Wall clock time and date at job start Mon Mar 30 2020 20:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47130 * 240.00319 * 2 1 3 5 5 C 1.50702 * 109.47442 * 174.99913 * 4 2 1 6 6 H 1.08001 * 119.99438 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00096 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99930 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99900 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46843 * 60.00255 * 9 7 5 11 11 H 1.48496 * 109.47394 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47268 * 300.00657 * 9 7 5 13 13 N 1.46897 * 109.47274 * 119.99941 * 2 1 3 14 14 C 1.47961 * 110.99971 * 297.52019 * 13 2 1 15 15 C 1.53939 * 86.17696 * 137.58259 * 14 13 2 16 16 C 1.47961 * 110.99948 * 36.88237 * 13 2 1 17 17 H 1.09001 * 109.47248 * 49.96186 * 1 2 3 18 18 H 1.09001 * 109.47049 * 169.96494 * 1 2 3 19 19 H 1.08999 * 109.47173 * 289.96528 * 1 2 3 20 20 H 1.09000 * 109.46873 * 294.99593 * 4 2 1 21 21 H 1.09003 * 109.47454 * 54.99441 * 4 2 1 22 22 H 0.97002 * 119.99382 * 179.97438 * 8 7 5 23 23 H 1.08995 * 113.75731 * 23.26721 * 14 13 2 24 24 H 1.08999 * 113.75969 * 251.89629 * 14 13 2 25 25 H 1.09001 * 113.73263 * 90.64065 * 15 14 13 26 26 H 1.09000 * 113.73222 * 221.92065 * 15 14 13 27 27 H 1.08995 * 113.76155 * 108.09678 * 16 13 2 28 28 H 1.09007 * 113.85777 * 336.74682 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 3.5763 -1.8377 -3.2996 9 14 6.0920 -1.0610 -2.4370 10 1 6.6845 -1.6861 -1.2273 11 1 6.5870 -1.7610 -3.6495 12 1 6.4844 0.3700 -2.4973 13 7 2.0197 -0.6925 1.1994 14 6 1.5947 0.0121 2.4291 15 6 1.2878 -1.3843 2.9997 16 6 1.1547 -1.8445 1.5368 17 1 -0.3634 0.6611 -0.7868 18 1 -0.3633 -1.0120 -0.1791 19 1 -0.3633 0.3509 0.9659 20 1 1.7517 -1.7714 -1.2056 21 1 1.6053 -0.2617 -2.1370 22 1 4.0608 -2.2444 -4.0351 23 1 0.7108 0.6356 2.2948 24 1 2.4062 0.5277 2.9426 25 1 2.1274 -1.8368 3.5273 26 1 0.3551 -1.4333 3.5616 27 1 1.6147 -2.8123 1.3373 28 1 0.1417 -1.7659 1.1420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:48 Heat of formation + Delta-G solvation = 32.560351 kcal Electronic energy + Delta-G solvation = -9999.032133 eV Core-core repulsion = 8244.169898 eV Total energy + Delta-G solvation = -1754.862235 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.57541 -33.73017 -31.76934 -27.34755 -26.66776 -25.53395 -23.00580 -20.18269 -18.36704 -16.17130 -15.87681 -14.99606 -14.44949 -13.74387 -13.14042 -12.52806 -12.14269 -11.69659 -11.41256 -11.20222 -10.70616 -10.64832 -10.58429 -10.44813 -10.14843 -9.74660 -9.14819 -8.97888 -8.22680 -7.83636 -5.85218 -3.83141 3.43617 3.46632 3.50929 4.58214 4.61795 4.98352 5.28483 5.50742 5.63416 5.71782 5.85236 5.92788 5.95755 6.09781 6.15012 6.25829 6.44194 6.54564 6.67889 6.97780 7.24574 7.61056 7.83744 8.02004 8.15240 8.62118 9.22142 9.78200 11.26932 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063070 B = 0.013513 C = 0.012344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.846892 B = 2071.556550 C = 2267.823875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.068 0.932 4 C 0.036 3.964 5 C -0.492 4.492 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.448 5.448 14 C -0.012 4.012 15 C -0.147 4.147 16 C -0.007 4.007 17 H 0.055 0.945 18 H 0.058 0.942 19 H 0.045 0.955 20 H 0.016 0.984 21 H 0.017 0.983 22 H 0.258 0.742 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 1.900 9.014 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.060 4.060 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.531 4.531 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.170 5.170 14 C -0.142 4.142 15 C -0.185 4.185 16 C -0.136 4.136 17 H 0.074 0.926 18 H 0.077 0.923 19 H 0.063 0.937 20 H 0.034 0.966 21 H 0.035 0.965 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.585 1.718 8.685 9.970 hybrid contribution 0.161 0.209 -0.144 0.301 sum -4.424 1.927 8.541 9.810 Atomic orbital electron populations 1.22559 0.99380 1.01651 1.00530 1.22327 0.90570 0.98950 0.94154 0.91340 1.19061 0.96268 0.95188 0.89641 1.21146 0.91898 1.33022 1.06989 0.92345 1.25013 0.98126 0.95841 0.95970 1.69961 1.35318 1.36942 1.12352 0.86666 0.86248 0.77996 0.77089 1.20354 1.21592 1.20487 1.68852 1.43977 1.03985 1.00178 1.23933 0.99587 0.96113 0.94532 1.23281 1.01167 0.97049 0.96957 1.24007 0.97797 0.97771 0.94033 0.92581 0.92301 0.93661 0.96553 0.96479 0.93275 0.91858 0.90384 0.89821 0.92159 0.90074 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 7.81 37.16 0.29 -2.91 15 2 C 0.05 1.05 2.35 -67.72 -0.16 0.89 15 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 15 4 C 0.04 0.95 4.55 -27.88 -0.13 0.82 15 5 C -0.49 -14.44 8.84 -34.44 -0.30 -14.74 15 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 15 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 8 N -0.90 -28.07 13.29 55.43 0.74 -27.33 15 9 Si 0.89 22.68 29.54 -169.99 -5.02 17.65 15 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 13 N -0.45 -9.12 5.90 -230.63 -1.36 -10.48 15 14 C -0.01 -0.20 7.74 -2.76 -0.02 -0.22 15 15 C -0.15 -2.12 8.28 -25.80 -0.21 -2.33 15 16 C -0.01 -0.13 7.37 -2.77 -0.02 -0.15 15 17 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 18 H 0.06 1.02 6.39 -51.93 -0.33 0.69 15 19 H 0.04 0.69 5.96 -51.93 -0.31 0.38 15 20 H 0.02 0.46 7.92 -51.93 -0.41 0.05 15 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 23 H 0.06 0.93 6.01 -51.93 -0.31 0.62 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 28 H 0.08 1.24 4.99 -51.93 -0.26 0.98 15 LS Contribution 226.75 15.07 3.42 3.42 Total: -1.00 -31.19 226.75 -7.00 -38.20 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.12 Total: -4.20 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -0.65 Total: -17.26 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.62 Total: -37.81 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.19 -7.00 -38.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.760 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds