Wall clock time and date at job start Mon Mar 30 2020 20:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46774 * 2 1 4 4 C 1.52997 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47025 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47029 * 304.99637 * 6 5 4 8 8 O 1.42906 * 109.47107 * 64.99832 * 6 5 4 9 9 C 1.53001 * 109.47115 * 184.99686 * 6 5 4 10 10 N 1.46503 * 109.47173 * 179.97438 * 9 6 5 11 11 C 1.38725 * 120.00008 * 180.02562 * 10 9 6 12 12 C 1.38748 * 120.29794 * 0.30089 * 11 10 9 13 13 C 1.38167 * 120.02948 * 180.27733 * 12 11 10 14 14 C 1.38898 * 120.62136 * 359.71692 * 13 12 11 15 15 C 1.36448 * 120.60242 * 359.97438 * 14 13 12 16 16 C 1.40731 * 119.94964 * 0.02562 * 15 14 13 17 17 C 1.41037 * 120.30643 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99777 * 154.48485 * 17 16 15 19 19 C 1.39927 * 120.00493 * 334.48955 * 17 16 15 20 20 N 1.30886 * 119.99338 * 334.57116 * 19 17 16 21 21 Si 1.86795 * 120.00779 * 154.57266 * 19 17 16 22 22 H 1.48492 * 109.47512 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46771 * 300.00346 * 21 19 17 24 24 H 1.48504 * 109.47002 * 59.99815 * 21 19 17 25 25 H 1.09007 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47447 * 299.99585 * 1 2 3 27 27 H 1.08999 * 109.47189 * 60.00266 * 1 2 3 28 28 H 1.08997 * 109.47117 * 240.00061 * 2 1 3 29 29 H 1.08999 * 109.47189 * 119.99734 * 2 1 3 30 30 H 1.09002 * 109.47238 * 59.99654 * 3 2 1 31 31 H 1.09004 * 109.47023 * 300.00289 * 3 2 1 32 32 H 1.09002 * 109.47209 * 59.99713 * 4 3 2 33 33 H 1.09000 * 109.46742 * 300.00407 * 4 3 2 34 34 H 1.08997 * 109.47527 * 60.00094 * 5 4 3 35 35 H 1.09000 * 109.47365 * 299.99730 * 5 4 3 36 36 H 0.96696 * 113.99853 * 60.00170 * 8 6 5 37 37 H 1.09004 * 109.47071 * 60.00235 * 9 6 5 38 38 H 1.08999 * 109.47132 * 299.99888 * 9 6 5 39 39 H 0.97001 * 119.99743 * 0.02562 * 10 9 6 40 40 H 1.08007 * 119.98779 * 359.97438 * 12 11 10 41 41 H 1.07995 * 119.68692 * 179.74398 * 13 12 11 42 42 H 1.08005 * 119.69994 * 179.97438 * 14 13 12 43 43 H 1.08003 * 120.02447 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00214 * 354.16983 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8852 0.0026 7 1 5.9725 2.2958 0.8446 8 8 6.0872 2.3160 -1.2182 9 6 6.1196 4.3223 0.1289 10 7 7.5847 4.3223 0.1307 11 6 8.2781 5.5191 0.2368 12 6 7.5905 6.7191 0.3477 13 6 8.2867 7.9084 0.4472 14 6 9.6757 7.9175 0.4435 15 6 10.3777 6.7519 0.3420 16 6 9.6936 5.5263 0.2393 17 6 10.4117 4.3170 0.1345 18 1 9.9611 3.3914 0.4612 19 6 11.7079 4.3163 -0.3925 20 7 12.0783 5.2602 -1.2201 21 14 12.9098 2.9684 0.0849 22 1 14.2055 3.1934 -0.6045 23 1 13.1201 2.9907 1.5548 24 1 12.3587 1.6490 -0.3162 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9328 0.9290 0.8908 34 1 3.7161 3.3987 0.8912 35 1 3.7168 3.3992 -0.8887 36 1 5.8026 2.7905 -2.0112 37 1 5.7555 4.7565 1.0600 38 1 5.7570 4.9118 -0.7132 39 1 8.0698 3.4855 0.0578 40 1 6.5104 6.7240 0.3513 41 1 7.7459 8.8395 0.5291 42 1 10.2048 8.8558 0.5217 43 1 11.4576 6.7698 0.3404 44 1 11.4314 5.9112 -1.5342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253540136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:00 Heat of formation + Delta-G solvation = -86.601312 kcal Electronic energy + Delta-G solvation = -20996.334047 eV Core-core repulsion = 17910.793486 eV Total energy + Delta-G solvation = -3085.540562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14057 -39.07391 -36.72653 -35.87823 -35.38633 -33.29120 -31.39720 -30.71989 -28.96588 -26.94417 -26.27707 -23.73389 -22.67857 -22.15633 -21.84869 -21.55537 -19.68672 -17.90093 -17.39252 -17.21588 -16.57100 -16.29814 -16.05933 -15.52686 -15.40367 -14.80048 -14.64254 -14.47490 -14.28912 -14.06867 -13.88563 -13.74996 -13.68236 -13.02015 -12.75275 -12.73507 -12.61335 -12.32246 -12.00297 -11.96777 -11.83659 -11.73610 -11.67993 -11.58908 -11.35479 -11.20995 -10.81279 -10.77149 -10.66021 -9.45376 -9.12025 -8.16012 -6.13271 0.97029 1.18379 1.51001 1.65264 1.79020 2.37991 2.76377 2.85329 3.52944 3.64730 3.68762 3.98861 4.01505 4.11750 4.16073 4.35203 4.39141 4.40626 4.50683 4.61777 4.66868 4.71301 4.74285 4.82332 4.92787 4.97684 5.03419 5.05280 5.09214 5.23977 5.24648 5.26232 5.37598 5.46680 5.47870 5.53447 5.62573 5.77050 5.90088 6.11906 6.27124 6.45073 6.62064 6.77893 7.02140 7.14072 7.24034 8.18397 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.003503 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.842668 B = 7990.260619 C = 9219.290602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.137 4.137 6 C 0.106 3.894 7 H 0.091 0.909 8 O -0.572 6.572 9 C 0.103 3.897 10 N -0.743 5.743 11 C 0.111 3.889 12 C -0.180 4.180 13 C -0.198 4.198 14 C -0.145 4.145 15 C -0.216 4.216 16 C 0.021 3.979 17 C -0.553 4.553 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.833 5.833 21 Si 1.113 2.887 22 H -0.275 1.275 23 H -0.268 1.268 24 H -0.260 1.260 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.393 0.607 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -7.790 1.614 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.150 4.150 5 C -0.175 4.175 6 C 0.046 3.954 7 H 0.109 0.891 8 O -0.379 6.379 9 C -0.022 4.022 10 N -0.376 5.376 11 C 0.009 3.991 12 C -0.204 4.204 13 C -0.218 4.218 14 C -0.165 4.165 15 C -0.237 4.237 16 C 0.016 3.984 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.213 4.213 20 N -0.458 5.458 21 Si 0.931 3.069 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.185 1.185 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.908 -8.644 1.791 19.074 hybrid contribution -1.323 1.028 -0.268 1.697 sum -18.231 -7.616 1.523 19.817 Atomic orbital electron populations 1.21778 0.95352 1.01884 1.01963 1.21549 0.96310 0.96818 1.01837 1.21598 0.94542 0.96960 1.02253 1.21478 0.95703 0.95761 1.02013 1.22146 0.93121 0.98348 1.03922 1.22098 0.94157 0.91549 0.87548 0.89107 1.86569 1.77801 1.57194 1.16331 1.21982 0.81010 0.98172 1.01001 1.44017 1.04476 1.05559 1.83521 1.18113 0.90813 0.87067 1.03066 1.20401 0.98360 0.91394 1.10249 1.20526 0.93379 0.97128 1.10732 1.20443 0.94827 0.96664 1.04561 1.20618 0.97821 0.93342 1.11922 1.17675 0.90822 0.93971 0.95934 1.20239 1.02215 0.94670 1.41151 0.91542 1.28188 0.99879 1.01840 0.91443 1.70575 1.39621 1.13670 1.21893 0.83049 0.73743 0.72743 0.77336 1.19999 1.19262 1.18462 0.92458 0.92556 0.92609 0.92359 0.92274 0.91727 0.91792 0.92229 0.92535 0.89936 0.90415 0.76715 0.92213 0.92849 0.77225 0.86410 0.86284 0.87811 0.90007 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.74 5.93 30.60 0.18 -1.56 16 3 C -0.12 -1.63 5.21 30.59 0.16 -1.47 16 4 C -0.11 -1.88 5.11 30.59 0.16 -1.73 16 5 C -0.14 -2.37 4.89 30.59 0.15 -2.22 16 6 C 0.11 2.54 3.05 30.60 0.09 2.64 16 7 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 8 O -0.57 -15.35 12.62 -148.98 -1.88 -17.23 16 9 C 0.10 3.04 4.57 86.38 0.39 3.43 16 10 N -0.74 -30.17 5.52 -338.04 -1.87 -32.03 16 11 C 0.11 5.33 6.68 38.99 0.26 5.59 16 12 C -0.18 -7.88 9.30 22.37 0.21 -7.67 16 13 C -0.20 -8.68 10.04 22.41 0.22 -8.45 16 14 C -0.15 -6.97 9.96 22.01 0.22 -6.75 16 15 C -0.22 -11.77 7.89 22.46 0.18 -11.59 16 16 C 0.02 1.14 5.31 -21.17 -0.11 1.03 16 17 C -0.55 -30.40 8.43 23.37 0.20 -30.20 16 18 H 0.07 3.54 6.77 -2.91 -0.02 3.52 16 19 C 0.00 0.03 4.94 85.24 0.42 0.45 16 20 N -0.83 -47.39 12.32 21.83 0.27 -47.12 16 21 Si 1.11 45.71 30.00 68.60 2.06 47.77 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 1.12 7.82 -2.39 -0.02 1.11 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.38 8.11 9.05 -74.06 -0.67 7.44 16 37 H 0.06 1.69 7.93 -2.38 -0.02 1.67 16 38 H 0.05 1.52 7.96 -2.39 -0.02 1.50 16 39 H 0.39 16.95 6.58 -92.71 -0.61 16.34 16 40 H 0.12 4.36 6.73 -2.91 -0.02 4.34 16 41 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.08 4.72 6.49 -2.91 -0.02 4.70 16 44 H 0.28 16.64 6.69 -92.71 -0.62 16.02 16 Total: -1.00 -63.11 354.71 1.87 -61.25 By element: Atomic # 1 Polarization: 47.11 SS G_CDS: -0.15 Total: 46.95 kcal Atomic # 6 Polarization: -63.03 SS G_CDS: 3.44 Total: -59.58 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.60 Total: -79.15 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.88 Total: -17.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.06 Total: 47.77 kcal Total: -63.11 1.87 -61.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253540136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.356 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds