Wall clock time and date at job start Mon Mar 30 2020 20:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00236 * 2 1 4 4 C 1.53001 * 109.46889 * 303.70305 * 3 2 1 5 5 C 1.50703 * 109.46802 * 63.70022 * 3 2 1 6 6 H 1.08001 * 120.00136 * 359.97438 * 5 3 2 7 7 C 1.37876 * 119.99831 * 180.02562 * 5 3 2 8 8 N 1.31517 * 119.99984 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47004 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47450 * 119.99564 * 9 7 5 12 12 H 1.48506 * 109.47248 * 239.99630 * 9 7 5 13 13 C 1.52996 * 109.47311 * 183.69697 * 3 2 1 14 14 C 1.53004 * 117.52005 * 345.62377 * 13 3 2 15 15 C 1.52997 * 60.00280 * 107.47876 * 14 13 3 16 16 H 1.09003 * 109.47192 * 305.76576 * 1 2 3 17 17 H 1.09000 * 109.47339 * 65.76422 * 1 2 3 18 18 H 1.09000 * 109.46978 * 185.76680 * 1 2 3 19 19 H 1.00902 * 111.00521 * 236.04581 * 2 1 3 20 20 H 1.09009 * 109.46559 * 299.99547 * 4 3 2 21 21 H 1.08990 * 109.47181 * 59.99743 * 4 3 2 22 22 H 1.08998 * 109.46800 * 180.02562 * 4 3 2 23 23 H 0.96996 * 120.00356 * 180.02562 * 8 7 5 24 24 H 1.09002 * 115.55246 * 199.91716 * 13 3 2 25 25 H 1.08996 * 117.49846 * 214.96988 * 14 13 3 26 26 H 1.08999 * 117.49468 * 359.97438 * 14 13 3 27 27 H 1.09000 * 117.50086 * 252.51533 * 15 14 13 28 28 H 1.08998 * 117.50048 * 107.48803 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.4310 2.1344 -1.2001 5 6 1.5878 2.0660 1.2738 6 1 0.9964 1.5413 2.0095 7 6 1.9690 3.3717 1.4994 8 7 2.6887 4.0108 0.6033 9 14 1.4630 4.2329 3.0780 10 1 0.6626 3.3029 3.9145 11 1 2.6766 4.6510 3.8246 12 1 0.6472 5.4295 2.7495 13 6 3.5221 1.3317 -0.0930 14 6 4.2119 -0.0081 0.1720 15 6 4.1391 0.5463 -1.2522 16 1 -0.3634 0.6007 0.8339 17 1 -0.3634 0.4218 -0.9371 18 1 -0.3633 -1.0225 0.1033 19 1 1.8307 -0.5261 -0.7814 20 1 1.7260 1.6320 -2.1214 21 1 0.3435 2.1627 -1.1337 22 1 1.8220 3.1518 -1.2003 23 1 2.9572 4.9292 0.7622 24 1 4.0367 2.2358 0.2326 25 1 5.1801 0.0146 0.6719 26 1 3.5780 -0.8614 0.4130 27 1 3.4573 0.0577 -1.9482 28 1 5.0594 0.9337 -1.6891 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:33 Heat of formation + Delta-G solvation = 29.365210 kcal Electronic energy + Delta-G solvation = -10338.285499 eV Core-core repulsion = 8583.284712 eV Total energy + Delta-G solvation = -1755.000787 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.81009 -33.79750 -32.35303 -28.38043 -25.28231 -24.34545 -21.51191 -21.18827 -18.52402 -16.00259 -15.08881 -14.85170 -13.77863 -13.28053 -12.64439 -12.24074 -12.06550 -11.22508 -11.18613 -10.83410 -10.69269 -10.50926 -10.42640 -10.00799 -9.69028 -9.42359 -8.95114 -8.54684 -8.29053 -7.12197 -5.97201 -4.02326 3.30673 3.38996 3.43748 4.43558 5.04892 5.31358 5.55690 5.92085 6.20291 6.25531 6.29315 6.42567 6.48972 6.70688 6.81705 6.88825 6.92939 7.12037 7.19128 7.55238 7.65874 7.80843 7.93427 8.21294 8.48790 8.81892 9.03554 9.62513 11.06718 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.046642 B = 0.020151 C = 0.017245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.171135 B = 1389.173553 C = 1623.268906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.687 5.687 3 C 0.260 3.740 4 C -0.164 4.164 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.087 4.087 14 C -0.188 4.188 15 C -0.215 4.215 16 H 0.071 0.929 17 H 0.009 0.991 18 H 0.039 0.961 19 H 0.312 0.688 20 H 0.007 0.993 21 H 0.029 0.971 22 H 0.089 0.911 23 H 0.258 0.742 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -3.847 -1.798 4.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.316 5.316 3 C 0.171 3.829 4 C -0.223 4.223 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.106 4.106 14 C -0.225 4.225 15 C -0.252 4.252 16 H 0.090 0.910 17 H 0.027 0.973 18 H 0.058 0.942 19 H 0.128 0.872 20 H 0.026 0.974 21 H 0.048 0.952 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.365 -3.734 -1.122 3.916 hybrid contribution -0.341 0.819 -0.199 0.909 sum -0.706 -2.915 -1.321 3.277 Atomic orbital electron populations 1.22042 0.89877 0.99147 1.00162 1.60789 1.06400 1.17261 1.47116 1.18101 0.88319 0.82655 0.93852 1.22395 0.98894 1.04754 0.96247 1.21055 1.32366 0.96206 1.02743 0.91985 1.24915 0.95246 0.97361 0.96655 1.69879 1.37606 1.11434 1.34063 0.86502 0.78267 0.79384 0.83618 1.19836 1.21102 1.21248 1.22609 0.96976 0.94314 0.96732 1.22806 1.01219 1.00861 0.97622 1.22861 1.02429 1.08096 0.91812 0.91046 0.97254 0.94189 0.87188 0.97422 0.95195 0.89224 0.93149 0.86115 0.91195 0.88555 0.90782 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.85 60.06 0.59 1.34 15 2 N -0.69 -15.01 5.18 -108.36 -0.56 -15.57 15 3 C 0.26 6.37 0.54 -132.75 -0.07 6.30 15 4 C -0.16 -3.97 7.79 37.16 0.29 -3.68 15 5 C -0.49 -13.13 7.32 -34.44 -0.25 -13.38 15 6 H 0.06 1.72 6.97 -52.49 -0.37 1.36 15 7 C 0.06 1.59 5.08 -17.82 -0.09 1.50 15 8 N -0.89 -24.47 9.56 55.43 0.53 -23.94 15 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 13 C -0.09 -2.08 4.68 -90.62 -0.42 -2.50 15 14 C -0.19 -3.90 9.75 -26.73 -0.26 -4.16 15 15 C -0.21 -4.34 9.42 -26.73 -0.25 -4.59 15 16 H 0.07 1.54 6.55 -51.93 -0.34 1.20 15 17 H 0.01 0.18 6.59 -51.93 -0.34 -0.16 15 18 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 19 H 0.31 6.30 6.93 -39.29 -0.27 6.03 15 20 H 0.01 0.15 7.70 -51.92 -0.40 -0.25 15 21 H 0.03 0.70 6.48 -51.93 -0.34 0.37 15 22 H 0.09 2.38 6.07 -51.93 -0.32 2.07 15 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 24 H 0.12 3.23 6.41 -51.93 -0.33 2.90 15 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.10 1.98 6.85 -51.93 -0.36 1.62 15 27 H 0.07 1.42 7.17 -51.93 -0.37 1.05 15 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 220.48 15.07 3.32 3.32 Total: -1.00 -27.10 220.48 -6.04 -33.14 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.84 Total: 6.03 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.47 Total: -19.18 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.03 Total: -39.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -27.10 -6.04 -33.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.503 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds