Wall clock time and date at job start Mon Mar 30 2020 20:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46853 * 2 1 4 4 C 1.50702 * 109.47228 * 120.00395 * 2 1 3 5 5 N 1.30405 * 119.28954 * 94.97662 * 4 2 1 6 6 C 1.33785 * 122.02606 * 179.75297 * 5 4 2 7 7 C 1.50694 * 119.79248 * 180.27194 * 6 5 4 8 8 C 1.53005 * 109.46789 * 255.25931 * 7 6 5 9 9 C 1.53000 * 109.47273 * 15.25851 * 7 6 5 10 10 C 1.52995 * 109.46954 * 135.26109 * 7 6 5 11 11 C 1.35645 * 120.40993 * 0.53448 * 6 5 4 12 12 C 1.41992 * 118.60184 * 359.48538 * 11 6 5 13 13 N 1.31470 * 120.91470 * 180.23010 * 12 11 6 14 14 C 1.46501 * 119.99570 * 173.94023 * 13 12 11 15 15 C 1.50701 * 109.47128 * 114.44911 * 14 13 12 16 16 H 1.08001 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00186 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99865 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99893 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47319 * 89.99482 * 19 17 15 21 21 H 1.48506 * 109.47365 * 209.99369 * 19 17 15 22 22 H 1.48500 * 109.47224 * 329.99381 * 19 17 15 23 23 N 1.35661 * 119.28668 * 274.99696 * 4 2 1 24 24 H 0.96993 * 120.31563 * 0.02562 * 23 4 2 25 25 H 1.09005 * 109.46919 * 299.99459 * 1 2 3 26 26 H 1.08999 * 109.47442 * 59.99332 * 1 2 3 27 27 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46424 * 240.00418 * 2 1 3 29 29 H 1.08999 * 109.47242 * 300.00183 * 3 2 1 30 30 H 1.09005 * 109.46916 * 60.00539 * 3 2 1 31 31 H 1.09002 * 109.46889 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47522 * 60.00203 * 8 7 6 33 33 H 1.09005 * 109.46575 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47367 * 299.99925 * 8 7 6 35 35 H 1.08995 * 109.46907 * 60.00055 * 9 7 6 36 36 H 1.08997 * 109.47144 * 179.97438 * 9 7 6 37 37 H 1.08995 * 109.47077 * 299.99821 * 9 7 6 38 38 H 1.08998 * 109.47290 * 60.00022 * 10 7 6 39 39 H 1.09010 * 109.47292 * 179.97438 * 10 7 6 40 40 H 1.08995 * 109.47148 * 299.99897 * 10 7 6 41 41 H 1.08006 * 120.69909 * 179.76138 * 11 6 5 42 42 H 1.09003 * 109.47479 * 234.44371 * 14 13 12 43 43 H 1.08997 * 109.47543 * 354.44918 * 14 13 12 44 44 H 0.97003 * 119.99565 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.3381 -1.9760 1.1562 6 6 2.7934 -2.6591 2.2127 7 6 3.1372 -4.1192 2.0686 8 6 2.0411 -4.9675 2.7168 9 6 3.2457 -4.4736 0.5842 10 6 4.4737 -4.3988 2.7588 11 6 2.9423 -2.0468 3.4138 12 6 2.6160 -0.6689 3.5196 13 7 2.7474 -0.0293 4.6606 14 6 2.5329 1.4188 4.7174 15 6 1.3239 1.7146 5.5671 16 1 0.7704 0.9048 6.0192 17 6 0.9244 3.0189 5.7673 18 7 -0.1310 3.2769 6.5084 19 14 1.8812 4.4194 4.9848 20 1 1.3182 4.7145 3.6427 21 1 1.7787 5.6283 5.8413 22 1 3.3075 4.0290 4.8484 23 7 2.1564 -0.0198 2.3914 24 1 1.9238 0.9211 2.4286 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.0890 -4.7683 2.2252 33 1 2.2897 -6.0237 2.6122 34 1 1.9638 -4.7150 3.7743 35 1 4.0264 -3.8693 0.1225 36 1 3.4948 -5.5296 0.4801 37 1 2.2935 -4.2744 0.0926 38 1 4.3964 -4.1463 3.8163 39 1 4.7223 -5.4551 2.6551 40 1 5.2545 -3.7944 2.2971 41 1 3.3059 -2.5946 4.2707 42 1 3.4092 1.8992 5.1528 43 1 2.3714 1.8021 3.7099 44 1 -0.4123 4.1946 6.6489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362667708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:20 Heat of formation + Delta-G solvation = 38.989172 kcal Electronic energy + Delta-G solvation = -22216.063397 eV Core-core repulsion = 19168.261598 eV Total energy + Delta-G solvation = -3047.801799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88582 -37.60867 -36.02430 -34.33442 -32.79841 -31.70155 -30.29128 -27.65681 -27.34777 -27.21538 -26.90121 -24.62166 -23.23685 -21.46278 -20.25929 -19.00214 -18.12248 -16.94317 -16.80598 -15.57674 -15.19883 -14.93739 -14.40380 -14.30587 -13.94052 -13.90362 -13.67361 -13.10217 -12.82947 -12.61572 -12.41592 -12.26585 -12.23334 -12.12835 -11.79898 -11.59956 -11.46129 -11.25049 -11.15999 -11.03294 -10.99856 -10.77381 -10.71481 -10.52222 -10.14373 -9.72745 -9.46624 -9.33642 -8.79251 -8.46254 -6.82028 -6.15146 -4.14087 1.21022 2.49671 3.14974 3.25781 3.28268 3.29505 4.02079 4.06991 4.30667 4.50321 4.71898 4.87110 4.91104 5.07632 5.13162 5.16394 5.22064 5.36333 5.46287 5.62220 5.62417 5.65236 5.69351 5.70105 5.80469 5.85190 5.86575 5.90713 5.97260 5.99509 6.07293 6.13852 6.20866 6.33001 6.35752 6.46544 6.51120 6.58744 6.93070 7.17158 7.50845 7.60938 8.34603 8.39208 8.89158 8.99326 9.45597 10.97902 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.005371 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.976189 B = 5211.683638 C = 6128.362314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.159 4.159 4 C 0.404 3.596 5 N -0.556 5.556 6 C 0.143 3.857 7 C -0.013 4.013 8 C -0.137 4.137 9 C -0.123 4.123 10 C -0.141 4.141 11 C -0.192 4.192 12 C 0.361 3.639 13 N -0.546 5.546 14 C 0.156 3.844 15 C -0.513 4.513 16 H 0.078 0.922 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.266 1.266 23 N -0.653 5.653 24 H 0.416 0.584 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.143 0.857 42 H 0.040 0.960 43 H -0.024 1.024 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -11.327 -16.501 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.217 4.217 4 C 0.136 3.864 5 N -0.280 5.280 6 C 0.026 3.974 7 C -0.014 4.014 8 C -0.194 4.194 9 C -0.180 4.180 10 C -0.198 4.198 11 C -0.217 4.217 12 C 0.091 3.909 13 N -0.270 5.270 14 C 0.027 3.973 15 C -0.551 4.551 16 H 0.096 0.904 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.191 1.191 23 N -0.285 5.285 24 H 0.258 0.742 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.058 0.942 43 H -0.006 1.006 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.413 -11.825 -15.986 20.607 hybrid contribution 0.085 2.248 -0.009 2.249 sum 5.498 -9.577 -15.995 19.436 Atomic orbital electron populations 1.21842 0.92543 1.03068 1.02925 1.20261 0.97096 0.95415 0.93755 1.21983 1.01827 0.94696 1.03206 1.22898 0.87838 0.88550 0.87143 1.67756 1.23743 1.04930 1.31573 1.20368 0.93431 0.95079 0.88513 1.19377 0.95790 0.89053 0.97177 1.21880 0.97901 0.98805 1.00841 1.21633 1.02739 0.99601 0.94041 1.21953 0.95641 1.01368 1.00853 1.21170 1.09392 0.91786 0.99388 1.20267 0.94973 0.93298 0.82319 1.73114 1.25044 1.11764 1.17076 1.20030 0.98243 0.84610 0.94413 1.21026 1.09726 0.93789 1.30561 0.90420 1.24946 0.94877 0.98457 0.94942 1.69893 1.24833 1.20066 1.38571 0.86886 0.81146 0.82395 0.79593 1.20143 1.20711 1.19052 1.44354 1.59204 1.15419 1.09500 0.74166 0.92002 0.91174 0.91593 0.87304 0.90632 0.92162 0.91841 0.92464 0.92208 0.92186 0.92778 0.93415 0.91692 0.91915 0.92199 0.92537 0.83959 0.94187 1.00626 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 2 C -0.04 -0.49 3.28 -91.77 -0.30 -0.79 16 3 C -0.16 -1.64 8.75 37.16 0.32 -1.32 16 4 C 0.40 6.02 6.64 -154.93 -1.03 4.99 16 5 N -0.56 -8.37 8.95 -6.81 -0.06 -8.43 16 6 C 0.14 2.18 5.54 -82.67 -0.46 1.72 16 7 C -0.01 -0.16 0.87 -155.66 -0.14 -0.29 16 8 C -0.14 -1.52 8.40 37.16 0.31 -1.20 16 9 C -0.12 -1.32 7.82 37.16 0.29 -1.03 16 10 C -0.14 -1.50 8.08 37.16 0.30 -1.20 16 11 C -0.19 -3.37 9.04 -39.07 -0.35 -3.72 16 12 C 0.36 7.43 7.50 -155.64 -1.17 6.26 16 13 N -0.55 -13.30 10.57 -61.24 -0.65 -13.95 16 14 C 0.16 4.02 5.11 -5.19 -0.03 3.99 16 15 C -0.51 -15.27 9.94 -34.44 -0.34 -15.61 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 23 N -0.65 -11.67 5.07 -9.29 -0.05 -11.72 16 24 H 0.42 7.54 4.43 -40.82 -0.18 7.36 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.72 6.67 -51.93 -0.35 0.37 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 38 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.14 2.37 6.72 -52.48 -0.35 2.02 16 42 H 0.04 1.06 7.20 -51.93 -0.37 0.69 16 43 H -0.02 -0.56 5.02 -51.93 -0.26 -0.82 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -33.14 349.13 -9.08 -42.22 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.35 Total: 4.39 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.34 Total: -7.43 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.02 Total: -60.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.14 -9.08 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362667708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.213 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds