Wall clock time and date at job start Mon Mar 30 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46596 * 2 1 4 4 N 1.46499 * 109.46978 * 120.00137 * 2 1 3 5 5 C 1.46511 * 119.99719 * 305.33058 * 4 2 1 6 6 C 1.38993 * 120.00042 * 125.33270 * 4 2 1 7 7 C 1.39138 * 119.70709 * 11.20879 * 6 4 2 8 8 C 1.38295 * 119.09690 * 180.02562 * 7 6 4 9 9 C 1.38886 * 118.50776 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.33465 * 180.02562 * 9 8 7 11 11 N 1.46907 * 109.47023 * 90.00393 * 10 9 8 12 12 C 1.46894 * 110.99795 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47621 * 324.99796 * 12 11 10 14 14 C 1.53001 * 109.47310 * 85.00141 * 12 11 10 15 15 C 1.50706 * 109.47102 * 204.99918 * 12 11 10 16 16 H 1.07998 * 119.99255 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00167 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99835 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47050 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47319 * 299.99997 * 19 17 15 22 22 H 1.48495 * 109.47105 * 59.99831 * 19 17 15 23 23 C 1.38025 * 119.32800 * 0.27629 * 9 8 7 24 24 N 1.31973 * 120.85545 * 359.45069 * 23 9 8 25 25 H 1.09000 * 109.47331 * 299.99721 * 1 2 3 26 26 H 1.09001 * 109.47015 * 60.00548 * 1 2 3 27 27 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46859 * 239.99675 * 2 1 3 29 29 H 1.08998 * 109.47499 * 299.99455 * 3 2 1 30 30 H 1.09000 * 109.47053 * 60.00109 * 3 2 1 31 31 H 1.09002 * 109.46666 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46757 * 270.00069 * 5 4 2 33 33 H 1.08997 * 109.46911 * 30.00277 * 5 4 2 34 34 H 1.08999 * 109.46583 * 150.00591 * 5 4 2 35 35 H 1.07994 * 120.45068 * 0.02562 * 7 6 4 36 36 H 1.08003 * 120.74807 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47239 * 330.00170 * 10 9 8 38 38 H 1.09004 * 109.46981 * 209.99968 * 10 9 8 39 39 H 1.00900 * 110.99630 * 303.94856 * 11 10 9 40 40 H 1.08996 * 109.47454 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47209 * 299.99908 * 14 12 11 42 42 H 1.09001 * 109.47423 * 59.99251 * 14 12 11 43 43 H 0.96997 * 119.99914 * 179.97438 * 18 17 15 44 44 H 1.07999 * 119.56736 * 179.70275 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5707 -0.2618 2.5236 6 6 2.9064 -1.7527 1.0716 7 6 3.5086 -2.0076 -0.1565 8 6 4.3896 -3.0679 -0.2663 9 6 4.6406 -3.8406 0.8601 10 6 5.5939 -5.0055 0.7871 11 7 6.9530 -4.5466 1.1042 12 6 7.9115 -5.6581 1.0432 13 1 7.4304 -6.5722 1.3908 14 6 8.3826 -5.8467 -0.4002 15 6 9.0961 -5.3486 1.9219 16 1 9.1333 -4.4189 2.4703 17 6 10.1328 -6.2517 2.0248 18 7 10.0881 -7.3831 1.3557 19 14 11.6014 -5.8677 3.1133 20 1 12.5709 -6.9908 3.0508 21 1 12.2565 -4.6220 2.6395 22 1 11.1447 -5.6847 4.5144 23 6 4.0040 -3.5340 2.0458 24 7 3.1717 -2.5127 2.1228 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 2.2502 0.4989 2.9079 33 1 0.5650 0.1522 2.4517 34 1 1.5641 -1.1175 3.1987 35 1 3.2909 -1.3859 -1.0123 36 1 4.8724 -3.2895 -1.2067 37 1 5.5776 -5.4258 -0.2185 38 1 5.2913 -5.7681 1.5047 39 1 7.2322 -3.7939 0.4929 40 1 9.0941 -6.6711 -0.4453 41 1 7.5258 -6.0706 -1.0357 42 1 8.8637 -4.9325 -0.7478 43 1 10.8176 -8.0183 1.4278 44 1 4.1926 -4.1353 2.9229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:32 Heat of formation + Delta-G solvation = 43.117132 kcal Electronic energy + Delta-G solvation = -21177.791827 eV Core-core repulsion = 18130.169030 eV Total energy + Delta-G solvation = -3047.622797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23837 -37.75729 -35.95496 -33.41066 -32.21199 -31.83539 -30.49614 -28.11332 -27.50816 -26.41054 -25.13691 -24.20018 -22.82556 -21.69158 -20.13484 -19.94365 -17.79643 -16.50901 -16.35424 -15.15439 -15.04735 -14.95583 -14.67179 -14.59064 -13.97845 -13.62442 -13.22806 -13.09661 -13.09295 -12.85759 -12.81718 -12.43664 -12.32269 -12.00350 -11.70110 -11.64878 -11.57396 -11.21007 -11.01484 -10.83135 -10.76201 -10.44824 -10.11207 -9.98120 -9.62288 -9.50554 -9.17904 -8.95861 -8.32525 -7.41506 -7.14981 -5.94905 -3.98068 1.51699 1.67301 2.87426 3.37474 3.40926 3.44931 4.11135 4.42072 4.48341 4.74128 4.78031 4.91739 4.95341 5.18926 5.24262 5.28042 5.36456 5.37756 5.40507 5.42390 5.48664 5.55504 5.60153 5.65494 5.77855 5.83428 5.90229 5.93691 6.15066 6.27557 6.34510 6.64189 6.70952 6.83418 6.87216 7.03332 7.12674 7.39674 7.46972 7.77048 7.92326 8.30945 8.35757 8.58117 8.65699 9.09227 9.67197 11.12004 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.003055 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.928814 B = 9163.290666 C = 9405.771138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 C -0.164 4.164 4 N -0.614 5.614 5 C 0.099 3.901 6 C 0.392 3.608 7 C -0.241 4.241 8 C -0.033 4.033 9 C -0.173 4.173 10 C 0.108 3.892 11 N -0.679 5.679 12 C 0.211 3.789 13 H 0.034 0.966 14 C -0.169 4.169 15 C -0.494 4.494 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.289 1.289 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.165 3.835 24 N -0.542 5.542 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.325 0.675 40 H 0.089 0.911 41 H 0.005 0.995 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 13.751 -4.479 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 C -0.223 4.223 4 N -0.329 5.329 5 C -0.044 4.044 6 C 0.159 3.841 7 C -0.265 4.265 8 C -0.059 4.059 9 C -0.178 4.178 10 C -0.022 4.022 11 N -0.308 5.308 12 C 0.103 3.897 13 H 0.052 0.948 14 C -0.229 4.229 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.203 1.203 23 C 0.007 3.993 24 N -0.258 5.258 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.024 0.976 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.119 13.839 -2.993 23.791 hybrid contribution 1.377 -0.136 -1.256 1.869 sum -17.741 13.703 -4.248 22.816 Atomic orbital electron populations 1.22191 0.95173 1.02497 1.02315 1.21031 0.93877 0.92932 0.88064 1.22202 1.01956 0.95957 1.02149 1.46257 1.47960 1.32667 1.06053 1.21479 0.98266 1.00546 0.84134 1.18277 0.88832 0.87299 0.89705 1.21328 1.04210 1.03071 0.97888 1.21238 0.93936 0.92407 0.98338 1.20731 1.01810 1.00917 0.94346 1.20689 0.89512 0.93081 0.98963 1.60877 1.00195 1.12332 1.57438 1.19186 0.89867 0.88634 0.91982 0.94797 1.22438 0.99742 1.02266 0.98416 1.21137 1.02177 1.04153 1.25853 0.92004 1.24947 0.98413 0.95116 0.96072 1.69873 1.32858 1.08936 1.42205 0.86567 0.82155 0.77576 0.81115 1.21498 1.20418 1.20268 1.22325 0.89066 0.91128 0.96756 1.67171 1.20219 1.07689 1.30769 0.92129 0.91463 0.92193 0.89138 0.91654 0.92333 0.92117 0.94008 0.92209 0.90239 0.85636 0.85478 0.95648 0.90911 0.85896 0.89252 0.97636 0.95402 0.93050 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.06 37.16 0.34 -0.78 16 2 C 0.15 1.22 3.10 -67.93 -0.21 1.01 16 3 C -0.16 -1.20 9.27 37.16 0.34 -0.86 16 4 N -0.61 -6.93 2.88 -174.07 -0.50 -7.44 16 5 C 0.10 1.00 9.82 59.85 0.59 1.58 16 6 C 0.39 5.53 7.33 -155.03 -1.14 4.39 16 7 C -0.24 -3.16 9.24 -39.23 -0.36 -3.52 16 8 C -0.03 -0.46 9.85 -39.32 -0.39 -0.85 16 9 C -0.17 -2.76 5.41 -104.46 -0.57 -3.33 16 10 C 0.11 1.93 5.63 -4.97 -0.03 1.90 16 11 N -0.68 -14.53 6.22 -109.22 -0.68 -15.21 16 12 C 0.21 5.31 2.57 -68.86 -0.18 5.13 16 13 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 14 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 15 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 18 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 19 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.16 2.63 10.85 -17.57 -0.19 2.43 16 24 N -0.54 -8.52 9.08 -12.44 -0.11 -8.63 16 25 H 0.06 0.39 6.51 -51.93 -0.34 0.05 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.75 5.51 -51.93 -0.29 0.47 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 7.81 -51.93 -0.41 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.47 6.16 -51.93 -0.32 0.15 16 34 H 0.08 0.91 7.24 -51.93 -0.38 0.54 16 35 H 0.13 1.34 5.98 -52.49 -0.31 1.02 16 36 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.03 0.45 7.39 -51.93 -0.38 0.07 16 38 H 0.07 1.32 8.00 -51.93 -0.42 0.90 16 39 H 0.32 6.73 8.46 -39.29 -0.33 6.40 16 40 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 41 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 42 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -30.04 351.04 -9.46 -39.49 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.21 Total: 4.33 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.86 Total: -9.32 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.67 Total: -56.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.04 -9.46 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.610 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds