Wall clock time and date at job start Mon Mar 30 2020 20:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09000 * 115.55459 * 330.72406 * 3 2 1 5 5 C 1.53005 * 117.49642 * 116.39703 * 3 2 1 6 6 C 1.52993 * 60.00242 * 107.48441 * 5 3 2 7 7 H 1.08997 * 117.50151 * 252.50859 * 6 5 3 8 8 N 1.46501 * 117.49756 * 107.48886 * 6 5 3 9 9 C 1.36935 * 120.00317 * 136.38006 * 8 6 5 10 10 H 1.08009 * 119.99681 * 359.97438 * 9 8 6 11 11 C 1.38811 * 120.00461 * 180.02562 * 9 8 6 12 12 N 1.31620 * 120.00044 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00145 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46791 * 90.00102 * 13 11 9 15 15 H 1.48500 * 109.46944 * 210.00289 * 13 11 9 16 16 H 1.48496 * 109.46818 * 330.00003 * 13 11 9 17 17 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 18 18 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 20 20 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 21 21 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 22 22 H 1.08998 * 117.49609 * 214.98279 * 5 3 2 23 23 H 1.08998 * 117.49722 * 359.96619 * 5 3 2 24 24 H 0.97006 * 120.00052 * 316.37892 * 8 6 5 25 25 H 0.96995 * 120.00694 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3879 2.1717 -0.4809 5 6 2.8443 1.9075 1.2157 6 6 3.5501 1.6580 -0.1185 7 1 4.1803 0.7721 -0.1966 8 7 4.0094 2.8286 -0.8701 9 6 5.2504 2.8270 -1.4490 10 1 5.8907 1.9627 -1.3512 11 6 5.6858 3.9364 -2.1607 12 7 4.9061 4.9902 -2.2787 13 14 7.3790 3.9344 -2.9498 14 1 7.2809 3.3968 -4.3305 15 1 7.9056 5.3221 -2.9950 16 1 8.2963 3.0826 -2.1509 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8933 -0.5139 0.8899 21 1 1.8934 -0.5138 -0.8900 22 1 2.7215 2.9426 1.5344 23 1 3.0096 1.1858 2.0157 24 1 3.4344 3.6050 -0.9577 25 1 5.2104 5.7656 -2.7756 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234095559.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:13 Heat of formation + Delta-G solvation = -0.435977 kcal Electronic energy + Delta-G solvation = -8149.410735 eV Core-core repulsion = 6548.655291 eV Total energy + Delta-G solvation = -1600.755444 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 155.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.92718 -35.50556 -33.12048 -31.21247 -25.98615 -24.51466 -22.08840 -21.28005 -19.23535 -16.99529 -15.85848 -15.79912 -15.15906 -14.66125 -13.61999 -13.43875 -13.01855 -12.85815 -12.79046 -12.20010 -12.05683 -11.99029 -11.90723 -11.77384 -10.71853 -10.58271 -8.87524 -8.01126 -5.30094 1.46895 1.49491 1.58341 2.52369 3.10372 3.47238 3.66241 4.13736 4.22037 4.37347 4.46036 4.59110 4.74542 4.93115 5.05228 5.18166 5.24728 5.35969 5.37306 5.47597 5.60046 6.20846 7.25390 7.99236 8.23030 9.22526 Molecular weight = 155.10amu Principal moments of inertia in cm(-1) A = 0.110581 B = 0.011517 C = 0.011397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 253.146805 B = 2430.533737 C = 2456.227399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.176 4.176 4 H 0.079 0.921 5 C -0.210 4.210 6 C 0.112 3.888 7 H 0.107 0.893 8 N -0.710 5.710 9 C -0.254 4.254 10 H 0.083 0.917 11 C -0.076 4.076 12 N -0.972 5.972 13 Si 0.983 3.017 14 H -0.284 1.284 15 H -0.294 1.294 16 H -0.266 1.266 17 H 0.046 0.954 18 H 0.069 0.931 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.373 0.627 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 -8.847 4.337 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.197 4.197 4 H 0.097 0.903 5 C -0.251 4.251 6 C 0.001 3.999 7 H 0.125 0.875 8 N -0.344 5.344 9 C -0.385 4.385 10 H 0.101 0.899 11 C -0.268 4.268 12 N -0.622 5.622 13 Si 0.811 3.189 14 H -0.211 1.211 15 H -0.221 1.221 16 H -0.190 1.190 17 H 0.065 0.935 18 H 0.088 0.912 19 H 0.074 0.926 20 H 0.091 0.909 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.126 0.874 24 H 0.205 0.795 25 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.450 -8.883 4.254 10.807 hybrid contribution 0.479 0.856 -0.485 1.094 sum -3.971 -8.027 3.769 9.716 Atomic orbital electron populations 1.21721 0.94704 1.02133 1.01570 1.21043 0.96543 0.92538 1.01958 1.22911 0.95361 0.98640 1.02781 0.90312 1.23648 1.07306 1.01156 0.92991 1.21329 0.92555 0.91444 0.94619 0.87549 1.42170 1.16707 1.15082 1.60490 1.19763 0.93054 1.00397 1.25275 0.89940 1.25708 1.02821 0.96040 1.02216 1.69835 1.38738 1.06220 1.47407 0.85007 0.78976 0.76598 0.78361 1.21067 1.22054 1.19045 0.93518 0.91168 0.92602 0.90881 0.92202 0.91215 0.87363 0.79520 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.87 71.98 0.71 -2.57 15 2 C -0.08 -2.25 6.22 30.60 0.19 -2.06 15 3 C -0.18 -6.16 5.66 -10.79 -0.06 -6.22 15 4 H 0.08 3.00 8.07 -2.39 -0.02 2.98 15 5 C -0.21 -7.50 10.10 30.59 0.31 -7.19 15 6 C 0.11 4.72 6.34 44.99 0.29 5.00 15 7 H 0.11 4.27 8.12 -2.39 -0.02 4.25 15 8 N -0.71 -38.06 5.61 -322.94 -1.81 -39.87 15 9 C -0.25 -14.52 9.98 84.03 0.84 -13.68 15 10 H 0.08 4.46 7.82 -2.91 -0.02 4.44 15 11 C -0.08 -4.43 5.50 84.86 0.47 -3.96 15 12 N -0.97 -60.78 13.06 21.65 0.28 -60.50 15 13 Si 0.98 46.39 29.55 68.60 2.03 48.41 15 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 15 H -0.29 -13.93 7.11 99.48 0.71 -13.22 15 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 17 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 18 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.05 1.23 8.14 -2.39 -0.02 1.21 15 20 H 0.07 1.75 7.87 -2.39 -0.02 1.73 15 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.11 3.22 8.03 -2.39 -0.02 3.20 15 24 H 0.37 21.46 8.02 -92.70 -0.74 20.71 15 25 H 0.25 15.26 8.31 -92.71 -0.77 14.49 15 Total: -1.00 -63.29 220.18 3.65 -59.65 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.41 Total: 22.99 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.74 Total: -30.68 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -1.53 Total: -100.37 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -63.29 3.65 -59.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234095559.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.212 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds