Wall clock time and date at job start Mon Mar 30 2020 20:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 119.99866 * 2 1 4 4 H 1.48502 * 109.47465 * 270.00216 * 3 2 1 5 5 H 1.48500 * 109.47354 * 29.99857 * 3 2 1 6 6 H 1.48498 * 109.47336 * 150.00069 * 3 2 1 7 7 C 1.37880 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00089 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47019 * 180.02562 * 9 7 2 11 11 H 1.08990 * 110.83877 * 57.27138 * 10 9 7 12 12 C 1.54852 * 110.97538 * 181.02390 * 10 9 7 13 13 O 1.44277 * 101.19842 * 141.40431 * 12 10 9 14 14 C 1.34604 * 107.66406 * 335.35867 * 13 12 10 15 15 N 1.28632 * 114.12226 * 17.19814 * 14 13 12 16 16 H 0.96992 * 119.99791 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47240 * 60.00430 * 9 7 2 18 18 H 1.09001 * 109.47318 * 300.00029 * 9 7 2 19 19 H 1.09001 * 111.07759 * 23.42309 * 12 10 9 20 20 H 1.09001 * 111.07679 * 259.38271 * 12 10 9 21 21 H 1.08001 * 122.93491 * 197.18944 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 1 3.6313 -3.1858 -0.8565 12 6 5.5694 -2.6772 0.0253 13 8 5.8059 -3.7954 0.9058 14 6 4.7248 -3.9285 1.6965 15 7 3.6788 -3.3172 1.2641 16 1 -0.4849 0.8400 0.0004 17 1 3.8753 -0.6796 0.8895 18 1 3.8746 -0.6808 -0.8905 19 1 5.9790 -1.7569 0.4417 20 1 5.9727 -2.8691 -0.9690 21 1 4.7347 -4.4987 2.6136 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260700998.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:53 Heat of formation + Delta-G solvation = -13.518113 kcal Electronic energy + Delta-G solvation = -8198.871846 eV Core-core repulsion = 6461.716023 eV Total energy + Delta-G solvation = -1737.155823 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 155.069 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -40.53216 -34.10530 -32.39164 -30.77213 -27.49828 -23.02500 -21.63215 -19.96042 -16.96121 -16.34930 -15.80543 -14.64059 -14.19441 -13.11793 -12.69249 -12.24520 -11.75965 -11.62085 -11.33247 -10.50293 -10.16208 -9.75761 -9.51022 -9.16641 -8.60379 -8.50248 -5.98857 -3.95436 2.76631 3.30359 3.38373 3.40366 3.88420 4.46981 4.80536 5.19828 5.34407 5.40375 5.72674 5.97355 6.24119 6.44044 6.89719 7.01825 7.27585 7.77173 8.26354 8.60536 9.10551 9.61917 11.14967 Molecular weight = 155.07amu Principal moments of inertia in cm(-1) A = 0.094463 B = 0.016382 C = 0.014843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.341531 B = 1708.818944 C = 1885.957224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.064 3.936 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.036 3.964 11 H 0.094 0.906 12 C 0.015 3.985 13 O -0.365 6.365 14 C 0.240 3.760 15 N -0.497 5.497 16 H 0.262 0.738 17 H 0.019 0.981 18 H 0.021 0.979 19 H 0.078 0.922 20 H 0.101 0.899 21 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.505 -3.649 1.020 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.541 4.541 8 H 0.095 0.905 9 C -0.034 4.034 10 C -0.073 4.073 11 H 0.112 0.888 12 C -0.062 4.062 13 O -0.270 6.270 14 C -0.008 4.008 15 N -0.228 5.228 16 H 0.072 0.928 17 H 0.038 0.962 18 H 0.039 0.961 19 H 0.096 0.904 20 H 0.119 0.881 21 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.642 -3.430 1.122 10.295 hybrid contribution 0.964 1.011 -0.322 1.433 sum 10.605 -2.419 0.800 10.907 Atomic orbital electron populations 1.69909 1.06184 1.26668 1.51526 1.25010 0.94758 0.98887 0.94983 0.86832 0.80308 0.84042 0.78362 1.20317 1.21300 1.19321 1.20970 0.88650 0.94715 1.49745 0.90453 1.19528 0.98515 0.88865 0.96532 1.23713 0.90165 1.00030 0.93401 0.88839 1.24755 0.98755 0.88433 0.94242 1.86919 1.42510 1.49192 1.48348 1.27352 0.82368 0.95920 0.95166 1.74890 1.25782 1.12018 1.10120 0.92815 0.96233 0.96136 0.90419 0.88131 0.76970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.55 13.96 55.43 0.77 -27.77 14 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 14 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 14 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 14 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 14 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 14 7 C -0.50 -14.79 9.48 -34.44 -0.33 -15.12 14 8 H 0.08 2.50 7.99 -52.49 -0.42 2.08 14 9 C 0.00 0.07 3.74 -27.89 -0.10 -0.03 14 10 C 0.04 0.76 3.70 -66.35 -0.25 0.51 14 11 H 0.09 1.96 8.14 -51.93 -0.42 1.54 14 12 C 0.02 0.25 7.74 38.13 0.30 0.54 14 13 O -0.37 -6.01 11.17 -15.59 -0.17 -6.19 14 14 C 0.24 3.91 12.72 51.42 0.65 4.57 14 15 N -0.50 -10.51 11.24 -54.91 -0.62 -11.13 14 16 H 0.26 7.72 8.31 -40.82 -0.34 7.38 14 17 H 0.02 0.49 7.20 -51.93 -0.37 0.11 14 18 H 0.02 0.47 7.57 -51.93 -0.39 0.08 14 19 H 0.08 1.24 7.92 -51.93 -0.41 0.83 14 20 H 0.10 1.39 8.14 -51.93 -0.42 0.96 14 21 H 0.21 2.37 8.06 -52.49 -0.42 1.95 14 LS Contribution 190.77 15.07 2.87 2.87 Total: -1.00 -33.19 190.77 -3.67 -36.86 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.03 Total: -4.24 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.18 Total: -7.71 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.16 Total: -38.90 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.17 Total: -6.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -33.19 -3.67 -36.86 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260700998.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.338 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds