Wall clock time and date at job start Mon Mar 30 2020 20:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.52999 * 109.47503 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47503 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46977 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47390 * 55.00025 * 6 5 4 8 8 O 1.42908 * 109.47208 * 294.99664 * 6 5 4 9 9 C 1.52999 * 109.47250 * 175.00015 * 6 5 4 10 10 N 1.46496 * 109.47722 * 184.99748 * 9 6 5 11 11 C 1.38856 * 120.00469 * 179.97438 * 10 9 6 12 12 C 1.39564 * 119.83805 * 359.72843 * 11 10 9 13 13 C 1.36344 * 120.15889 * 179.72127 * 12 11 10 14 14 C 1.40890 * 119.83562 * 0.54827 * 13 12 11 15 15 C 1.41130 * 120.15796 * 179.70390 * 14 13 12 16 16 H 1.08002 * 119.99890 * 204.63732 * 15 14 13 17 17 C 1.39868 * 120.00093 * 24.62666 * 15 14 13 18 18 N 1.30900 * 119.99549 * 17.96371 * 17 15 14 19 19 Si 1.86800 * 120.00249 * 197.95588 * 17 15 14 20 20 H 1.48506 * 109.46918 * 60.00132 * 19 17 15 21 21 H 1.48494 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47045 * 300.00576 * 19 17 15 23 23 C 1.40890 * 119.68649 * 359.72642 * 14 13 12 24 24 C 1.36339 * 119.83897 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47443 * 300.00203 * 1 2 3 27 27 H 1.09006 * 109.47288 * 60.00185 * 1 2 3 28 28 H 1.08995 * 109.47705 * 239.99889 * 2 1 3 29 29 H 1.08997 * 109.47345 * 119.99604 * 2 1 3 30 30 H 1.08998 * 109.47498 * 60.00002 * 3 2 1 31 31 H 1.09001 * 109.47611 * 299.99735 * 3 2 1 32 32 H 1.09004 * 109.47127 * 59.99668 * 4 3 2 33 33 H 1.09006 * 109.47078 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47498 * 60.00067 * 5 4 3 35 35 H 1.08996 * 109.46975 * 299.99520 * 5 4 3 36 36 H 0.96695 * 113.99952 * 300.00581 * 8 6 5 37 37 H 1.09003 * 109.47176 * 64.99731 * 9 6 5 38 38 H 1.09004 * 109.47110 * 304.99899 * 9 6 5 39 39 H 0.97004 * 119.99357 * 0.02562 * 10 9 6 40 40 H 1.08002 * 119.92350 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.08326 * 180.27560 * 13 12 11 42 42 H 0.97000 * 119.99705 * 180.02562 * 18 17 15 43 43 H 1.08004 * 120.07951 * 179.97438 * 23 14 13 44 44 H 1.07997 * 119.91946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8851 0.0013 7 1 5.9732 2.2961 -0.8407 8 8 6.0863 2.3152 1.2222 9 6 6.1199 4.3222 -0.1238 10 7 7.5799 4.3136 -0.2438 11 6 8.2733 5.5100 -0.3707 12 6 7.5753 6.7184 -0.3891 13 6 8.2499 7.8973 -0.5077 14 6 9.6541 7.8929 -0.6233 15 6 10.3587 9.1088 -0.7527 16 1 11.3296 9.1226 -1.2255 17 6 9.7996 10.2960 -0.2687 18 7 8.8191 10.2522 0.5975 19 14 10.4521 11.9441 -0.8582 20 1 10.2869 12.0439 -2.3307 21 1 9.6968 13.0398 -0.1994 22 1 11.8919 12.0586 -0.5128 23 6 10.3514 6.6687 -0.6097 24 6 9.6642 5.4979 -0.4844 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.7162 3.3987 0.8912 35 1 3.7170 3.3991 -0.8887 36 1 5.8009 2.7893 2.0152 37 1 5.8315 4.8885 0.7618 38 1 5.6853 4.7862 -1.0092 39 1 8.0622 3.4720 -0.2354 40 1 6.4986 6.7201 -0.3052 41 1 7.7090 8.8320 -0.5174 42 1 8.4311 11.0755 0.9328 43 1 11.4278 6.6579 -0.6983 44 1 10.1974 4.5588 -0.4742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253543566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:05 Heat of formation + Delta-G solvation = -80.896854 kcal Electronic energy + Delta-G solvation = -20469.121011 eV Core-core repulsion = 17383.827813 eV Total energy + Delta-G solvation = -3085.293198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99300 -39.00346 -36.77449 -36.19317 -34.61496 -33.23060 -31.36182 -31.11937 -29.43504 -27.10487 -25.58543 -23.77129 -22.78706 -22.09617 -21.85496 -21.52038 -19.15269 -17.96448 -17.32653 -17.17605 -16.80444 -16.30094 -16.01707 -15.57693 -15.20163 -14.74602 -14.48715 -14.44337 -14.18537 -14.03534 -13.89945 -13.78379 -13.42509 -13.03414 -12.74902 -12.72801 -12.68555 -12.56411 -12.26372 -11.98603 -11.78550 -11.71864 -11.64915 -11.59029 -11.34033 -11.17490 -11.06698 -10.74814 -10.30273 -9.41474 -8.54983 -8.16460 -6.00566 1.10916 1.18200 1.40105 1.51090 1.60109 2.27515 2.81299 2.85460 3.54457 3.69373 3.84792 4.01286 4.02889 4.14716 4.18894 4.37743 4.41837 4.44503 4.50095 4.63843 4.72149 4.75847 4.83487 4.94691 4.99970 5.02756 5.07966 5.10522 5.14429 5.25563 5.26331 5.28180 5.38906 5.45456 5.49484 5.54906 5.68612 5.79413 5.95811 6.18362 6.38935 6.66761 6.80042 6.87630 7.08205 7.14975 7.31151 8.48294 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035360 B = 0.002547 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.674611 B =10990.545758 C =11551.400660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.143 4.143 6 C 0.111 3.889 7 H 0.100 0.900 8 O -0.570 6.570 9 C 0.104 3.896 10 N -0.748 5.748 11 C 0.111 3.889 12 C -0.175 4.175 13 C -0.143 4.143 14 C 0.033 3.967 15 C -0.506 4.506 16 H 0.068 0.932 17 C 0.031 3.969 18 N -0.841 5.841 19 Si 0.978 3.022 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.195 4.195 24 C -0.168 4.168 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.385 0.615 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.396 0.604 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.282 0.718 43 H 0.096 0.904 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 -15.246 -0.265 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.148 4.148 5 C -0.181 4.181 6 C 0.051 3.949 7 H 0.117 0.883 8 O -0.377 6.377 9 C -0.021 4.021 10 N -0.383 5.383 11 C 0.012 3.988 12 C -0.197 4.197 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.537 4.537 16 H 0.086 0.914 17 C -0.181 4.181 18 N -0.470 5.470 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.215 4.215 24 C -0.190 4.190 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.230 0.770 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.318 -15.460 -0.510 21.078 hybrid contribution 0.329 1.142 0.251 1.214 sum -13.989 -14.318 -0.259 20.019 Atomic orbital electron populations 1.21788 0.95555 1.01866 1.01874 1.21540 0.96156 0.96754 1.01945 1.21613 0.94931 0.96972 1.02087 1.21469 0.95414 0.95659 1.02213 1.22179 0.93861 0.98357 1.03678 1.22044 0.93703 0.91338 0.87797 0.88258 1.86534 1.77633 1.57285 1.16260 1.21924 0.81551 0.98146 1.00511 1.43835 1.04994 1.04510 1.84951 1.17480 0.90866 0.86423 1.04066 1.20239 0.98144 0.91808 1.09539 1.20871 0.94429 0.96516 1.04541 1.17840 0.92535 0.93121 0.93507 1.19560 1.04673 0.92804 1.36687 0.91407 1.26631 0.94564 1.04392 0.92537 1.69913 1.23185 1.31005 1.22856 0.85332 0.79162 0.76219 0.79384 1.18758 1.19422 1.18663 1.20754 0.97953 0.92763 1.10028 1.20116 0.92461 0.97442 1.09024 0.92406 0.92715 0.92700 0.92139 0.92176 0.92002 0.91992 0.92252 0.91911 0.90756 0.90390 0.76591 0.93560 0.92803 0.76966 0.87655 0.88226 0.90735 0.88533 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.13 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -1.56 5.21 30.59 0.16 -1.40 16 4 C -0.11 -1.62 5.11 30.59 0.16 -1.46 16 5 C -0.14 -2.23 4.89 30.59 0.15 -2.08 16 6 C 0.11 2.21 3.00 30.59 0.09 2.30 16 7 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 8 O -0.57 -12.12 12.82 -148.98 -1.91 -14.03 16 9 C 0.10 2.77 4.53 86.38 0.39 3.16 16 10 N -0.75 -24.93 5.65 -338.99 -1.91 -26.85 16 11 C 0.11 4.81 6.67 38.67 0.26 5.06 16 12 C -0.18 -8.29 9.23 22.15 0.20 -8.08 16 13 C -0.14 -7.84 8.64 22.48 0.19 -7.65 16 14 C 0.03 1.86 5.57 -21.27 -0.12 1.74 16 15 C -0.51 -28.81 9.03 23.38 0.21 -28.60 16 16 H 0.07 3.74 7.91 -2.91 -0.02 3.71 16 17 C 0.03 1.63 5.13 85.23 0.44 2.07 16 18 N -0.84 -46.32 10.96 21.82 0.24 -46.08 16 19 Si 0.98 40.42 29.60 68.60 2.03 42.45 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 C -0.19 -9.97 9.74 22.48 0.22 -9.75 16 24 C -0.17 -7.58 9.82 22.15 0.22 -7.37 16 25 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.01 7.82 -2.38 -0.02 0.99 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.39 6.29 9.04 -74.06 -0.67 5.62 16 37 H 0.05 1.28 7.94 -2.39 -0.02 1.27 16 38 H 0.05 1.47 7.91 -2.38 -0.02 1.45 16 39 H 0.40 12.11 8.47 -92.71 -0.79 11.32 16 40 H 0.11 4.46 6.68 -2.91 -0.02 4.44 16 41 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 42 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 43 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -63.09 358.68 1.43 -61.66 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.48 Total: 37.29 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 3.47 Total: -54.44 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.67 Total: -72.92 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.91 Total: -14.03 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -63.09 1.43 -61.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253543566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.233 kcal (2) G-P(sol) polarization free energy of solvation -63.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds