Wall clock time and date at job start Mon Mar 30 2020 20:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47341 * 240.00105 * 2 1 3 5 5 H 1.08998 * 109.47563 * 185.00383 * 4 2 1 6 6 N 1.46901 * 109.47211 * 304.99951 * 4 2 1 7 7 C 1.50701 * 109.47438 * 64.99842 * 4 2 1 8 8 H 1.08000 * 119.99766 * 0.02562 * 7 4 2 9 9 C 1.37875 * 120.00422 * 179.97438 * 7 4 2 10 10 N 1.31515 * 120.00128 * 179.97438 * 9 7 4 11 11 Si 1.86798 * 119.99798 * 0.02562 * 9 7 4 12 12 H 1.48493 * 109.47631 * 89.99869 * 11 9 7 13 13 H 1.48510 * 109.47171 * 210.00042 * 11 9 7 14 14 H 1.48503 * 109.47299 * 329.99499 * 11 9 7 15 15 C 1.52996 * 109.47177 * 119.99918 * 2 1 3 16 16 C 1.53000 * 117.49997 * 300.00307 * 15 2 1 17 17 C 1.53002 * 60.02940 * 252.49592 * 16 15 2 18 18 H 1.08995 * 109.47239 * 300.00014 * 1 2 3 19 19 H 1.09006 * 109.46923 * 60.00194 * 1 2 3 20 20 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 21 21 H 1.00903 * 110.99932 * 59.99848 * 6 4 2 22 22 H 1.00900 * 111.00675 * 183.95056 * 6 4 2 23 23 H 0.97000 * 120.00041 * 179.97438 * 10 9 7 24 24 H 1.09008 * 115.56055 * 85.68820 * 15 2 1 25 25 H 1.09002 * 117.49833 * 359.97438 * 16 15 2 26 26 H 1.09002 * 117.49953 * 144.99738 * 16 15 2 27 27 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 28 28 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 3.1263 -0.7995 -1.2056 6 7 1.4543 -2.0670 -1.3111 7 6 1.6413 0.0570 -2.4766 8 1 1.0806 0.9746 -2.3757 9 6 1.9933 -0.4016 -3.7283 10 7 1.6449 0.2773 -4.7994 11 14 2.9637 -1.9882 -3.9027 12 1 2.0247 -3.1326 -4.0201 13 1 3.8128 -1.9179 -5.1191 14 1 3.8254 -2.1754 -2.7079 15 6 2.0399 -0.7212 1.2492 16 6 1.6356 -0.1495 2.6096 17 6 3.0743 0.0053 2.1125 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 0.4471 -2.0215 -1.3524 22 1 1.8249 -2.5872 -2.0922 23 1 1.8929 -0.0452 -5.6800 24 1 2.1270 -1.8045 1.1643 25 1 1.0066 0.7407 2.6146 26 1 1.4564 -0.8566 3.4195 27 1 3.3916 0.9972 1.7905 28 1 3.8415 -0.6001 2.5951 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983551.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:11 Heat of formation + Delta-G solvation = -5.685574 kcal Electronic energy + Delta-G solvation = -10031.117159 eV Core-core repulsion = 8274.596456 eV Total energy + Delta-G solvation = -1756.520703 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.33342 -36.50168 -33.99475 -31.33329 -28.12895 -25.85709 -23.01541 -22.50038 -20.04386 -18.98085 -17.59066 -16.35906 -15.96562 -15.26644 -14.87666 -14.58470 -13.70264 -13.57391 -13.16882 -12.84559 -12.60046 -12.31510 -11.97429 -11.74828 -11.53368 -11.35011 -10.90297 -10.79991 -10.53192 -9.30078 -8.36239 -6.41790 1.24086 1.32787 1.42297 2.24173 2.98124 3.09564 3.90507 4.08885 4.18865 4.25293 4.45605 4.67434 4.72482 4.84937 4.95325 5.10962 5.15962 5.29180 5.37684 5.41441 5.55858 5.65084 5.74379 6.10517 6.49873 6.63971 6.79625 7.25209 8.80360 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.066187 B = 0.015049 C = 0.013948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.945157 B = 1860.185637 C = 2006.955226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.035 4.035 3 H 0.045 0.955 4 C 0.186 3.814 5 H 0.026 0.974 6 N -0.835 5.835 7 C -0.547 4.547 8 H 0.036 0.964 9 C 0.010 3.990 10 N -0.944 5.944 11 Si 0.941 3.059 12 H -0.258 1.258 13 H -0.296 1.296 14 H -0.249 1.249 15 C -0.146 4.146 16 C -0.169 4.169 17 C -0.188 4.188 18 H 0.060 0.940 19 H 0.032 0.968 20 H 0.060 0.940 21 H 0.336 0.664 22 H 0.309 0.691 23 H 0.266 0.734 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 -4.068 11.287 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.054 4.054 3 H 0.064 0.936 4 C 0.076 3.924 5 H 0.044 0.956 6 N -0.368 5.368 7 C -0.586 4.586 8 H 0.054 0.946 9 C -0.188 4.188 10 N -0.585 5.585 11 Si 0.767 3.233 12 H -0.183 1.183 13 H -0.224 1.224 14 H -0.174 1.174 15 C -0.164 4.164 16 C -0.205 4.205 17 C -0.225 4.225 18 H 0.079 0.921 19 H 0.051 0.949 20 H 0.079 0.921 21 H 0.150 0.850 22 H 0.124 0.876 23 H 0.075 0.925 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.027 -4.170 11.834 12.589 hybrid contribution 0.034 0.080 -1.794 1.797 sum 1.061 -4.090 10.040 10.893 Atomic orbital electron populations 1.21614 0.94999 1.01613 1.00245 1.20448 0.95973 0.96687 0.92314 0.93634 1.19283 0.94442 0.86250 0.92427 0.95600 1.59665 1.11437 1.17658 1.48038 1.22144 1.34926 1.09639 0.91926 0.94591 1.25933 0.96348 1.00898 0.95626 1.70067 1.48260 1.41378 0.98760 0.85908 0.79694 0.79952 0.77767 1.18302 1.22374 1.17366 1.22286 1.03808 0.99423 0.90899 1.22960 0.97283 1.03260 0.97037 1.23068 0.93028 1.01847 1.04592 0.92080 0.94873 0.92100 0.85041 0.87643 0.92549 0.87751 0.88953 0.87598 0.89665 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.38 71.98 0.60 -4.04 15 2 C -0.04 -1.39 2.31 -10.80 -0.02 -1.41 15 3 H 0.05 1.90 7.90 -2.39 -0.02 1.88 15 4 C 0.19 8.65 2.01 44.17 0.09 8.73 15 5 H 0.03 1.28 7.20 -2.39 -0.02 1.26 15 6 N -0.83 -35.20 8.45 -171.80 -1.45 -36.65 15 7 C -0.55 -30.77 8.60 25.60 0.22 -30.55 15 8 H 0.04 2.25 7.30 -2.91 -0.02 2.23 15 9 C 0.01 0.58 5.47 84.65 0.46 1.04 15 10 N -0.94 -58.73 13.96 21.45 0.30 -58.43 15 11 Si 0.94 43.99 24.61 68.60 1.69 45.68 15 12 H -0.26 -11.17 7.01 99.48 0.70 -10.48 15 13 H -0.30 -13.93 7.11 99.48 0.71 -13.23 15 14 H -0.25 -11.18 6.54 99.48 0.65 -10.53 15 15 C -0.15 -4.77 5.04 -10.77 -0.05 -4.82 15 16 C -0.17 -4.37 9.73 30.60 0.30 -4.07 15 17 C -0.19 -5.28 10.18 30.62 0.31 -4.97 15 18 H 0.06 1.88 7.29 -2.39 -0.02 1.86 15 19 H 0.03 1.37 6.95 -2.38 -0.02 1.35 15 20 H 0.06 2.09 6.61 -2.39 -0.02 2.08 15 21 H 0.34 13.65 7.03 -89.69 -0.63 13.02 15 22 H 0.31 13.29 4.30 -89.69 -0.39 12.91 15 23 H 0.27 15.49 8.31 -92.71 -0.77 14.72 15 24 H 0.10 3.56 7.71 -2.38 -0.02 3.54 15 25 H 0.09 2.32 7.61 -2.39 -0.02 2.30 15 26 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.08 2.45 8.05 -2.39 -0.02 2.43 15 28 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -61.89 221.94 2.51 -59.38 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.07 Total: 30.11 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 1.91 Total: -40.09 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -1.15 Total: -95.08 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.69 Total: 45.68 kcal Total: -61.89 2.51 -59.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983551.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.699 kcal (2) G-P(sol) polarization free energy of solvation -61.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds