Wall clock time and date at job start Mon Mar 30 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.35064 * 2 1 4 4 C 1.55019 * 110.36544 * 237.63338 * 2 1 3 5 5 C 1.54937 * 102.92732 * 219.06505 * 4 2 1 6 6 N 1.48529 * 103.22436 * 37.52265 * 5 4 2 7 7 C 1.47899 * 105.81970 * 320.79111 * 6 5 4 8 8 H 1.09002 * 109.91758 * 265.77683 * 7 6 5 9 9 C 1.50706 * 109.91469 * 144.68783 * 7 6 5 10 10 H 1.08005 * 119.99758 * 241.80359 * 9 7 6 11 11 C 1.37871 * 120.00102 * 61.80243 * 9 7 6 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 H 1.08996 * 109.47529 * 297.85815 * 1 2 3 18 18 H 1.09002 * 109.47277 * 57.86281 * 1 2 3 19 19 H 1.09003 * 109.46819 * 177.85835 * 1 2 3 20 20 H 1.09001 * 110.63304 * 100.74731 * 4 2 1 21 21 H 1.09007 * 110.81666 * 337.47020 * 4 2 1 22 22 H 1.09000 * 110.66910 * 279.08684 * 5 4 2 23 23 H 1.09006 * 110.81120 * 156.02397 * 5 4 2 24 24 H 1.00904 * 111.00035 * 81.30737 * 6 5 4 25 25 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0694 -0.7780 -1.2275 5 6 3.2892 -1.5373 -0.6479 6 7 2.8342 -1.9233 0.7123 7 6 2.0645 -0.7682 1.2229 8 1 2.7134 -0.1213 1.8133 9 6 0.9145 -1.2511 2.0687 10 1 -0.1014 -1.0309 1.7754 11 6 1.1591 -1.9741 3.2169 12 7 2.3961 -2.2419 3.5743 13 14 -0.2664 -2.5721 4.2656 14 1 0.2596 -3.3200 5.4357 15 1 -1.0571 -1.4068 4.7370 16 1 -1.1349 -3.4653 3.4575 17 1 -0.3634 0.4802 0.9085 18 1 -0.3634 0.5467 -0.8702 19 1 -0.3633 -1.0270 -0.0384 20 1 2.3814 -0.0888 -2.0122 21 1 1.3219 -1.4775 -1.6019 22 1 4.1587 -0.8824 -0.5913 23 1 3.5137 -2.4220 -1.2439 24 1 2.2617 -2.7536 0.6801 25 1 3.1363 -1.9311 3.0299 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259608222.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:44 Heat of formation + Delta-G solvation = -27.885748 kcal Electronic energy + Delta-G solvation = -8783.040880 eV Core-core repulsion = 7181.095125 eV Total energy + Delta-G solvation = -1601.945755 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 155.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70446 -34.61988 -32.79790 -29.92372 -26.49936 -25.66123 -22.40679 -20.86241 -18.43928 -16.82184 -16.28353 -15.59297 -14.91650 -14.68620 -14.12622 -13.33083 -13.21245 -12.60181 -12.41086 -12.07308 -11.95768 -11.78224 -11.53989 -11.41004 -10.47458 -10.29796 -9.15235 -8.42177 -6.23219 1.56327 1.63852 1.82406 2.64252 3.27613 3.76824 3.93373 4.05764 4.34935 4.55946 4.66546 4.75484 4.84768 4.94525 5.12892 5.26998 5.30490 5.40784 5.59594 6.00929 6.21397 6.51477 6.72053 6.95823 7.66020 8.95442 Molecular weight = 155.10amu Principal moments of inertia in cm(-1) A = 0.072927 B = 0.021289 C = 0.017819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.851607 B = 1314.890602 C = 1571.005286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 H 0.055 0.945 4 C -0.137 4.137 5 C 0.035 3.965 6 N -0.688 5.688 7 C 0.182 3.818 8 H -0.013 1.013 9 C -0.632 4.632 10 H 0.073 0.927 11 C -0.025 4.025 12 N -0.932 5.932 13 Si 1.111 2.889 14 H -0.291 1.291 15 H -0.275 1.275 16 H -0.271 1.271 17 H 0.044 0.956 18 H 0.055 0.945 19 H 0.045 0.955 20 H 0.083 0.917 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.326 0.674 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 1.760 -7.517 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 H 0.073 0.927 4 C -0.176 4.176 5 C -0.095 4.095 6 N -0.316 5.316 7 C 0.074 3.926 8 H 0.005 0.995 9 C -0.671 4.671 10 H 0.091 0.909 11 C -0.226 4.226 12 N -0.569 5.569 13 Si 0.935 3.065 14 H -0.217 1.217 15 H -0.201 1.201 16 H -0.196 1.196 17 H 0.063 0.937 18 H 0.074 0.926 19 H 0.064 0.936 20 H 0.101 0.899 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.141 0.859 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.084 1.060 -5.785 6.641 hybrid contribution -0.065 0.914 -1.632 1.872 sum -3.149 1.974 -7.418 8.297 Atomic orbital electron populations 1.21619 0.94521 1.00714 0.99912 1.22364 0.97019 0.98350 0.95667 0.92675 1.23148 0.98086 0.99330 0.97077 1.23146 0.97139 0.99268 0.89915 1.62950 1.41964 1.06469 1.20195 1.19890 0.91166 0.88922 0.92577 0.99519 1.22853 0.94365 1.39143 1.10704 0.90945 1.27142 1.02678 0.94723 0.98085 1.70725 1.00068 1.44437 1.41621 0.83004 0.72218 0.76542 0.74783 1.21686 1.20057 1.19619 0.93742 0.92649 0.93638 0.89887 0.91670 0.91682 0.90286 0.85870 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 7.59 71.98 0.55 -3.68 15 2 C -0.11 -4.69 3.61 -9.77 -0.04 -4.72 15 3 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 4 C -0.14 -4.72 6.62 31.95 0.21 -4.51 15 5 C 0.03 1.31 7.55 86.65 0.65 1.96 15 6 N -0.69 -33.27 6.15 -484.03 -2.98 -36.25 15 7 C 0.18 9.39 2.81 44.31 0.12 9.52 15 8 H -0.01 -0.77 7.99 -2.39 -0.02 -0.79 15 9 C -0.63 -34.83 7.50 25.60 0.19 -34.64 15 10 H 0.07 3.82 4.67 -2.91 -0.01 3.80 15 11 C -0.02 -1.40 5.40 84.65 0.46 -0.94 15 12 N -0.93 -58.06 13.53 21.45 0.29 -57.77 15 13 Si 1.11 50.40 29.90 68.60 2.05 52.45 15 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 17 H 0.04 1.81 7.01 -2.39 -0.02 1.79 15 18 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.04 1.82 7.20 -2.39 -0.02 1.80 15 20 H 0.08 2.36 8.14 -2.39 -0.02 2.35 15 21 H 0.06 2.16 7.86 -2.38 -0.02 2.14 15 22 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.08 2.56 8.14 -2.38 -0.02 2.54 15 24 H 0.33 16.38 8.39 -89.69 -0.75 15.63 15 25 H 0.27 17.47 6.48 -92.71 -0.60 16.86 15 Total: -1.00 -62.69 202.31 2.10 -60.59 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.58 Total: 18.00 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 2.15 Total: -37.02 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -2.69 Total: -94.02 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -62.69 2.10 -60.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608222.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.701 kcal (2) G-P(sol) polarization free energy of solvation -62.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds