Wall clock time and date at job start Mon Mar 30 2020 20:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.52999 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47503 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46977 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47390 * 55.00025 * 6 5 4 8 8 O 1.42908 * 109.47208 * 294.99664 * 6 5 4 9 9 C 1.52999 * 109.47250 * 175.00015 * 6 5 4 10 10 N 1.46496 * 109.47722 * 184.99748 * 9 6 5 11 11 C 1.38856 * 120.00469 * 179.97438 * 10 9 6 12 12 C 1.39564 * 119.83805 * 359.72843 * 11 10 9 13 13 C 1.36344 * 120.15889 * 179.72127 * 12 11 10 14 14 C 1.40890 * 119.83562 * 0.54827 * 13 12 11 15 15 C 1.41130 * 120.15796 * 179.70390 * 14 13 12 16 16 H 1.08002 * 119.99890 * 204.63732 * 15 14 13 17 17 C 1.39868 * 120.00093 * 24.62666 * 15 14 13 18 18 N 1.30900 * 119.99549 * 17.96371 * 17 15 14 19 19 Si 1.86800 * 120.00249 * 197.95588 * 17 15 14 20 20 H 1.48506 * 109.46918 * 60.00132 * 19 17 15 21 21 H 1.48494 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47045 * 300.00576 * 19 17 15 23 23 C 1.40890 * 119.68649 * 359.72642 * 14 13 12 24 24 C 1.36339 * 119.83897 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47443 * 300.00203 * 1 2 3 27 27 H 1.09006 * 109.47288 * 60.00185 * 1 2 3 28 28 H 1.08995 * 109.47705 * 239.99889 * 2 1 3 29 29 H 1.08997 * 109.47345 * 119.99604 * 2 1 3 30 30 H 1.08998 * 109.47498 * 60.00002 * 3 2 1 31 31 H 1.09001 * 109.47611 * 299.99735 * 3 2 1 32 32 H 1.09004 * 109.47127 * 59.99668 * 4 3 2 33 33 H 1.09006 * 109.47078 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47498 * 60.00067 * 5 4 3 35 35 H 1.08996 * 109.46975 * 299.99520 * 5 4 3 36 36 H 0.96695 * 113.99952 * 300.00581 * 8 6 5 37 37 H 1.09003 * 109.47176 * 64.99731 * 9 6 5 38 38 H 1.09004 * 109.47110 * 304.99899 * 9 6 5 39 39 H 0.97004 * 119.99357 * 0.02562 * 10 9 6 40 40 H 1.08002 * 119.92350 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.08326 * 180.27560 * 13 12 11 42 42 H 0.97000 * 119.99705 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.07951 * 179.97438 * 23 14 13 44 44 H 1.07997 * 119.91946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8851 0.0013 7 1 5.9732 2.2961 -0.8407 8 8 6.0863 2.3152 1.2222 9 6 6.1199 4.3222 -0.1238 10 7 7.5799 4.3136 -0.2438 11 6 8.2733 5.5100 -0.3707 12 6 7.5753 6.7184 -0.3891 13 6 8.2499 7.8973 -0.5077 14 6 9.6541 7.8929 -0.6233 15 6 10.3587 9.1088 -0.7527 16 1 11.3296 9.1226 -1.2255 17 6 9.7996 10.2960 -0.2687 18 7 8.8191 10.2522 0.5975 19 14 10.4521 11.9441 -0.8582 20 1 10.2869 12.0439 -2.3307 21 1 9.6968 13.0398 -0.1994 22 1 11.8919 12.0586 -0.5128 23 6 10.3514 6.6687 -0.6097 24 6 9.6642 5.4979 -0.4844 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.7162 3.3987 0.8912 35 1 3.7170 3.3991 -0.8887 36 1 5.8009 2.7893 2.0152 37 1 5.8315 4.8885 0.7618 38 1 5.6853 4.7862 -1.0092 39 1 8.0622 3.4720 -0.2354 40 1 6.4986 6.7201 -0.3052 41 1 7.7090 8.8320 -0.5174 42 1 8.4311 11.0755 0.9328 43 1 11.4278 6.6579 -0.6983 44 1 10.1974 4.5588 -0.4742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253543566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:06 Heat of formation + Delta-G solvation = -64.113460 kcal Electronic energy + Delta-G solvation = -20468.393228 eV Core-core repulsion = 17383.827813 eV Total energy + Delta-G solvation = -3084.565415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.64469 -37.57703 -35.99568 -34.62963 -32.91848 -32.43213 -29.71099 -29.41973 -28.10296 -25.90345 -23.97966 -22.62612 -21.53201 -21.24090 -20.69238 -19.86622 -17.18355 -16.62709 -16.34105 -16.00592 -15.52902 -14.96947 -14.66881 -14.21874 -13.95777 -13.78894 -13.53142 -13.27864 -12.86783 -12.60878 -12.51420 -12.11250 -12.07967 -11.92000 -11.65478 -11.36007 -11.20275 -11.11294 -11.10548 -10.99759 -10.84624 -10.78880 -10.72024 -10.44634 -9.84538 -9.68089 -9.26617 -9.20580 -8.50796 -7.47344 -6.62224 -6.36142 -4.01056 2.94709 3.12099 3.15122 3.18535 3.38019 4.04416 4.07131 4.46410 4.56900 4.63918 4.77054 4.78371 4.87176 4.96691 5.06968 5.20390 5.31877 5.45729 5.46451 5.53391 5.67000 5.73408 5.75738 5.80119 5.84701 5.93126 5.94967 6.04336 6.17266 6.22172 6.29963 6.34474 6.95308 6.95782 7.22269 7.38159 7.56717 7.61651 7.71320 7.87077 8.17020 8.31764 8.52119 8.74143 8.83203 9.07998 9.17625 10.39364 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035360 B = 0.002547 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.674611 B =10990.545758 C =11551.400660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.149 4.149 6 C 0.097 3.903 7 H 0.099 0.901 8 O -0.559 6.559 9 C 0.109 3.891 10 N -0.757 5.757 11 C 0.093 3.907 12 C -0.166 4.166 13 C -0.125 4.125 14 C 0.073 3.927 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.809 5.809 19 Si 0.903 3.097 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.186 4.186 24 C -0.159 4.159 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.374 0.626 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.387 0.613 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.276 0.724 43 H 0.091 0.909 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 -14.202 -0.183 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.187 4.187 6 C 0.038 3.962 7 H 0.117 0.883 8 O -0.364 6.364 9 C -0.018 4.018 10 N -0.393 5.393 11 C -0.005 4.005 12 C -0.188 4.188 13 C -0.145 4.145 14 C 0.070 3.930 15 C -0.498 4.498 16 H 0.090 0.910 17 C -0.141 4.141 18 N -0.436 5.436 19 Si 0.728 3.272 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.206 4.206 24 C -0.181 4.181 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.220 0.780 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.386 -14.367 -0.439 19.642 hybrid contribution 0.114 1.017 0.192 1.042 sum -13.272 -13.350 -0.247 18.826 Atomic orbital electron populations 1.21787 0.96044 1.01462 1.01780 1.21537 0.95696 0.97102 1.01991 1.21643 0.95631 0.96612 1.01987 1.21527 0.94850 0.96322 1.02558 1.22240 0.95683 0.97726 1.03090 1.22172 0.92448 0.93755 0.87833 0.88282 1.86553 1.77277 1.56956 1.15639 1.21694 0.83748 0.95690 1.00630 1.43753 1.03491 1.05722 1.86332 1.17366 0.90780 0.85298 1.07012 1.20080 0.97098 0.92063 1.09520 1.20926 0.94468 0.96118 1.02946 1.17496 0.91775 0.92082 0.91634 1.19328 1.04135 0.91451 1.34927 0.90990 1.25796 0.94355 1.00953 0.92980 1.69850 1.21968 1.29752 1.22019 0.86460 0.79657 0.81034 0.80001 1.19103 1.20615 1.19275 1.20550 0.97428 0.92456 1.10155 1.19819 0.91831 0.96990 1.09499 0.92914 0.92801 0.92796 0.92119 0.92077 0.92103 0.92108 0.92118 0.91358 0.91421 0.90849 0.77860 0.93392 0.92892 0.77981 0.89578 0.86420 0.91311 0.89049 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.97 5.11 -26.73 -0.14 -1.11 16 5 C -0.15 -1.35 4.89 -26.73 -0.13 -1.48 16 6 C 0.10 1.09 3.00 -26.73 -0.08 1.01 16 7 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 8 O -0.56 -6.64 12.82 -35.23 -0.45 -7.09 16 9 C 0.11 1.57 4.53 -4.04 -0.02 1.55 16 10 N -0.76 -13.50 5.65 -58.50 -0.33 -13.83 16 11 C 0.09 2.06 6.67 -83.69 -0.56 1.50 16 12 C -0.17 -3.94 9.23 -39.77 -0.37 -4.31 16 13 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 14 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 15 C -0.47 -12.86 9.03 -37.88 -0.34 -13.20 16 16 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 17 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 18 N -0.81 -21.69 10.96 55.54 0.61 -21.08 16 19 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 24 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 25 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.37 3.51 9.04 45.56 0.41 3.92 16 37 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 38 H 0.05 0.79 7.91 -51.93 -0.41 0.37 16 39 H 0.39 6.47 8.47 -40.82 -0.35 6.12 16 40 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 41 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 42 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 43 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -29.07 358.68 -10.04 -39.11 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.88 Total: 11.38 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -3.36 Total: -28.29 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.28 Total: -34.91 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.45 Total: -7.09 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.07 -10.04 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253543566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.003 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds