Wall clock time and date at job start Mon Mar 30 2020 20:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47188 * 299.99563 * 3 2 1 6 6 H 1.48501 * 109.47262 * 60.00068 * 3 2 1 7 7 C 1.37879 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99641 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47312 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47099 * 300.00044 * 11 10 9 13 13 N 1.46896 * 109.47069 * 179.97438 * 12 11 10 14 14 C 1.48669 * 111.04069 * 57.57973 * 13 12 11 15 15 C 1.55121 * 103.35357 * 159.21795 * 14 13 12 16 16 C 1.53806 * 102.71685 * 323.26436 * 15 14 13 17 17 C 1.53466 * 110.58842 * 141.82592 * 16 15 14 18 18 C 1.55086 * 103.98724 * 97.94137 * 17 16 15 19 19 C 1.54961 * 102.85259 * 37.24460 * 18 17 16 20 20 C 1.53082 * 110.77909 * 260.84924 * 16 15 14 21 21 C 1.48136 * 110.99852 * 175.00296 * 13 12 11 22 22 C 1.53002 * 109.47075 * 59.99810 * 12 11 10 23 23 C 1.52997 * 109.47291 * 299.99644 * 9 7 2 24 24 H 0.96994 * 120.00081 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47740 * 60.00303 * 9 7 2 26 26 H 1.09000 * 109.47312 * 60.00139 * 10 9 7 27 27 H 1.09003 * 109.47400 * 300.00067 * 10 9 7 28 28 H 1.08994 * 109.47151 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.46796 * 59.99851 * 11 10 9 30 30 H 1.08997 * 109.47266 * 300.00540 * 12 11 10 31 31 H 1.08998 * 110.61705 * 40.75984 * 14 13 12 32 32 H 1.09006 * 110.65603 * 277.69663 * 14 13 12 33 33 H 1.08996 * 110.76093 * 204.95489 * 15 14 13 34 34 H 1.09000 * 110.75801 * 81.56968 * 15 14 13 35 35 H 1.09005 * 110.52017 * 216.56740 * 17 16 15 36 36 H 1.08992 * 110.52538 * 339.31493 * 17 16 15 37 37 H 1.08999 * 110.73431 * 278.90100 * 18 17 16 38 38 H 1.09000 * 110.88548 * 155.65217 * 18 17 16 39 39 H 1.09011 * 110.47564 * 203.81896 * 19 18 17 40 40 H 1.08998 * 110.59998 * 81.24421 * 19 18 17 41 41 H 1.08998 * 110.09576 * 358.06747 * 20 16 15 42 42 H 1.09003 * 110.09198 * 119.66626 * 20 16 15 43 43 H 1.09002 * 110.00627 * 94.98823 * 21 13 12 44 44 H 1.08996 * 110.00122 * 333.67877 * 21 13 12 45 45 H 1.09000 * 109.47312 * 59.99892 * 22 12 11 46 46 H 1.09003 * 109.47400 * 179.97438 * 22 12 11 47 47 H 1.09000 * 109.47139 * 300.00005 * 23 9 7 48 48 H 1.08994 * 109.47069 * 60.00419 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 0.6012 -5.0678 1.2507 13 7 -0.1337 -6.3398 1.2510 14 6 0.7997 -7.4955 1.1921 15 6 -0.0527 -8.6724 1.7348 16 6 -0.8929 -8.0027 2.8353 17 6 -2.3176 -8.5731 2.8491 18 6 -2.2847 -9.6365 3.9775 19 6 -1.3695 -8.9809 5.0424 20 6 -0.2827 -8.2584 4.2158 21 6 -0.9049 -6.5069 2.5047 22 6 -0.3931 -3.9049 1.2507 23 6 0.3711 -2.5799 1.2495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 2.8720 -3.6043 0.8905 27 1 2.8721 -3.6043 -0.8895 28 1 2.1887 -5.8155 0.0016 29 1 0.8534 -5.0451 -0.8886 30 1 1.2281 -5.0097 2.1405 31 1 1.6660 -7.3221 1.8304 32 1 1.1100 -7.6872 0.1649 33 1 0.5852 -9.4500 2.1549 34 1 -0.6939 -9.0781 0.9522 35 1 -3.0401 -7.7909 3.0819 36 1 -2.5520 -9.0388 1.8919 37 1 -1.8504 -10.5689 3.6166 38 1 -3.2833 -9.8076 4.3795 39 1 -0.9203 -9.7424 5.6801 40 1 -1.9312 -8.2651 5.6425 41 1 0.6002 -8.8910 4.1236 42 1 -0.0188 -7.3128 4.6895 43 1 -1.9298 -6.1652 2.3604 44 1 -0.4341 -5.9432 3.3100 45 1 -1.0200 -3.9629 0.3610 46 1 -1.0198 -3.9626 2.1407 47 1 0.9974 -2.5220 2.1396 48 1 -0.3373 -1.7515 1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:25 Heat of formation + Delta-G solvation = -31.182393 kcal Electronic energy + Delta-G solvation = -22710.085705 eV Core-core repulsion = 19762.781383 eV Total energy + Delta-G solvation = -2947.304323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21965 -37.85151 -35.51480 -32.74681 -30.87673 -29.98208 -28.93740 -28.65155 -27.93217 -24.59749 -23.25025 -22.08084 -21.09951 -20.91744 -19.93184 -18.75922 -18.67967 -16.30180 -15.80748 -15.50611 -15.21437 -14.63991 -14.49732 -14.15267 -13.49281 -13.29540 -13.07321 -12.72967 -12.61299 -12.34110 -12.19495 -12.00999 -11.68791 -11.44949 -11.25339 -11.19448 -11.00766 -10.98378 -10.69339 -10.63973 -10.61466 -10.47926 -10.40335 -10.32951 -10.19759 -10.07804 -9.71147 -9.28618 -8.80083 -8.57978 -8.24358 -8.06016 -5.92306 -3.98251 3.32279 3.40360 3.44305 4.20570 4.38551 4.42421 4.47813 4.51278 4.99222 5.01806 5.18178 5.26321 5.35575 5.36969 5.44741 5.50978 5.53413 5.55837 5.68099 5.71495 5.76558 5.80968 5.91615 5.93192 5.97253 5.99860 6.04658 6.11234 6.16849 6.22275 6.26893 6.30383 6.41629 6.45838 6.51706 6.63792 6.75601 6.83688 7.02998 7.19261 7.23713 7.32932 7.49787 7.62762 7.81798 8.09948 8.23066 8.54198 9.06358 9.66044 11.13169 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.003593 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.235312 B = 7790.762504 C = 8103.695115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.106 4.106 12 C 0.083 3.917 13 N -0.514 5.514 14 C 0.036 3.964 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.114 4.114 21 C 0.050 3.950 22 C -0.105 4.105 23 C -0.108 4.108 24 H 0.258 0.742 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.029 0.971 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 -18.712 7.270 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.025 4.025 13 N -0.238 5.238 14 C -0.092 4.092 15 C -0.148 4.148 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.078 4.078 22 C -0.143 4.143 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.483 -18.555 6.812 20.070 hybrid contribution 1.051 1.025 0.781 1.663 sum -2.432 -17.529 7.594 19.258 Atomic orbital electron populations 1.69889 1.05808 1.26082 1.51144 1.24970 0.94826 0.98937 0.95323 0.86611 0.80181 0.84148 0.77493 1.19890 1.21111 1.21140 1.21289 0.92872 0.90857 1.49943 0.92853 1.18648 0.92595 0.91387 0.94324 1.21621 0.98600 0.94402 0.99915 1.21601 0.97507 0.97967 0.97347 1.21894 0.94507 0.88731 0.97346 1.64940 1.22726 1.02019 1.34095 1.23235 0.94476 0.90746 1.00782 1.22638 0.97915 0.96885 0.97396 1.21483 0.95682 0.95332 0.94954 1.22417 0.95500 0.97933 0.98693 1.22541 0.99334 0.98277 0.96099 1.22407 0.97017 0.99227 0.97528 1.22314 0.97959 1.00529 0.94389 1.22978 0.99638 0.93832 0.91336 1.21631 0.97195 0.95059 1.00398 1.21594 0.99556 0.94863 0.98588 0.93202 0.95625 0.93755 0.93396 0.93904 0.91879 0.94919 0.94216 0.90325 0.91472 0.90860 0.91400 0.91373 0.91745 0.91867 0.92049 0.91719 0.91762 0.91732 0.90525 0.93785 0.92169 0.94285 0.95202 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.23 2.10 -91.78 -0.19 1.04 16 10 C -0.11 -2.28 5.14 -26.73 -0.14 -2.42 16 11 C -0.11 -1.95 5.00 -26.73 -0.13 -2.08 16 12 C 0.08 1.48 1.65 -67.71 -0.11 1.37 16 13 N -0.51 -7.92 5.12 -222.58 -1.14 -9.06 16 14 C 0.04 0.47 5.32 -1.72 -0.01 0.46 16 15 C -0.11 -1.20 6.16 -25.19 -0.16 -1.35 16 16 C -0.07 -0.81 0.82 -153.71 -0.13 -0.93 16 17 C -0.11 -1.05 5.88 -25.39 -0.15 -1.20 16 18 C -0.12 -1.04 6.92 -24.59 -0.17 -1.21 16 19 C -0.12 -1.07 6.85 -24.92 -0.17 -1.24 16 20 C -0.11 -1.14 6.15 -25.91 -0.16 -1.30 16 21 C 0.05 0.69 4.89 -3.04 -0.01 0.67 16 22 C -0.10 -2.10 5.19 -26.75 -0.14 -2.24 16 23 C -0.11 -2.57 4.98 -26.76 -0.13 -2.70 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.61 7.96 -51.93 -0.41 0.19 16 31 H 0.04 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 33 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16 34 H 0.07 0.78 7.42 -51.93 -0.39 0.40 16 35 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 36 H 0.07 0.66 7.39 -51.93 -0.38 0.27 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.61 7.25 -51.93 -0.38 0.24 16 42 H 0.06 0.69 7.14 -51.93 -0.37 0.32 16 43 H 0.08 1.08 7.35 -51.93 -0.38 0.69 16 44 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.04 0.73 7.35 -51.93 -0.38 0.35 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -28.01 347.69 -11.55 -39.56 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -9.07 Total: -1.11 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.19 Total: -26.07 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: -0.51 Total: -34.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.01 -11.55 -39.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.382 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds