99867 * 0.49097 * 21 20 19 23 23 C 1.38234 * 119.99964 * 359.77715 * 22 21 20 24 24 C 1.38233 * 120.00173 * 359.96636 * 23 22 21 25 25 H 1.09009 * 109.46912 * 300.00097 * 1 2 3 26 26 H 1.08997 * 109.46932 * 59.99668 * 1 2 3 27 27 H 1.08994 * 109.47695 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46912 * 239.99903 * 2 1 3 29 29 H 1.09007 * 109.46945 * 120.00524 * 2 1 3 30 30 H 1.09001 * 109.47201 * 60.00143 * 3 2 1 31 31 H 1.09007 * 109.47311 * 300.00300 * 3 2 1 32 32 H 0.96703 * 113.99466 * 59.99869 * 6 4 3 33 33 H 1.09000 * 109.47101 * 293.28012 * 7 4 3 34 34 H 1.09002 * 109.47280 * 53.27313 * 7 4 3 35 35 H 1.08994 * 109.47489 * 187.33607 * 9 8 7 36 36 H 1.09000 * 109.46576 * 307.33576 * 9 8 7 37 37 H 0.96997 * 120.00829 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.46748 * 316.24984 * 18 8 7 39 39 H 1.09002 * 109.46948 * 76.24319 * 18 8 7 40 40 H 1.07995 * 120.00287 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.99933 * 180.24531 * 21 20 19 42 42 H 1.08000 * 119.99738 * 179.77309 * 22 21 20 43 43 H 1.08001 * 119.99891 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9337 0.8528 0.8410 6 8 4.0459 0.8730 -1.2219 7 6 4.0802 2.8792 0.1251 8 7 5.5403 2.8682 0.2863 9 6 6.0107 4.1125 0.9095 10 6 5.5208 4.1777 2.3332 11 1 4.9930 3.3384 2.7616 12 6 5.7465 5.3086 3.0888 13 7 5.3194 5.3654 4.3314 14 14 6.6589 6.7604 2.3476 15 1 5.6859 7.6828 1.7091 16 1 7.3953 7.4806 3.4173 17 1 7.6208 6.2718 1.3272 18 6 6.2103 2.6380 -1.0006 19 6 7.6427 2.2382 -0.7568 20 6 8.6277 3.2055 -0.6861 21 6 9.9410 2.8392 -0.4576 22 6 10.2706 1.5048 -0.3098 23 6 9.2864 0.5372 -0.3861 24 6 7.9724 0.9039 -0.6093 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7603 1.3475 -2.0146 33 1 3.8181 3.4378 -0.7735 34 1 3.6224 3.3527 0.9936 35 1 7.1003 4.1350 0.8988 36 1 5.6241 4.9662 0.3528 37 1 5.4785 6.1608 4.8632 38 1 5.6975 1.8414 -1.5398 39 1 6.1841 3.5528 -1.5926 40 1 8.3708 4.2476 -0.8060 41 1 10.7100 3.5952 -0.3983 42 1 11.2972 1.2184 -0.1349 43 1 9.5440 -0.5053 -0.2711 44 1 7.2035 0.1478 -0.6693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252770929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:52 Heat of formation + Delta-G solvation = -56.178777 kcal Electronic energy + Delta-G solvation = -21980.286481 eV Core-core repulsion = 18896.065139 eV Total energy + Delta-G solvation = -3084.221342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44114 -39.30920 -37.23060 -35.01139 -34.62880 -32.69063 -31.72661 -30.93910 -29.52614 -27.13671 -25.53080 -23.57816 -23.06644 -22.34037 -22.05019 -21.31026 -19.01478 -17.63348 -17.28307 -16.99927 -16.80080 -16.18664 -15.95621 -15.76604 -15.36918 -15.22271 -14.93619 -14.46072 -14.22059 -14.14721 -13.84305 -13.67616 -13.37530 -13.15106 -12.92759 -12.64245 -12.58274 -12.50052 -12.33092 -12.05966 -11.91877 -11.83648 -11.74206 -11.58622 -11.48487 -11.32891 -10.80527 -10.46077 -9.70865 -9.55243 -8.94922 -8.29500 -6.30970 0.54162 0.60130 1.28950 1.31789 1.42387 2.31612 2.86860 3.04506 3.33157 3.57864 3.94576 4.02973 4.07078 4.12712 4.19419 4.24609 4.29527 4.34303 4.48266 4.49221 4.68514 4.72221 4.73254 4.80247 4.83021 4.88858 4.95871 4.97168 5.06968 5.14191 5.21200 5.24954 5.27145 5.28279 5.47513 5.51141 5.55648 5.65893 5.68442 5.84307 6.02867 6.22372 6.43065 6.67295 6.75197 6.92318 7.32306 8.87167 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.006966 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.495655 B = 4018.638076 C = 6240.583013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.129 3.871 5 H 0.078 0.922 6 O -0.558 6.558 7 C 0.032 3.968 8 N -0.530 5.530 9 C 0.170 3.830 10 C -0.509 4.509 11 H 0.038 0.962 12 C 0.011 3.989 13 N -0.947 5.947 14 Si 0.939 3.061 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.253 1.253 18 C 0.078 3.922 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.109 4.109 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.382 0.618 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.030 0.970 36 H -0.020 1.020 37 H 0.266 0.734 38 H 0.121 0.879 39 H 0.026 0.974 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -8.624 -14.910 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.181 4.181 4 C 0.070 3.930 5 H 0.096 0.904 6 O -0.365 6.365 7 C -0.096 4.096 8 N -0.253 5.253 9 C 0.043 3.957 10 C -0.547 4.547 11 H 0.056 0.944 12 C -0.187 4.187 13 N -0.588 5.588 14 Si 0.763 3.237 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.177 1.177 18 C -0.048 4.048 19 C -0.081 4.081 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.230 0.770 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.048 0.952 36 H -0.002 1.002 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.044 0.956 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.370 -9.314 -14.042 16.855 hybrid contribution -0.216 2.200 -0.246 2.224 sum 0.154 -7.114 -14.288 15.962 Atomic orbital electron populations 1.21767 0.95060 1.02023 1.01871 1.21402 0.96198 0.95621 1.02070 1.22215 0.94606 0.98324 1.02974 1.21723 0.92447 0.91866 0.86988 0.90372 1.86531 1.76620 1.57506 1.15888 1.22739 0.88485 0.97809 1.00551 1.61771 1.04902 1.36431 1.22185 1.20005 0.95925 0.86772 0.93021 1.21228 1.35736 1.00972 0.96766 0.94410 1.25764 0.96427 1.01404 0.95074 1.70041 1.48702 1.30226 1.09791 0.85826 0.79674 0.79414 0.78756 1.19193 1.20694 1.17699 1.21521 0.91758 1.00906 0.90656 1.19957 0.95076 0.94019 0.99024 1.21214 0.94075 0.98763 1.01272 1.21357 0.96014 0.97404 1.00366 1.21418 1.00521 0.92616 1.00186 1.21449 0.92693 1.00625 0.99797 1.21177 0.97017 0.95380 0.99201 0.93285 0.92068 0.92022 0.91120 0.93207 0.92124 0.90193 0.76950 0.94050 0.91867 0.95216 1.00225 0.92526 0.86113 0.95590 0.87623 0.84812 0.83673 0.83835 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.49 5.83 30.59 0.18 -2.31 16 3 C -0.14 -3.45 4.89 30.59 0.15 -3.30 16 4 C 0.13 3.81 3.19 30.59 0.10 3.91 16 5 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 6 O -0.56 -13.96 10.16 -148.98 -1.51 -15.48 16 7 C 0.03 1.17 4.64 86.30 0.40 1.57 16 8 N -0.53 -21.87 4.35 -905.37 -3.94 -25.81 16 9 C 0.17 8.30 3.61 85.56 0.31 8.61 16 10 C -0.51 -29.77 8.67 25.60 0.22 -29.54 16 11 H 0.04 2.46 7.87 -2.91 -0.02 2.44 16 12 C 0.01 0.62 5.47 84.65 0.46 1.09 16 13 N -0.95 -59.71 13.96 21.44 0.30 -59.41 16 14 Si 0.94 44.89 27.37 68.60 1.88 46.76 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.25 -11.42 6.70 99.48 0.67 -10.75 16 18 C 0.08 2.67 4.92 85.56 0.42 3.09 16 19 C -0.08 -2.78 5.07 -19.87 -0.10 -2.88 16 20 C -0.13 -4.63 8.11 22.27 0.18 -4.45 16 21 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 23 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 24 C -0.11 -3.42 9.70 22.27 0.22 -3.20 16 25 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.46 7.82 -2.38 -0.02 1.44 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.38 6.63 8.86 -74.06 -0.66 5.98 16 33 H 0.04 1.31 7.97 -2.39 -0.02 1.29 16 34 H 0.06 2.74 6.77 -2.39 -0.02 2.72 16 35 H 0.03 1.49 5.05 -2.39 -0.01 1.48 16 36 H -0.02 -0.96 7.25 -2.39 -0.02 -0.98 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.12 3.55 4.89 -2.38 -0.01 3.54 16 39 H 0.03 0.87 7.99 -2.39 -0.02 0.85 16 40 H 0.11 3.70 7.69 -2.91 -0.02 3.68 16 41 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -69.00 350.58 0.91 -68.08 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.26 Total: 25.41 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.92 Total: -39.56 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -3.64 Total: -85.22 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.51 Total: -15.48 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.76 kcal Total: -69.00 0.91 -68.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252770929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.905 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds