Wall clock time and date at job start Mon Mar 30 2020 20:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47218 * 2 1 4 4 C 1.52999 * 109.46814 * 120.00216 * 2 1 3 5 5 C 1.50699 * 109.46736 * 184.99955 * 4 2 1 6 6 H 1.08002 * 120.00667 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00139 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00280 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46935 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47190 * 119.99744 * 9 7 5 12 12 H 1.48501 * 109.46972 * 240.00175 * 9 7 5 13 13 N 1.46903 * 109.46757 * 239.99881 * 2 1 3 14 14 C 1.47962 * 111.00056 * 60.00413 * 13 2 1 15 15 C 1.53935 * 86.30001 * 137.63674 * 14 13 2 16 16 C 1.48308 * 111.10591 * 159.25177 * 13 2 1 17 17 H 1.09005 * 109.47219 * 300.00516 * 1 2 3 18 18 H 1.09002 * 109.47269 * 59.99659 * 1 2 3 19 19 H 1.09000 * 109.47626 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46742 * 304.99348 * 4 2 1 21 21 H 1.08992 * 109.47303 * 65.00033 * 4 2 1 22 22 H 0.97002 * 120.00654 * 179.97438 * 8 7 5 23 23 H 1.09002 * 113.76087 * 23.26139 * 14 13 2 24 24 H 1.09005 * 113.75858 * 252.00601 * 14 13 2 25 25 H 1.09000 * 113.73561 * 90.58655 * 15 14 13 26 26 H 1.09007 * 113.72883 * 221.75679 * 15 14 13 27 27 H 1.09003 * 113.75437 * 108.13284 * 16 13 2 28 28 H 1.08998 * 113.85723 * 336.78984 * 16 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2302 -1.1927 2.3583 8 7 3.5762 -1.8362 3.3005 9 14 6.0920 -1.0616 2.4366 10 1 6.5838 -0.2931 1.2649 11 1 6.4870 -0.3650 3.6872 12 1 6.6852 -2.4228 2.4196 13 7 2.0196 -0.6925 -1.1995 14 6 1.5452 -0.0216 -2.4299 15 6 2.9671 -0.2398 -2.9777 16 6 3.4174 -0.3042 -1.5072 17 1 -0.3634 0.5139 0.8900 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 1.6053 -0.2617 2.1369 21 1 1.7516 -1.7715 1.2056 22 1 4.0605 -2.2430 4.0360 23 1 1.2861 1.0274 -2.2862 24 1 0.7775 -0.5795 -2.9663 25 1 3.0905 -1.1796 -3.5159 26 1 3.3636 0.6170 -3.5226 27 1 4.1459 -1.0894 -1.3049 28 1 3.7078 0.6617 -1.0940 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933637.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:49 Heat of formation + Delta-G solvation = 3.400046 kcal Electronic energy + Delta-G solvation = -10052.114153 eV Core-core repulsion = 8295.987432 eV Total energy + Delta-G solvation = -1756.126721 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.69851 -35.70814 -33.90099 -29.71414 -27.91154 -26.41396 -25.04868 -21.38154 -20.67121 -18.33320 -16.96333 -16.73787 -16.20554 -15.17821 -14.81713 -13.91301 -13.76080 -13.34404 -13.18928 -12.97882 -12.68213 -12.50413 -12.30696 -12.13404 -11.69999 -11.44338 -10.95451 -10.76321 -10.53014 -9.45897 -8.15383 -6.23051 1.38384 1.39141 1.51320 2.42194 3.14011 3.27466 3.75626 4.06487 4.28709 4.33103 4.49138 4.65189 4.67342 4.81863 4.94273 4.99395 5.07667 5.17717 5.25610 5.38421 5.54101 5.60279 5.71790 5.89965 6.28925 6.46050 6.91309 7.43982 8.97675 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.053576 B = 0.016032 C = 0.012870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.493819 B = 1746.090084 C = 2175.010604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.030 0.970 4 C 0.037 3.963 5 C -0.526 4.526 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.492 5.492 14 C 0.000 4.000 15 C -0.135 4.135 16 C 0.016 3.984 17 H 0.056 0.944 18 H 0.071 0.929 19 H 0.048 0.952 20 H -0.010 1.010 21 H -0.012 1.012 22 H 0.260 0.740 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 4.871 -10.782 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 H 0.048 0.952 4 C -0.001 4.001 5 C -0.564 4.564 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.215 5.215 14 C -0.128 4.128 15 C -0.172 4.172 16 C -0.113 4.113 17 H 0.075 0.925 18 H 0.090 0.910 19 H 0.067 0.933 20 H 0.008 0.992 21 H 0.006 0.994 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.686 4.106 -10.484 11.385 hybrid contribution 0.979 0.572 0.806 1.391 sum -0.707 4.677 -9.679 10.773 Atomic orbital electron populations 1.21771 0.93967 1.01641 1.01809 1.22112 0.95449 0.94897 0.92707 0.95156 1.18965 0.95465 0.94118 0.91524 1.21928 0.93277 1.33276 1.07905 0.90668 1.25969 1.03417 0.95300 0.95555 1.70128 1.37356 1.37620 1.12979 0.85487 0.79916 0.77861 0.78361 1.18154 1.20659 1.20834 1.68587 1.04836 1.46977 1.01147 1.23898 0.98216 0.98535 0.92174 1.23326 0.95376 1.03246 0.95279 1.23765 0.92659 0.99382 0.95486 0.92540 0.91004 0.93290 0.99220 0.99375 0.93158 0.91043 0.88858 0.88990 0.89284 0.91835 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.09 71.98 0.65 -4.12 15 2 C 0.06 2.46 1.98 44.91 0.09 2.55 15 3 H 0.03 1.31 7.63 -2.39 -0.02 1.29 15 4 C 0.04 2.02 4.65 29.85 0.14 2.16 15 5 C -0.53 -30.15 8.18 25.60 0.21 -29.95 15 6 H 0.08 4.05 4.67 -2.91 -0.01 4.03 15 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 15 8 N -0.94 -59.09 13.29 21.45 0.28 -58.80 15 9 Si 0.96 45.22 29.54 68.60 2.03 47.25 15 10 H -0.26 -11.39 7.11 99.48 0.71 -10.69 15 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 13 N -0.49 -19.54 5.98 -880.11 -5.27 -24.81 15 14 C 0.00 0.01 6.71 86.41 0.58 0.59 15 15 C -0.13 -3.65 8.28 31.23 0.26 -3.39 15 16 C 0.02 0.60 5.49 86.34 0.47 1.07 15 17 H 0.06 1.94 8.14 -2.38 -0.02 1.92 15 18 H 0.07 2.07 7.02 -2.39 -0.02 2.06 15 19 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 20 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 21 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 15 22 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 23 H 0.07 1.89 7.66 -2.39 -0.02 1.88 15 24 H 0.09 2.39 8.14 -2.38 -0.02 2.37 15 25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.09 1.95 8.14 -2.38 -0.02 1.93 15 27 H 0.06 2.63 7.88 -2.39 -0.02 2.61 15 28 H 0.06 2.27 6.72 -2.39 -0.02 2.26 15 Total: -1.00 -66.10 226.86 1.02 -65.07 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.11 Total: 2.26 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 2.87 Total: -30.97 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -4.98 Total: -83.61 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.10 1.02 -65.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933637.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.474 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds