Wall clock time and date at job start Mon Mar 30 2020 20:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.52998 * 109.47705 * 174.99884 * 5 4 3 8 8 N 1.46898 * 109.47092 * 295.00148 * 5 4 3 9 9 C 1.46905 * 110.99865 * 155.00007 * 8 5 4 10 10 H 1.08999 * 109.47113 * 324.99410 * 9 8 5 11 11 C 1.53004 * 109.47092 * 205.00166 * 9 8 5 12 12 C 1.50705 * 109.47427 * 64.99411 * 11 9 8 13 13 H 1.08001 * 119.99712 * 0.02562 * 12 11 9 14 14 C 1.37870 * 119.99954 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00370 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99765 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47110 * 90.00015 * 16 14 12 18 18 H 1.48497 * 109.47410 * 209.99809 * 16 14 12 19 19 H 1.48498 * 109.47241 * 330.00427 * 16 14 12 20 20 C 1.50700 * 109.47551 * 85.00176 * 9 8 5 21 21 C 1.38232 * 119.99968 * 39.71922 * 20 9 8 22 22 C 1.38237 * 119.99885 * 179.78996 * 21 20 9 23 23 C 1.38234 * 119.99704 * 0.44701 * 22 21 20 24 24 C 1.38235 * 120.00163 * 359.81142 * 23 22 21 25 25 C 1.38228 * 119.99758 * 220.00176 * 20 9 8 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 30 30 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 32 32 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 33 33 H 1.09001 * 109.46974 * 300.00556 * 7 5 4 34 34 H 1.09000 * 109.46929 * 59.99736 * 7 5 4 35 35 H 1.09000 * 109.47812 * 179.97438 * 7 5 4 36 36 H 1.00895 * 111.00265 * 278.94995 * 8 5 4 37 37 H 1.08993 * 109.47660 * 184.99854 * 11 9 8 38 38 H 1.09000 * 109.46917 * 304.99928 * 11 9 8 39 39 H 0.97005 * 119.99756 * 180.02562 * 15 14 12 40 40 H 1.08007 * 119.99810 * 0.02562 * 21 20 9 41 41 H 1.07994 * 119.99725 * 180.27940 * 22 21 20 42 42 H 1.08007 * 119.99409 * 179.83584 * 23 22 21 43 43 H 1.08000 * 119.99745 * 180.02562 * 24 23 22 44 44 H 1.08006 * 120.00588 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 0.8424 7 6 5.6781 2.4636 0.1251 8 7 3.8218 3.2684 -1.2546 9 6 3.8585 4.7270 -1.0831 10 1 3.5119 4.9839 -0.0821 11 6 2.9490 5.3857 -2.1222 12 6 1.5186 4.9893 -1.8614 13 1 1.2818 4.3335 -1.0366 14 6 0.5123 5.4639 -2.6756 15 7 0.8006 6.2621 -3.6803 16 14 -1.2608 4.9731 -2.3518 17 1 -1.8851 5.9538 -1.4277 18 1 -2.0110 4.9535 -3.6332 19 1 -1.2960 3.6219 -1.7368 20 6 5.2708 5.2193 -1.2676 21 6 6.0698 4.6730 -2.2545 22 6 7.3639 5.1276 -2.4265 23 6 7.8619 6.1220 -1.6056 24 6 7.0647 6.6646 -0.6152 25 6 5.7691 6.2130 -0.4461 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 3.8575 0.6435 0.8891 32 1 3.8568 0.6439 -0.8908 33 1 5.9274 1.9544 1.0560 34 1 6.0685 1.8925 -0.7172 35 1 6.1215 3.4594 0.1251 36 1 4.4342 2.9768 -2.0016 37 1 3.0440 6.4693 -2.0535 38 1 3.2405 5.0580 -3.1201 39 1 0.0924 6.5963 -4.2529 40 1 5.6817 3.8936 -2.8937 41 1 7.9865 4.7040 -3.2005 42 1 8.8739 6.4753 -1.7384 43 1 7.4537 7.4418 0.0259 44 1 5.1463 6.6369 0.3278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090664607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:09 Heat of formation + Delta-G solvation = -34.477078 kcal Electronic energy + Delta-G solvation = -22165.331613 eV Core-core repulsion = 19082.051328 eV Total energy + Delta-G solvation = -3083.280285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44372 -37.74933 -36.59433 -33.80761 -32.22015 -30.65014 -29.67512 -29.17905 -27.63606 -26.06983 -24.41034 -22.77341 -22.35452 -21.84149 -20.21613 -19.67304 -16.92722 -16.08843 -15.91662 -15.81144 -15.06276 -14.99066 -14.78101 -14.46019 -14.10103 -13.90365 -13.39681 -13.07112 -12.72161 -12.62067 -12.45392 -12.34260 -12.15187 -11.85240 -11.30027 -11.22558 -11.01484 -10.95311 -10.79143 -10.72987 -10.58745 -10.52376 -10.33494 -10.14342 -9.65026 -9.26060 -9.00429 -8.62372 -8.28727 -8.17481 -7.69389 -5.90605 -3.88867 1.69797 1.70821 3.35430 3.42294 3.44558 4.08352 4.11473 4.52995 4.73596 5.14460 5.18877 5.25335 5.27686 5.40446 5.45909 5.46805 5.54141 5.54345 5.65447 5.67535 5.82040 5.84519 5.87876 5.89220 5.96499 6.03626 6.12457 6.17904 6.30220 6.36296 6.42325 6.49594 6.56786 6.75870 6.77328 6.83182 6.98750 7.32303 7.53133 7.53248 7.66137 7.97446 8.02374 8.13213 8.53933 9.15673 9.72138 11.21217 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.006881 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.118147 B = 4068.367785 C = 6069.733666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.403 6.403 3 C 0.062 3.938 4 C -0.098 4.098 5 C 0.084 3.916 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.654 5.654 9 C 0.129 3.871 10 H 0.074 0.926 11 C 0.042 3.958 12 C -0.488 4.488 13 H 0.059 0.941 14 C 0.052 3.948 15 N -0.901 5.901 16 Si 0.887 3.113 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.334 0.666 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.257 0.743 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -6.040 7.086 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.322 6.322 3 C -0.014 4.014 4 C -0.136 4.136 5 C -0.026 4.026 6 H 0.093 0.907 7 C -0.240 4.240 8 N -0.284 5.284 9 C 0.019 3.981 10 H 0.092 0.908 11 C 0.004 3.996 12 C -0.527 4.527 13 H 0.077 0.923 14 C -0.148 4.148 15 N -0.541 5.541 16 Si 0.716 3.284 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.087 4.087 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.156 4.156 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.173 -6.174 7.033 13.104 hybrid contribution -0.222 0.312 0.071 0.389 sum 8.950 -5.863 7.104 12.843 Atomic orbital electron populations 1.22653 0.81560 1.01769 1.00264 1.87755 1.19339 1.29538 1.95614 1.22598 0.93537 0.83417 1.01835 1.21434 0.93797 0.96508 1.01907 1.21563 0.92565 0.94549 0.93957 0.90727 1.22586 0.97703 1.02192 1.01481 1.60760 1.57338 1.05330 1.05011 1.21033 0.88611 0.86511 1.01920 0.90826 1.19090 0.93135 0.94596 0.92736 1.21080 0.90994 1.27572 1.13031 0.92295 1.24985 0.98692 0.95617 0.95487 1.69966 1.32354 1.34097 1.17722 0.86678 0.85605 0.78785 0.77371 1.21041 1.21513 1.20004 1.21145 0.97784 0.95495 0.94227 1.20949 0.93891 1.00701 0.98084 1.21045 0.95830 0.97584 0.99238 1.20995 0.99564 0.98169 0.96904 1.21070 0.94528 0.99840 0.98445 1.21068 0.95361 0.97467 0.99931 0.93809 0.90376 0.94526 0.90228 0.94268 0.92100 0.91486 0.92966 0.92809 0.92004 0.84538 0.96385 0.96278 0.93297 0.86270 0.86702 0.86886 0.86753 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.40 -6.70 10.70 -35.23 -0.38 -7.08 16 3 C 0.06 1.03 5.83 37.16 0.22 1.25 16 4 C -0.10 -1.43 5.26 -26.74 -0.14 -1.57 16 5 C 0.08 1.24 2.59 -67.72 -0.18 1.07 16 6 H 0.07 1.14 7.43 -51.93 -0.39 0.76 16 7 C -0.18 -2.33 8.59 37.16 0.32 -2.01 16 8 N -0.65 -11.37 5.21 -100.95 -0.53 -11.90 16 9 C 0.13 2.46 2.17 -68.86 -0.15 2.31 16 10 H 0.07 1.43 7.29 -51.93 -0.38 1.06 16 11 C 0.04 1.03 4.63 -27.88 -0.13 0.90 16 12 C -0.49 -13.18 8.84 -34.44 -0.30 -13.48 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.08 -1.43 2.95 -104.63 -0.31 -1.73 16 21 C -0.12 -1.84 8.39 -39.58 -0.33 -2.17 16 22 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.12 -1.87 9.65 -39.59 -0.38 -2.25 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 35 H 0.06 0.86 5.93 -51.93 -0.31 0.55 16 36 H 0.33 5.56 6.08 -39.29 -0.24 5.32 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.12 1.82 6.50 -52.48 -0.34 1.48 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.75 8.04 -52.48 -0.42 1.32 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -29.71 356.20 -8.90 -38.61 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.51 Total: 5.59 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.56 Total: -21.05 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.21 Total: -38.02 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.71 -8.90 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090664607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.133 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds