Wall clock time and date at job start Mon Mar 30 2020 20:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.06642 * 2 1 4 4 C 1.53998 * 109.91775 * 121.19804 * 2 1 3 5 5 C 1.54599 * 105.13777 * 118.12675 * 4 2 1 6 6 H 1.09003 * 110.72128 * 96.40586 * 5 4 2 7 7 C 1.50697 * 110.72249 * 219.50778 * 5 4 2 8 8 H 1.07995 * 120.00224 * 2.13393 * 7 5 4 9 9 C 1.37880 * 119.99665 * 182.13351 * 7 5 4 10 10 N 1.31511 * 120.00182 * 8.90013 * 9 7 5 11 11 Si 1.86805 * 119.99779 * 188.88975 * 9 7 5 12 12 H 1.48505 * 109.46738 * 94.98006 * 11 9 7 13 13 H 1.48500 * 109.47234 * 214.97498 * 11 9 7 14 14 H 1.48490 * 109.47262 * 334.98190 * 11 9 7 15 15 C 1.54933 * 103.08172 * 337.95891 * 5 4 2 16 16 N 1.47895 * 109.92170 * 238.79053 * 2 1 3 17 17 H 1.08999 * 109.47036 * 298.80088 * 1 2 3 18 18 H 1.08997 * 109.47238 * 58.79814 * 1 2 3 19 19 H 1.08998 * 109.47238 * 178.79954 * 1 2 3 20 20 H 1.09004 * 109.47182 * 181.20673 * 3 2 1 21 21 H 1.09000 * 109.46863 * 301.19927 * 3 2 1 22 22 H 1.08997 * 109.47516 * 61.20097 * 3 2 1 23 23 H 1.09000 * 110.30588 * 359.21374 * 4 2 1 24 24 H 1.09000 * 110.31228 * 237.04281 * 4 2 1 25 25 H 0.97003 * 120.00012 * 179.97438 * 10 9 7 26 26 H 1.08996 * 110.66565 * 155.94182 * 15 5 4 27 27 H 1.09000 * 110.66420 * 279.06545 * 15 5 4 28 28 H 1.00896 * 111.00767 * 145.46117 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7500 1.2385 5 6 2.8536 -1.9482 0.6764 6 1 3.9172 -1.7145 0.6292 7 6 2.6174 -3.1833 1.5070 8 1 1.9340 -3.1496 2.3425 9 6 3.2740 -4.3563 1.2001 10 7 4.2325 -4.3572 0.2997 11 14 2.8021 -5.9441 2.0637 12 1 1.8236 -6.6885 1.2308 13 1 4.0148 -6.7770 2.2658 14 1 2.1927 -5.6292 3.3806 15 6 2.2671 -2.1241 -0.7468 16 7 2.0339 -0.7205 -1.1892 17 1 -0.3633 0.4951 0.9005 18 1 -0.3633 0.5324 -0.8790 19 1 -0.3633 -1.0274 -0.0215 20 1 3.1447 1.4259 -0.0216 21 1 1.6795 1.9610 -0.8790 22 1 1.7146 1.9483 0.9005 23 1 1.2224 -1.1026 1.8478 24 1 2.7063 -0.1025 1.8250 25 1 4.6946 -5.1824 0.0841 26 1 2.9838 -2.6228 -1.3992 27 1 1.3287 -2.6773 -0.7105 28 1 2.8866 -0.3030 -1.5307 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118839.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:24 Heat of formation + Delta-G solvation = -16.911427 kcal Electronic energy + Delta-G solvation = -10108.993210 eV Core-core repulsion = 8351.985718 eV Total energy + Delta-G solvation = -1757.007492 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.27733 -33.12911 -30.90254 -29.12624 -26.86324 -25.03496 -23.44397 -19.68300 -18.42801 -16.38150 -15.21061 -14.40108 -13.71126 -13.42116 -13.02511 -12.46310 -12.10635 -11.65009 -11.37920 -11.17229 -10.95456 -10.78982 -10.50739 -10.36859 -10.04031 -9.61921 -9.07075 -9.02035 -8.42708 -7.63920 -6.04050 -4.03770 3.30487 3.37682 3.40727 4.43509 5.07710 5.29361 5.47752 5.57773 5.85305 6.07316 6.21069 6.29847 6.36179 6.40786 6.55916 6.62629 6.84382 6.93008 7.05968 7.21503 7.46499 7.69010 7.86064 7.95529 8.30169 8.44811 8.98029 9.58826 11.06450 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.080071 B = 0.013655 C = 0.013062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.607306 B = 2049.979296 C = 2143.026724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.088 3.912 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.020 3.980 6 H 0.033 0.967 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.889 3.111 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.057 3.943 16 N -0.681 5.681 17 H 0.046 0.954 18 H 0.047 0.953 19 H 0.055 0.945 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.260 0.740 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 6.523 -0.507 7.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.004 4.004 3 C -0.202 4.202 4 C -0.175 4.175 5 C 0.001 3.999 6 H 0.051 0.949 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.717 3.283 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.072 4.072 16 N -0.308 5.308 17 H 0.065 0.935 18 H 0.067 0.933 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.323 6.302 -0.945 7.701 hybrid contribution 0.671 -0.919 1.028 1.533 sum -3.652 5.384 0.084 6.506 Atomic orbital electron populations 1.21673 0.94709 1.01631 0.99881 1.21671 0.95173 0.92606 0.90903 1.22041 1.00538 0.96481 1.01174 1.22970 0.99851 0.98131 0.96556 1.20117 0.94949 0.92101 0.92769 0.94877 1.21093 1.25374 0.94415 1.14059 0.92638 1.24998 0.94427 0.99093 0.95384 1.69969 1.22173 1.27242 1.33474 0.86624 0.78050 0.83688 0.79940 1.20627 1.21311 1.19911 1.23236 0.99556 0.86935 0.97471 1.63056 1.33288 1.04700 1.29758 0.93538 0.93340 0.92565 0.93002 0.92882 0.92726 0.92299 0.93662 0.93009 0.91486 0.91978 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.62 37.16 0.32 -1.74 15 2 C 0.09 1.63 1.16 -130.53 -0.15 1.48 15 3 C -0.14 -2.23 8.26 37.16 0.31 -1.92 15 4 C -0.14 -2.91 5.78 -25.37 -0.15 -3.06 15 5 C 0.02 0.52 2.80 -89.91 -0.25 0.27 15 6 H 0.03 0.92 8.12 -51.93 -0.42 0.50 15 7 C -0.51 -14.23 8.45 -34.44 -0.29 -14.53 15 8 H 0.06 1.54 7.55 -52.49 -0.40 1.14 15 9 C 0.06 1.76 5.32 -17.82 -0.09 1.67 15 10 N -0.89 -25.84 13.03 55.43 0.72 -25.12 15 11 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 15 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 15 C 0.06 1.35 6.69 -1.63 -0.01 1.34 15 16 N -0.68 -13.72 7.04 -96.11 -0.68 -14.40 15 17 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.05 0.79 8.11 -51.93 -0.42 0.37 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.06 1.28 7.21 -51.93 -0.37 0.90 15 24 H 0.04 0.92 7.69 -51.93 -0.40 0.52 15 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 26 H 0.07 1.70 8.06 -51.93 -0.42 1.28 15 27 H 0.06 1.55 8.05 -51.93 -0.42 1.13 15 28 H 0.32 6.14 8.38 -39.29 -0.33 5.81 15 LS Contribution 230.20 15.07 3.47 3.47 Total: -1.00 -28.35 230.20 -6.25 -34.60 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.43 Total: 1.50 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.32 Total: -16.50 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.05 Total: -39.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.35 -6.25 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118839.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.690 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds