Wall clock time and date at job start Mon Mar 30 2020 20:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 C 1.53005 * 109.47047 * 120.00098 * 2 1 3 5 5 C 1.52998 * 109.46801 * 175.00192 * 4 2 1 6 6 C 1.53005 * 109.46801 * 179.97438 * 5 4 2 7 7 H 1.08993 * 109.47333 * 54.99309 * 6 5 4 8 8 C 1.52999 * 109.46950 * 174.99999 * 6 5 4 9 9 N 1.46502 * 109.46859 * 294.99664 * 6 5 4 10 10 C 1.39780 * 120.00186 * 155.00528 * 9 6 5 11 11 C 1.38953 * 120.00626 * 0.26838 * 10 9 6 12 12 C 1.38011 * 119.99473 * 180.23480 * 11 10 9 13 13 C 1.38889 * 120.00542 * 359.49883 * 12 11 10 14 14 O 1.35806 * 119.99420 * 180.27611 * 13 12 11 15 15 C 1.34807 * 116.99757 * 354.45180 * 14 13 12 16 16 H 1.08004 * 119.99812 * 5.06523 * 15 14 13 17 17 C 1.38621 * 120.00005 * 185.05742 * 15 14 13 18 18 N 1.31576 * 120.00077 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99895 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47083 * 89.99841 * 19 17 15 21 21 H 1.48497 * 109.47064 * 210.00154 * 19 17 15 22 22 H 1.48501 * 109.47234 * 329.99792 * 19 17 15 23 23 C 1.38904 * 120.01567 * 0.24923 * 13 12 11 24 24 C 1.38009 * 120.00120 * 0.02562 * 23 13 12 25 25 H 1.09001 * 109.46870 * 299.99939 * 1 2 3 26 26 H 1.08992 * 109.47167 * 60.00335 * 1 2 3 27 27 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46912 * 239.99314 * 2 1 3 29 29 H 1.08999 * 109.46655 * 299.99538 * 3 2 1 30 30 H 1.08993 * 109.47327 * 60.00049 * 3 2 1 31 31 H 1.09001 * 109.46911 * 180.02562 * 3 2 1 32 32 H 1.08992 * 109.47401 * 54.99709 * 4 2 1 33 33 H 1.09005 * 109.46698 * 294.99441 * 4 2 1 34 34 H 1.08996 * 109.47880 * 60.00260 * 5 4 2 35 35 H 1.08997 * 109.47450 * 299.98894 * 5 4 2 36 36 H 1.08997 * 109.47165 * 299.99384 * 8 6 5 37 37 H 1.09000 * 109.47264 * 60.00038 * 8 6 5 38 38 H 1.09005 * 109.46748 * 179.97438 * 8 6 5 39 39 H 0.97007 * 120.00389 * 334.99507 * 9 6 5 40 40 H 1.08004 * 120.00250 * 0.02562 * 11 10 9 41 41 H 1.08000 * 119.99170 * 179.76867 * 12 11 10 42 42 H 0.97008 * 120.00012 * 179.97438 * 18 17 15 43 43 H 1.07995 * 119.99933 * 180.02562 * 23 13 12 44 44 H 1.08000 * 120.00392 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0749 -1.5517 2.4375 7 1 3.5732 -2.5148 2.5318 8 6 5.5842 -1.7723 2.3187 9 7 3.7923 -0.7361 3.6212 10 6 3.6670 -1.3426 4.8743 11 6 3.8161 -2.7185 4.9984 12 6 3.6876 -3.3177 6.2350 13 6 3.4196 -2.5443 7.3571 14 8 3.2988 -3.1335 8.5747 15 6 3.3353 -4.4806 8.6090 16 1 3.5378 -5.0385 7.7066 17 6 3.1130 -5.1499 9.8024 18 7 3.1491 -6.4647 9.8360 19 14 2.7622 -4.1850 11.3630 20 1 1.2983 -3.9741 11.4960 21 1 3.2618 -4.9443 12.5373 22 1 3.4478 -2.8694 11.2962 23 6 3.2757 -1.1682 7.2343 24 6 3.3985 -0.5692 5.9970 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1582 2.1370 34 1 3.9995 0.1675 1.1421 35 1 3.8532 -1.3941 0.3004 36 1 5.7945 -2.3792 1.4380 37 1 6.0858 -0.8092 2.2245 38 1 5.9476 -2.2854 3.2091 39 1 3.6922 0.2250 3.5354 40 1 4.0291 -3.3195 4.1266 41 1 3.7997 -4.3876 6.3308 42 1 2.9940 -6.9330 10.6713 43 1 3.0678 -0.5670 8.1070 44 1 3.2863 0.5007 5.9015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:47 Heat of formation + Delta-G solvation = -25.391653 kcal Electronic energy + Delta-G solvation = -21134.293473 eV Core-core repulsion = 18051.407161 eV Total energy + Delta-G solvation = -3082.886312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.28571 -38.11731 -36.78255 -35.09592 -32.28750 -31.42112 -30.23546 -29.05123 -27.42018 -27.15159 -24.92744 -23.90926 -22.49765 -21.01635 -20.14538 -20.05122 -17.83708 -17.43753 -16.33883 -15.73244 -15.31772 -14.55138 -14.43422 -14.24319 -13.96799 -13.69038 -13.54848 -13.38339 -13.11429 -12.82268 -12.56439 -12.40564 -12.35406 -12.14971 -11.86875 -11.81877 -11.65062 -11.51144 -11.25249 -11.10296 -10.86485 -10.74911 -10.64947 -10.52677 -10.46427 -10.05230 -9.26217 -9.16676 -8.51086 -8.21347 -6.44541 -6.28125 -3.92285 2.15561 2.51930 3.29824 3.33287 3.48784 3.82980 4.34793 4.45149 4.63105 4.66282 4.69743 4.97588 5.05822 5.09473 5.13959 5.23473 5.36209 5.39193 5.49447 5.52854 5.60066 5.62217 5.64353 5.68464 5.71902 5.75217 5.86310 5.90932 5.97992 6.00449 6.16298 6.19116 6.22118 6.26065 6.32897 6.43353 6.79774 6.97819 7.02197 7.38289 7.51615 7.86553 7.94937 8.16067 8.27123 9.08739 9.75506 10.80597 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027619 B = 0.003206 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.563234 B = 8731.272291 C = 8904.681406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.125 4.125 6 C 0.154 3.846 7 H 0.074 0.926 8 C -0.169 4.169 9 N -0.751 5.751 10 C 0.137 3.863 11 C -0.148 4.148 12 C -0.176 4.176 13 C 0.115 3.885 14 O -0.229 6.229 15 C -0.383 4.383 16 H 0.103 0.897 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.148 4.148 24 C -0.150 4.150 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.389 0.611 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.276 0.724 43 H 0.116 0.884 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 13.270 -18.899 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.163 4.163 6 C 0.048 3.952 7 H 0.092 0.908 8 C -0.228 4.228 9 N -0.386 5.386 10 C 0.039 3.961 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.064 3.936 14 O -0.136 6.136 15 C -0.459 4.459 16 H 0.120 0.880 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.185 1.185 23 C -0.168 4.168 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.222 0.778 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.618 13.006 -18.638 22.735 hybrid contribution -0.140 0.442 0.587 0.748 sum -0.758 13.448 -18.051 22.522 Atomic orbital electron populations 1.21843 0.95403 1.01740 1.01570 1.21137 0.95625 0.96316 0.98541 1.21891 1.01075 0.96095 1.01519 1.21637 0.95041 1.00767 0.97671 1.21914 0.96013 1.00995 0.97392 1.20740 0.94440 0.95133 0.84931 0.90808 1.22313 0.96998 1.01637 1.01866 1.44336 1.82612 1.07943 1.03679 1.17449 1.01689 0.91927 0.85083 1.20376 1.06955 0.92510 0.97132 1.21124 1.05701 1.00888 0.91889 1.18956 0.97393 0.91803 0.85447 1.83572 1.82466 1.22733 1.24799 1.20700 1.49172 0.77431 0.98602 0.87999 1.24419 0.96264 0.95079 0.98494 1.69664 1.48882 1.06170 1.28154 0.86186 0.79064 0.80479 0.81160 1.20097 1.21046 1.18465 1.19985 1.07500 0.92209 0.97058 1.20094 1.07880 0.98059 0.91217 0.92665 0.92999 0.92712 0.91533 0.93123 0.92704 0.92523 0.91984 0.91401 0.91567 0.91152 0.92555 0.92835 0.92003 0.77759 0.87245 0.85045 0.91350 0.86625 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.06 8.95 37.16 0.33 -0.72 16 4 C -0.11 -1.01 4.57 -26.73 -0.12 -1.13 16 5 C -0.13 -1.06 4.51 -26.73 -0.12 -1.18 16 6 C 0.15 1.67 2.27 -67.93 -0.15 1.52 16 7 H 0.07 0.90 6.49 -51.93 -0.34 0.56 16 8 C -0.17 -1.80 9.42 37.16 0.35 -1.45 16 9 N -0.75 -9.44 4.70 -52.11 -0.25 -9.69 16 10 C 0.14 2.26 6.64 -83.71 -0.56 1.71 16 11 C -0.15 -2.71 8.83 -39.40 -0.35 -3.06 16 12 C -0.18 -3.88 9.16 -39.42 -0.36 -4.24 16 13 C 0.11 2.71 6.65 -39.09 -0.26 2.45 16 14 O -0.23 -6.22 8.58 -0.06 0.00 -6.22 16 15 C -0.38 -11.08 9.94 30.87 0.31 -10.78 16 16 H 0.10 3.01 5.43 -52.48 -0.28 2.72 16 17 C 0.06 1.70 5.49 -17.52 -0.10 1.61 16 18 N -0.89 -26.40 13.96 55.48 0.77 -25.63 16 19 Si 0.91 22.33 28.62 -169.99 -4.86 17.47 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.15 -2.98 9.98 -39.42 -0.39 -3.37 16 24 C -0.15 -2.57 9.89 -39.40 -0.39 -2.96 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 39 H 0.39 4.28 8.62 -40.82 -0.35 3.92 16 40 H 0.11 1.79 6.08 -52.48 -0.32 1.47 16 41 H 0.13 3.05 5.63 -52.49 -0.30 2.76 16 42 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -29.90 352.25 -8.04 -37.94 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.28 Total: 4.24 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.73 Total: -23.42 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.53 Total: -35.32 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.86 Total: 17.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.90 -8.04 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.545 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds