Wall clock time and date at job start Mon Mar 30 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47130 * 240.00319 * 2 1 3 5 5 C 1.50702 * 109.47442 * 174.99913 * 4 2 1 6 6 H 1.08001 * 119.99438 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00096 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99930 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99900 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46843 * 60.00255 * 9 7 5 11 11 H 1.48496 * 109.47394 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47268 * 300.00657 * 9 7 5 13 13 N 1.46897 * 109.47274 * 119.99941 * 2 1 3 14 14 C 1.47961 * 110.99971 * 297.52019 * 13 2 1 15 15 C 1.53939 * 86.17696 * 137.58259 * 14 13 2 16 16 C 1.47961 * 110.99948 * 36.88237 * 13 2 1 17 17 H 1.09001 * 109.47248 * 49.96186 * 1 2 3 18 18 H 1.09001 * 109.47049 * 169.96494 * 1 2 3 19 19 H 1.08999 * 109.47173 * 289.96528 * 1 2 3 20 20 H 1.09000 * 109.46873 * 294.99593 * 4 2 1 21 21 H 1.09003 * 109.47454 * 54.99441 * 4 2 1 22 22 H 0.97002 * 119.99382 * 179.97438 * 8 7 5 23 23 H 1.08995 * 113.75731 * 23.26721 * 14 13 2 24 24 H 1.08999 * 113.75969 * 251.89629 * 14 13 2 25 25 H 1.09001 * 113.73263 * 90.64065 * 15 14 13 26 26 H 1.09000 * 113.73222 * 221.92065 * 15 14 13 27 27 H 1.08995 * 113.76155 * 108.09678 * 16 13 2 28 28 H 1.09007 * 113.85777 * 336.74682 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 3.5763 -1.8377 -3.2996 9 14 6.0920 -1.0610 -2.4370 10 1 6.6845 -1.6861 -1.2273 11 1 6.5870 -1.7610 -3.6495 12 1 6.4844 0.3700 -2.4973 13 7 2.0197 -0.6925 1.1994 14 6 1.5947 0.0121 2.4291 15 6 1.2878 -1.3843 2.9997 16 6 1.1547 -1.8445 1.5368 17 1 -0.3634 0.6611 -0.7868 18 1 -0.3633 -1.0120 -0.1791 19 1 -0.3633 0.3509 0.9659 20 1 1.7517 -1.7714 -1.2056 21 1 1.6053 -0.2617 -2.1370 22 1 4.0608 -2.2444 -4.0351 23 1 0.7108 0.6356 2.2948 24 1 2.4062 0.5277 2.9426 25 1 2.1274 -1.8368 3.5273 26 1 0.3551 -1.4333 3.5616 27 1 1.6147 -2.8123 1.3373 28 1 0.1417 -1.7659 1.1420 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:47 Heat of formation + Delta-G solvation = 10.555146 kcal Electronic energy + Delta-G solvation = -9999.986350 eV Core-core repulsion = 8244.169898 eV Total energy + Delta-G solvation = -1755.816452 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99859 -35.67695 -33.72457 -29.34177 -28.08349 -26.85567 -25.06937 -21.75129 -19.80496 -18.42550 -17.34071 -16.59120 -16.30376 -15.39652 -14.53295 -14.21344 -14.00690 -13.42729 -13.30481 -12.70678 -12.56103 -12.44983 -12.12869 -11.93586 -11.73461 -11.36982 -11.16907 -10.99776 -10.51456 -9.29657 -8.13722 -6.19900 1.39001 1.42822 1.50516 2.44895 3.16022 3.27578 3.74196 4.03092 4.13810 4.36043 4.42927 4.55260 4.65706 4.79559 4.89262 4.98029 5.01310 5.16275 5.19906 5.38620 5.45599 5.64809 5.78772 5.91436 6.29886 6.51214 6.93541 7.46141 8.98381 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.063070 B = 0.013513 C = 0.012344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.846892 B = 2071.556550 C = 2267.823875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.056 3.944 3 H 0.059 0.941 4 C 0.041 3.959 5 C -0.509 4.509 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.491 5.491 14 C -0.009 4.009 15 C -0.125 4.125 16 C -0.016 4.016 17 H 0.059 0.941 18 H 0.056 0.944 19 H 0.077 0.923 20 H -0.012 1.012 21 H -0.009 1.009 22 H 0.260 0.740 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 2.488 10.587 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.053 4.053 3 H 0.078 0.922 4 C 0.004 3.996 5 C -0.547 4.547 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.214 5.214 14 C -0.137 4.137 15 C -0.162 4.162 16 C -0.145 4.145 17 H 0.078 0.922 18 H 0.075 0.925 19 H 0.096 0.904 20 H 0.006 0.994 21 H 0.009 0.991 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.627 2.315 10.275 11.504 hybrid contribution 0.157 0.015 -0.634 0.653 sum -4.470 2.330 9.641 10.879 Atomic orbital electron populations 1.22424 0.96234 1.01878 1.02521 1.22045 0.93100 0.97524 0.92673 0.92234 1.18917 0.95203 0.93866 0.91612 1.21482 0.93442 1.32879 1.06891 0.92760 1.25929 1.03421 0.95413 0.95568 1.70094 1.37362 1.37774 1.12991 0.85555 0.79926 0.78527 0.77320 1.19763 1.20864 1.19298 1.68754 1.45810 1.05775 1.01065 1.24030 1.00429 0.97106 0.92151 1.23173 1.02906 0.95109 0.95055 1.24102 0.97659 0.96050 0.96666 0.92204 0.92507 0.90444 0.99377 0.99075 0.93106 0.90016 0.89913 0.89597 0.88732 0.92186 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.75 7.81 71.98 0.56 -5.18 15 2 C 0.06 2.37 2.35 44.92 0.11 2.48 15 3 H 0.06 2.60 8.14 -2.38 -0.02 2.58 15 4 C 0.04 2.27 4.55 29.85 0.14 2.40 15 5 C -0.51 -30.43 8.84 25.60 0.23 -30.20 15 6 H 0.05 3.22 7.74 -2.91 -0.02 3.20 15 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 15 8 N -0.94 -59.51 13.29 21.45 0.28 -59.23 15 9 Si 0.96 46.81 29.54 68.60 2.03 48.83 15 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 13 N -0.49 -19.55 5.90 -883.59 -5.21 -24.77 15 14 C -0.01 -0.25 7.74 86.41 0.67 0.42 15 15 C -0.12 -3.19 8.28 31.24 0.26 -2.94 15 16 C -0.02 -0.54 7.37 86.41 0.64 0.09 15 17 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 18 H 0.06 1.91 6.39 -2.39 -0.02 1.90 15 19 H 0.08 2.08 5.96 -2.39 -0.01 2.07 15 20 H -0.01 -0.73 7.92 -2.39 -0.02 -0.74 15 21 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 15 22 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 23 H 0.08 2.08 6.01 -2.39 -0.01 2.06 15 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.09 2.70 4.99 -2.38 -0.01 2.69 15 Total: -1.00 -67.70 226.75 1.27 -66.43 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.12 Total: 1.64 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.06 Total: -32.91 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -4.93 Total: -83.99 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -67.70 1.27 -66.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.986 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds