Wall clock time and date at job start Mon Mar 30 2020 20:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.06642 * 2 1 4 4 C 1.53998 * 109.91775 * 121.19804 * 2 1 3 5 5 C 1.54599 * 105.13777 * 118.12675 * 4 2 1 6 6 H 1.09003 * 110.72128 * 96.40586 * 5 4 2 7 7 C 1.50697 * 110.72249 * 219.50778 * 5 4 2 8 8 H 1.07995 * 120.00224 * 2.13393 * 7 5 4 9 9 C 1.37880 * 119.99665 * 182.13351 * 7 5 4 10 10 N 1.31511 * 120.00182 * 8.90013 * 9 7 5 11 11 Si 1.86805 * 119.99779 * 188.88975 * 9 7 5 12 12 H 1.48505 * 109.46738 * 94.98006 * 11 9 7 13 13 H 1.48500 * 109.47234 * 214.97498 * 11 9 7 14 14 H 1.48490 * 109.47262 * 334.98190 * 11 9 7 15 15 C 1.54933 * 103.08172 * 337.95891 * 5 4 2 16 16 N 1.47895 * 109.92170 * 238.79053 * 2 1 3 17 17 H 1.08999 * 109.47036 * 298.80088 * 1 2 3 18 18 H 1.08997 * 109.47238 * 58.79814 * 1 2 3 19 19 H 1.08998 * 109.47238 * 178.79954 * 1 2 3 20 20 H 1.09004 * 109.47182 * 181.20673 * 3 2 1 21 21 H 1.09000 * 109.46863 * 301.19927 * 3 2 1 22 22 H 1.08997 * 109.47516 * 61.20097 * 3 2 1 23 23 H 1.09000 * 110.30588 * 359.21374 * 4 2 1 24 24 H 1.09000 * 110.31228 * 237.04281 * 4 2 1 25 25 H 0.97003 * 120.00012 * 179.97438 * 10 9 7 26 26 H 1.08996 * 110.66565 * 155.94182 * 15 5 4 27 27 H 1.09000 * 110.66420 * 279.06545 * 15 5 4 28 28 H 1.00896 * 111.00767 * 145.46117 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7500 1.2385 5 6 2.8536 -1.9482 0.6764 6 1 3.9172 -1.7145 0.6292 7 6 2.6174 -3.1833 1.5070 8 1 1.9340 -3.1496 2.3425 9 6 3.2740 -4.3563 1.2001 10 7 4.2325 -4.3572 0.2997 11 14 2.8021 -5.9441 2.0637 12 1 1.8236 -6.6885 1.2308 13 1 4.0148 -6.7770 2.2658 14 1 2.1927 -5.6292 3.3806 15 6 2.2671 -2.1241 -0.7468 16 7 2.0339 -0.7205 -1.1892 17 1 -0.3633 0.4951 0.9005 18 1 -0.3633 0.5324 -0.8790 19 1 -0.3633 -1.0274 -0.0215 20 1 3.1447 1.4259 -0.0216 21 1 1.6795 1.9610 -0.8790 22 1 1.7146 1.9483 0.9005 23 1 1.2224 -1.1026 1.8478 24 1 2.7063 -0.1025 1.8250 25 1 4.6946 -5.1824 0.0841 26 1 2.9838 -2.6228 -1.3992 27 1 1.3287 -2.6773 -0.7105 28 1 2.8866 -0.3030 -1.5307 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118839.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:24 Heat of formation + Delta-G solvation = -35.860921 kcal Electronic energy + Delta-G solvation = -10109.814921 eV Core-core repulsion = 8351.985718 eV Total energy + Delta-G solvation = -1757.829204 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.95847 -35.13418 -32.63828 -30.98042 -28.16558 -26.96517 -25.28351 -21.62864 -20.00091 -18.51170 -16.92895 -16.37585 -15.37679 -14.89255 -14.75122 -14.25061 -13.73188 -13.26720 -13.08290 -12.80982 -12.71737 -12.47404 -12.29702 -12.12283 -11.65543 -11.39314 -11.08057 -10.90044 -10.55823 -9.37864 -8.18626 -6.25525 1.38892 1.40495 1.50606 2.40579 3.12640 3.47479 4.02702 4.14940 4.36987 4.58859 4.73172 4.84346 4.90614 4.93515 5.02278 5.09088 5.15874 5.24131 5.34395 5.49377 5.57771 5.69168 5.85412 6.04806 6.35205 6.66157 6.83734 7.40522 8.91512 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.080071 B = 0.013655 C = 0.013062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.607306 B = 2049.979296 C = 2143.026724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.085 3.915 3 C -0.138 4.138 4 C -0.131 4.131 5 C 0.012 3.988 6 H 0.000 1.000 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.920 5.920 11 Si 0.954 3.046 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.072 3.928 16 N -0.672 5.672 17 H 0.068 0.932 18 H 0.064 0.936 19 H 0.034 0.966 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.262 0.738 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 7.365 -0.167 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.007 4.007 3 C -0.196 4.196 4 C -0.170 4.170 5 C -0.008 4.008 6 H 0.018 0.982 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.559 5.559 11 Si 0.780 3.220 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.058 4.058 16 N -0.300 5.300 17 H 0.087 0.913 18 H 0.083 0.917 19 H 0.053 0.947 20 H 0.068 0.932 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.283 7.163 -0.604 8.921 hybrid contribution 0.987 -1.149 0.927 1.776 sum -4.296 6.014 0.324 7.398 Atomic orbital electron populations 1.21655 0.93198 1.00890 1.01820 1.21825 0.96365 0.94022 0.88441 1.21982 1.00398 0.94119 1.03071 1.22903 0.99223 0.96985 0.97840 1.20093 0.93661 0.93176 0.93836 0.98174 1.21434 1.25358 0.95815 1.14375 0.93017 1.25791 0.94260 1.02337 0.96182 1.70083 1.23013 1.28084 1.34754 0.85598 0.77844 0.79542 0.79052 1.20002 1.20839 1.19193 1.22852 0.97806 0.88906 0.96233 1.63039 1.33585 1.02931 1.30434 0.91346 0.91692 0.94657 0.93224 0.91036 0.90807 0.92815 0.92816 0.92901 0.93862 0.93418 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.62 71.98 0.62 -3.08 15 2 C 0.08 2.97 1.16 3.67 0.00 2.98 15 3 C -0.14 -3.79 8.26 71.98 0.59 -3.20 15 4 C -0.13 -5.48 5.78 31.48 0.18 -5.30 15 5 C 0.01 0.63 2.80 -10.34 -0.03 0.61 15 6 H 0.00 0.00 8.12 -2.39 -0.02 -0.02 15 7 C -0.53 -30.00 8.45 25.60 0.22 -29.78 15 8 H 0.05 2.88 7.55 -2.91 -0.02 2.86 15 9 C 0.01 0.76 5.32 84.66 0.45 1.21 15 10 N -0.92 -54.36 13.03 21.45 0.28 -54.08 15 11 Si 0.95 44.18 29.55 68.60 2.03 46.21 15 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 15 C 0.07 3.47 6.69 86.56 0.58 4.04 15 16 N -0.67 -26.44 7.04 -458.00 -3.22 -29.67 15 17 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 19 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.05 1.39 8.11 -2.39 -0.02 1.37 15 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.05 2.29 7.21 -2.39 -0.02 2.27 15 24 H 0.05 2.12 7.69 -2.39 -0.02 2.10 15 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 26 H 0.04 2.26 8.06 -2.39 -0.02 2.24 15 27 H 0.05 2.42 8.05 -2.39 -0.02 2.40 15 28 H 0.33 12.22 8.38 -89.70 -0.75 11.46 15 Total: -1.00 -60.31 230.20 2.07 -58.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.37 Total: 11.82 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 2.62 Total: -32.53 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.94 Total: -83.74 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.31 2.07 -58.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118839.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.385 kcal (2) G-P(sol) polarization free energy of solvation -60.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds