Wall clock time and date at job start Mon Mar 30 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.62844 * 2 1 4 4 C 1.54314 * 110.70971 * 236.88952 * 2 1 3 5 5 N 1.47442 * 107.23795 * 219.33256 * 4 2 1 6 6 C 1.47841 * 108.56465 * 359.01283 * 5 4 2 7 7 C 1.55112 * 104.90851 * 23.96929 * 6 5 4 8 8 H 1.09005 * 110.92155 * 81.17103 * 7 6 5 9 9 C 1.50702 * 111.15082 * 205.04948 * 7 6 5 10 10 H 1.08002 * 119.99843 * 112.23548 * 9 7 6 11 11 C 1.37873 * 120.00013 * 292.24656 * 9 7 6 12 12 N 1.31515 * 120.00114 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00004 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47253 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47458 * 119.99587 * 13 11 9 16 16 H 1.48503 * 109.47065 * 239.99680 * 13 11 9 17 17 H 1.09002 * 109.47153 * 179.30145 * 1 2 3 18 18 H 1.09001 * 109.46832 * 59.30336 * 1 2 3 19 19 H 1.09004 * 109.47261 * 299.30317 * 1 2 3 20 20 H 1.08998 * 109.88796 * 338.74288 * 4 2 1 21 21 H 1.09005 * 109.88770 * 99.92719 * 4 2 1 22 22 H 1.00902 * 111.00035 * 236.74134 * 5 4 2 23 23 H 1.08999 * 110.37471 * 142.92572 * 6 5 4 24 24 H 1.09001 * 110.37712 * 265.15274 * 6 5 4 25 25 H 0.97001 * 120.00196 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0757 -0.7885 -1.2090 5 7 3.2490 -1.5489 -0.7412 6 6 3.4651 -1.2477 0.6900 7 6 2.0786 -0.7925 1.2157 8 1 1.4459 -1.6515 1.4395 9 6 2.2205 0.0995 2.4221 10 1 1.9511 1.1433 2.3566 11 6 2.6945 -0.4170 3.6093 12 7 3.0223 -1.6881 3.6892 13 14 2.8711 0.6888 5.1044 14 1 2.4391 2.0660 4.7554 15 1 2.0241 0.1686 6.2077 16 1 4.2910 0.7110 5.5387 17 1 -0.3633 -1.0276 -0.0125 18 1 -0.3633 0.5246 -0.8837 19 1 -0.3634 0.5030 0.8962 20 1 1.3133 -1.4737 -1.5795 21 1 2.3721 -0.0981 -1.9988 22 1 4.0675 -1.3224 -1.2860 23 1 3.7984 -2.1402 1.2195 24 1 4.1945 -0.4456 0.8031 25 1 3.3554 -2.0515 4.5246 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429098.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:38 Heat of formation + Delta-G solvation = -15.427533 kcal Electronic energy + Delta-G solvation = -8631.205577 eV Core-core repulsion = 7029.800050 eV Total energy + Delta-G solvation = -1601.405527 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 155.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.59653 -32.65498 -31.14169 -28.31449 -24.98829 -23.82508 -20.03964 -18.96563 -16.64570 -15.01402 -14.31228 -14.11101 -12.87731 -12.60188 -12.23787 -11.84966 -11.41954 -11.02739 -10.87840 -10.60141 -10.33376 -10.08143 -9.73423 -9.01039 -8.88018 -8.41549 -7.48923 -6.02027 -4.05193 3.29180 3.37307 3.41009 4.43085 5.27706 5.34430 5.66159 5.79827 6.07145 6.17741 6.44992 6.55560 6.67445 6.78206 6.94165 7.08105 7.21771 7.62573 7.75734 7.86556 8.01814 8.28063 8.46898 8.98736 9.59165 11.08020 Molecular weight = 155.10amu Principal moments of inertia in cm(-1) A = 0.073960 B = 0.018963 C = 0.016478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.494184 B = 1476.187129 C = 1698.835262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.117 4.117 3 H 0.061 0.939 4 C 0.052 3.948 5 N -0.696 5.696 6 C 0.057 3.943 7 C 0.055 3.945 8 H 0.040 0.960 9 C -0.513 4.513 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.890 3.110 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 H 0.048 0.952 18 H 0.035 0.965 19 H 0.056 0.944 20 H 0.060 0.940 21 H 0.031 0.969 22 H 0.318 0.682 23 H 0.077 0.923 24 H 0.024 0.976 25 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 2.586 -5.003 5.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.136 4.136 3 H 0.079 0.921 4 C -0.078 4.078 5 N -0.324 5.324 6 C -0.071 4.071 7 C 0.036 3.964 8 H 0.059 0.941 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.526 5.526 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 H 0.067 0.933 18 H 0.054 0.946 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.049 0.951 22 H 0.132 0.868 23 H 0.095 0.905 24 H 0.043 0.957 25 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.489 1.829 -4.768 5.319 hybrid contribution 0.590 1.466 0.827 1.784 sum -0.900 3.295 -3.941 5.215 Atomic orbital electron populations 1.21603 0.95879 1.00855 1.00189 1.22486 0.95204 0.99117 0.96816 0.92100 1.22617 0.94039 0.94711 0.96396 1.62035 1.06052 1.58441 1.05843 1.23027 1.00195 0.99273 0.84637 1.19823 0.91336 0.94658 0.90578 0.94144 1.21103 1.43537 0.95677 0.94838 0.92555 1.25015 0.95288 0.94971 0.98683 1.69978 1.43956 1.12271 1.26369 0.86568 0.77696 0.80921 0.83016 1.19816 1.20973 1.21046 0.93301 0.94614 0.92511 0.92143 0.95077 0.86800 0.90474 0.95740 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.13 37.16 0.34 -2.07 15 2 C -0.12 -2.50 2.97 -88.80 -0.26 -2.77 15 3 H 0.06 1.32 8.01 -51.93 -0.42 0.90 15 4 C 0.05 1.01 7.18 -2.84 -0.02 0.99 15 5 N -0.70 -14.58 7.39 -110.67 -0.82 -15.40 15 6 C 0.06 1.40 6.57 -2.19 -0.01 1.38 15 7 C 0.06 1.42 2.30 -89.52 -0.21 1.21 15 8 H 0.04 1.15 8.05 -51.93 -0.42 0.73 15 9 C -0.51 -14.25 8.50 -34.44 -0.29 -14.54 15 10 H 0.06 1.55 7.76 -52.49 -0.41 1.14 15 11 C 0.06 1.75 5.38 -17.82 -0.10 1.66 15 12 N -0.89 -25.88 12.56 55.43 0.70 -25.18 15 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 15 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H 0.05 0.91 8.12 -51.93 -0.42 0.48 15 18 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 20 H 0.06 1.13 7.80 -51.93 -0.41 0.73 15 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.32 5.82 8.91 -39.29 -0.35 5.47 15 23 H 0.08 2.07 7.76 -51.93 -0.40 1.67 15 24 H 0.02 0.60 8.03 -51.93 -0.42 0.19 15 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 210.03 15.07 3.17 3.17 Total: -1.00 -28.75 210.03 -6.17 -34.92 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.64 Total: 0.26 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.55 Total: -14.14 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.12 Total: -40.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -28.75 -6.17 -34.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429098.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.494 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds