Wall clock time and date at job start Mon Mar 30 2020 20:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.43215 * 302.53324 * 9 7 2 11 11 C 1.54626 * 110.48638 * 179.97438 * 9 7 2 12 12 C 1.54480 * 101.76617 * 216.52340 * 11 9 7 13 13 N 1.46762 * 105.47500 * 25.40945 * 12 11 9 14 14 C 1.34425 * 111.29894 * 342.99105 * 13 12 11 15 15 O 1.21277 * 124.93905 * 180.44219 * 14 13 12 16 16 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 17 17 H 1.09005 * 110.97153 * 334.63643 * 11 9 7 18 18 H 1.09001 * 110.97429 * 98.36721 * 11 9 7 19 19 H 1.08995 * 110.25089 * 144.41708 * 12 11 9 20 20 H 1.09001 * 110.24520 * 266.32758 * 12 11 9 21 21 H 0.96996 * 124.35260 * 162.98363 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5847 -2.5538 0.8615 11 6 2.2349 -3.6920 0.0005 12 6 1.4977 -4.7083 -0.8995 13 7 0.6322 -3.9044 -1.7705 14 6 0.4719 -2.6607 -1.2861 15 8 -0.2001 -1.7945 -1.8047 16 1 -0.4850 -0.8401 -0.0004 17 1 3.1926 -3.4078 -0.4355 18 1 2.3688 -4.0873 1.0075 19 1 2.2140 -5.2726 -1.4966 20 1 0.8982 -5.3855 -0.2912 21 1 0.2278 -4.2287 -2.5903 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595625.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:37 Heat of formation + Delta-G solvation = -68.866183 kcal Electronic energy + Delta-G solvation = -8518.906373 eV Core-core repulsion = 6779.350478 eV Total energy + Delta-G solvation = -1739.555895 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 155.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.93028 -37.05350 -35.16205 -31.66537 -28.55045 -25.72589 -22.56102 -21.41943 -18.71516 -17.97677 -16.98280 -15.89091 -15.56672 -14.88290 -14.40455 -14.15432 -13.57310 -12.88336 -12.59925 -12.36834 -11.87845 -11.67571 -10.73204 -10.64518 -10.43755 -9.86933 -8.50912 -6.29138 1.52209 1.63005 1.79185 1.96086 2.62570 2.70014 3.30151 3.94406 4.09721 4.26351 4.54593 4.79212 4.90196 5.20945 5.40216 5.93097 6.06001 6.24456 6.38431 6.66007 7.53696 7.65859 8.86828 Molecular weight = 155.07amu Principal moments of inertia in cm(-1) A = 0.087248 B = 0.021390 C = 0.018648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.845597 B = 1308.682941 C = 1501.158072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.033 4.033 3 Si 1.119 2.881 4 H -0.285 1.285 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.623 4.623 8 H 0.058 0.942 9 C -0.013 4.013 10 H 0.029 0.971 11 C -0.114 4.114 12 C 0.109 3.891 13 N -0.738 5.738 14 C 0.494 3.506 15 O -0.577 6.577 16 H 0.266 0.734 17 H 0.070 0.930 18 H 0.097 0.903 19 H 0.104 0.896 20 H 0.086 0.914 21 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -8.907 -0.179 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.235 4.235 3 Si 0.940 3.060 4 H -0.212 1.212 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.661 4.661 8 H 0.076 0.924 9 C -0.035 4.035 10 H 0.046 0.954 11 C -0.151 4.151 12 C -0.014 4.014 13 N -0.395 5.395 14 C 0.283 3.717 15 O -0.455 6.455 16 H 0.077 0.923 17 H 0.089 0.911 18 H 0.115 0.885 19 H 0.122 0.878 20 H 0.104 0.896 21 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.896 -6.824 -0.322 8.404 hybrid contribution -0.390 -1.707 -0.498 1.821 sum 4.506 -8.531 -0.820 9.683 Atomic orbital electron populations 1.70665 1.08090 1.31574 1.44146 1.27351 0.96664 1.06912 0.92621 0.82949 0.74581 0.71322 0.77099 1.21168 1.20870 1.18375 1.22067 0.94128 0.91658 1.58219 0.92356 1.19671 0.95281 0.97419 0.91121 0.95354 1.22547 0.97875 0.93626 1.01081 1.22205 0.93279 0.93079 0.92865 1.46370 1.52871 1.12883 1.27395 1.22587 0.79080 0.81309 0.88767 1.90619 1.43110 1.45793 1.66020 0.92250 0.91116 0.88493 0.87801 0.89620 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.57 12.63 21.45 0.27 -60.30 14 2 C -0.03 -1.99 5.14 84.65 0.43 -1.56 14 3 Si 1.12 53.17 29.90 68.60 2.05 55.22 14 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 14 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 14 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 14 7 C -0.62 -36.11 8.51 25.60 0.22 -35.89 14 8 H 0.06 3.23 7.60 -2.91 -0.02 3.21 14 9 C -0.01 -0.68 2.48 -11.55 -0.03 -0.71 14 10 H 0.03 1.56 7.93 -2.38 -0.02 1.54 14 11 C -0.11 -4.05 6.68 31.65 0.21 -3.84 14 12 C 0.11 3.06 7.78 86.83 0.68 3.74 14 13 N -0.74 -27.51 6.24 -459.81 -2.87 -30.38 14 14 C 0.49 25.67 7.51 87.90 0.66 26.33 14 15 O -0.58 -36.08 14.91 -3.02 -0.05 -36.12 14 16 H 0.27 18.17 5.45 -92.71 -0.50 17.66 14 17 H 0.07 2.54 7.77 -2.38 -0.02 2.52 14 18 H 0.10 2.92 8.14 -2.39 -0.02 2.90 14 19 H 0.10 2.15 8.14 -2.39 -0.02 2.13 14 20 H 0.09 1.98 8.14 -2.39 -0.02 1.96 14 21 H 0.40 12.88 8.96 -92.71 -0.83 12.05 14 Total: -1.00 -77.15 185.25 2.25 -74.90 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.67 Total: 8.62 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 2.17 Total: -11.93 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -2.60 Total: -90.68 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.05 Total: -36.12 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 2.05 Total: 55.22 kcal Total: -77.15 2.25 -74.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595625.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.032 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds