Wall clock time and date at job start Mon Mar 30 2020 20:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.50072 * 2 1 4 4 C 1.53038 * 109.53475 * 239.89946 * 2 1 3 5 5 N 1.46844 * 109.52243 * 180.86259 * 4 2 1 6 6 C 1.46840 * 111.19909 * 61.74445 * 5 4 2 7 7 C 1.53039 * 109.52434 * 298.25408 * 6 5 4 8 8 C 1.53120 * 109.27743 * 59.18034 * 7 6 5 9 9 H 1.09005 * 109.57688 * 62.28216 * 8 7 6 10 10 C 1.50701 * 109.52729 * 182.44032 * 8 7 6 11 11 H 1.08002 * 119.99761 * 119.67875 * 10 8 7 12 12 C 1.37871 * 119.99694 * 299.96437 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 H 1.09004 * 109.46801 * 299.92206 * 1 2 3 19 19 H 1.08995 * 109.47199 * 59.91806 * 1 2 3 20 20 H 1.08993 * 109.47252 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46211 * 300.87844 * 4 2 1 22 22 H 1.08995 * 109.46076 * 60.85555 * 4 2 1 23 23 H 1.00894 * 110.99876 * 297.64110 * 5 4 2 24 24 H 1.08992 * 109.46810 * 58.27083 * 6 5 4 25 25 H 1.09003 * 109.46101 * 178.25530 * 6 5 4 26 26 H 1.09002 * 109.50190 * 299.24271 * 7 6 5 27 27 H 1.08995 * 109.50480 * 179.11847 * 7 6 5 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7233 -1.2478 5 7 3.5101 -0.7412 -1.2371 6 6 4.0237 -1.4717 -0.0715 7 6 3.5713 -0.7707 1.2115 8 6 2.0413 -0.7234 1.2490 9 1 1.6448 -1.7386 1.2699 10 6 1.5903 0.0186 2.4808 11 1 0.9983 0.9167 2.3837 12 6 1.9386 -0.4457 3.7313 13 7 2.6595 -1.5393 3.8496 14 14 1.3862 0.4784 5.2579 15 1 0.0694 -0.0440 5.7034 16 1 2.3855 0.2890 6.3399 17 1 1.2644 1.9247 4.9441 18 1 -0.3633 0.5126 0.8907 19 1 -0.3633 0.5151 -0.8892 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6661 -1.7466 -1.2541 22 1 1.6915 -0.2024 -2.1388 23 1 3.8833 0.1955 -1.2701 24 1 3.6389 -2.4913 -0.0832 25 1 5.1129 -1.4941 -0.1080 26 1 3.9673 0.2446 1.2305 27 1 3.9396 -1.3219 2.0767 28 1 2.9048 -1.8657 4.7294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260945986.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:51 Heat of formation + Delta-G solvation = -23.062535 kcal Electronic energy + Delta-G solvation = -10228.516666 eV Core-core repulsion = 8471.242442 eV Total energy + Delta-G solvation = -1757.274224 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.06046 -33.21047 -31.94269 -29.77535 -26.00992 -24.77608 -21.86171 -20.61704 -18.98337 -16.42178 -15.10174 -14.45673 -13.98788 -13.28986 -12.95874 -12.60839 -11.95804 -11.61236 -11.18431 -11.02433 -10.85651 -10.85095 -10.56911 -10.09266 -9.95365 -9.48705 -9.19403 -8.75277 -8.36067 -7.49840 -5.96416 -4.03232 3.29459 3.36449 3.39380 4.43690 5.08848 5.31388 5.70360 5.89846 6.03114 6.14460 6.31434 6.41543 6.51451 6.55787 6.61664 6.87967 7.04816 7.08163 7.20306 7.38456 7.60954 7.79424 7.99887 8.03302 8.16951 8.47259 8.99945 9.61021 11.08169 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.060474 B = 0.016848 C = 0.014083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.894801 B = 1661.515483 C = 1987.739677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 H 0.052 0.948 4 C 0.062 3.938 5 N -0.693 5.693 6 C 0.052 3.948 7 C -0.145 4.145 8 C 0.056 3.944 9 H 0.025 0.975 10 C -0.509 4.509 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.276 1.276 18 H 0.060 0.940 19 H 0.030 0.970 20 H 0.044 0.956 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.330 0.670 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 1.721 -5.518 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 H 0.071 0.929 4 C -0.068 4.068 5 N -0.320 5.320 6 C -0.077 4.077 7 C -0.184 4.184 8 C 0.038 3.962 9 H 0.043 0.957 10 C -0.547 4.547 11 H 0.073 0.927 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.201 1.201 18 H 0.079 0.921 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.146 0.854 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.177 1.040 -5.813 5.908 hybrid contribution -0.463 1.131 1.746 2.131 sum -0.640 2.170 -4.068 4.655 Atomic orbital electron populations 1.21637 0.96256 1.00766 1.00124 1.21904 0.95558 0.99337 0.97301 0.92934 1.22059 0.87752 1.00259 0.96685 1.60848 1.07728 1.20710 1.42709 1.22112 0.97948 0.97908 0.89708 1.22269 0.99773 0.98812 0.97584 1.18685 0.91304 0.95587 0.90665 0.95738 1.21217 1.32458 1.10341 0.90657 0.92736 1.24972 0.95174 0.95027 0.98908 1.69879 1.37840 1.22061 1.23264 0.86659 0.78399 0.80253 0.83067 1.20753 1.21288 1.20052 0.92097 0.95051 0.93668 0.91887 0.92583 0.85392 0.92045 0.92763 0.94861 0.88874 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.98 37.16 0.33 -2.16 15 2 C -0.12 -2.51 2.32 -90.53 -0.21 -2.72 15 3 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 4 C 0.06 1.15 5.84 -3.83 -0.02 1.12 15 5 N -0.69 -12.74 6.87 -113.82 -0.78 -13.52 15 6 C 0.05 1.05 6.55 -3.84 -0.03 1.02 15 7 C -0.14 -3.43 5.10 -26.65 -0.14 -3.56 15 8 C 0.06 1.39 1.67 -91.65 -0.15 1.24 15 9 H 0.02 0.67 8.14 -51.93 -0.42 0.25 15 10 C -0.51 -13.90 7.85 -34.44 -0.27 -14.17 15 11 H 0.05 1.48 6.89 -52.49 -0.36 1.12 15 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 13 N -0.89 -25.57 11.36 55.43 0.63 -24.94 15 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 H 0.06 1.25 6.79 -51.93 -0.35 0.90 15 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.33 5.69 8.86 -39.30 -0.35 5.34 15 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.09 2.47 6.16 -51.93 -0.32 2.15 15 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 222.99 15.07 3.36 3.36 Total: -1.00 -27.88 222.99 -6.71 -34.60 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.32 Total: 1.78 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.58 Total: -17.67 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.15 Total: -38.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.88 -6.71 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945986.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.532 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds