Wall clock time and date at job start Mon Mar 30 2020 20:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 111.00236 * 2 1 4 4 C 1.53001 * 109.46889 * 303.70305 * 3 2 1 5 5 C 1.50703 * 109.46802 * 63.70022 * 3 2 1 6 6 H 1.08001 * 120.00136 * 359.97438 * 5 3 2 7 7 C 1.37876 * 119.99831 * 180.02562 * 5 3 2 8 8 N 1.31517 * 119.99984 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47004 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47450 * 119.99564 * 9 7 5 12 12 H 1.48506 * 109.47248 * 239.99630 * 9 7 5 13 13 C 1.52996 * 109.47311 * 183.69697 * 3 2 1 14 14 C 1.53004 * 117.52005 * 345.62377 * 13 3 2 15 15 C 1.52997 * 60.00280 * 107.47876 * 14 13 3 16 16 H 1.09003 * 109.47192 * 305.76576 * 1 2 3 17 17 H 1.09000 * 109.47339 * 65.76422 * 1 2 3 18 18 H 1.09000 * 109.46978 * 185.76680 * 1 2 3 19 19 H 1.00902 * 111.00521 * 236.04581 * 2 1 3 20 20 H 1.09009 * 109.46559 * 299.99547 * 4 3 2 21 21 H 1.08990 * 109.47181 * 59.99743 * 4 3 2 22 22 H 1.08998 * 109.46800 * 180.02562 * 4 3 2 23 23 H 0.96996 * 120.00356 * 180.02562 * 8 7 5 24 24 H 1.09002 * 115.55246 * 199.91716 * 13 3 2 25 25 H 1.08996 * 117.49846 * 214.96988 * 14 13 3 26 26 H 1.08999 * 117.49468 * 359.97438 * 14 13 3 27 27 H 1.09000 * 117.50086 * 252.51533 * 15 14 13 28 28 H 1.08998 * 117.50048 * 107.48803 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.4310 2.1344 -1.2001 5 6 1.5878 2.0660 1.2738 6 1 0.9964 1.5413 2.0095 7 6 1.9690 3.3717 1.4994 8 7 2.6887 4.0108 0.6033 9 14 1.4630 4.2329 3.0780 10 1 0.6626 3.3029 3.9145 11 1 2.6766 4.6510 3.8246 12 1 0.6472 5.4295 2.7495 13 6 3.5221 1.3317 -0.0930 14 6 4.2119 -0.0081 0.1720 15 6 4.1391 0.5463 -1.2522 16 1 -0.3634 0.6007 0.8339 17 1 -0.3634 0.4218 -0.9371 18 1 -0.3633 -1.0225 0.1033 19 1 1.8307 -0.5261 -0.7814 20 1 1.7260 1.6320 -2.1214 21 1 0.3435 2.1627 -1.1337 22 1 1.8220 3.1518 -1.2003 23 1 2.9572 4.9292 0.7622 24 1 4.0367 2.2358 0.2326 25 1 5.1801 0.0146 0.6719 26 1 3.5780 -0.8614 0.4130 27 1 3.4573 0.0577 -1.9482 28 1 5.0594 0.9337 -1.6891 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:33 Heat of formation + Delta-G solvation = 12.698612 kcal Electronic energy + Delta-G solvation = -10339.008216 eV Core-core repulsion = 8583.284712 eV Total energy + Delta-G solvation = -1755.723505 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.59316 -35.53620 -34.32308 -30.24299 -27.30471 -26.07988 -23.29888 -22.83476 -20.42232 -17.88679 -16.92195 -16.76960 -15.58506 -15.00071 -14.43799 -14.11665 -13.70653 -13.13591 -13.01134 -12.68581 -12.54263 -12.36227 -12.08110 -12.02239 -11.47882 -11.22958 -10.81501 -10.34405 -10.24744 -8.86423 -8.01010 -6.11862 1.40907 1.44462 1.54380 2.46287 3.20524 3.40691 3.86025 4.25516 4.51652 4.56725 4.67624 4.82840 4.86796 4.95558 5.01057 5.18193 5.22715 5.30396 5.51776 5.67004 5.76498 5.83859 5.93598 6.39024 6.55357 7.00675 7.07872 7.56099 9.00843 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.046642 B = 0.020151 C = 0.017245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.171135 B = 1389.173553 C = 1623.268906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.689 5.689 3 C 0.258 3.742 4 C -0.153 4.153 5 C -0.501 4.501 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C -0.122 4.122 14 C -0.175 4.175 15 C -0.190 4.190 16 H 0.049 0.951 17 H 0.013 0.987 18 H 0.071 0.929 19 H 0.325 0.675 20 H 0.023 0.977 21 H 0.025 0.975 22 H 0.062 0.938 23 H 0.257 0.743 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -4.872 -2.063 5.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.319 5.319 3 C 0.168 3.832 4 C -0.212 4.212 5 C -0.540 4.540 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.142 4.142 14 C -0.212 4.212 15 C -0.227 4.227 16 H 0.068 0.932 17 H 0.031 0.969 18 H 0.090 0.910 19 H 0.142 0.858 20 H 0.042 0.958 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.359 -4.772 -1.393 4.984 hybrid contribution -0.348 1.112 -0.132 1.172 sum -0.707 -3.660 -1.526 4.028 Atomic orbital electron populations 1.22040 0.88799 1.00734 0.99418 1.60697 1.07481 1.15869 1.47856 1.17977 0.88969 0.83691 0.92549 1.22254 0.98421 1.03352 0.97210 1.21274 1.32321 0.96713 1.03688 0.93444 1.25516 0.95432 0.98016 0.99089 1.70003 1.38083 1.11421 1.35168 0.85665 0.77843 0.78343 0.80668 1.19796 1.20947 1.20936 1.22331 0.96539 0.94547 1.00766 1.22840 1.01232 0.98965 0.98134 1.22900 1.02543 1.05862 0.91436 0.93227 0.96851 0.91046 0.85830 0.95759 0.95581 0.91948 0.93311 0.89588 0.90112 0.88081 0.89327 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.85 127.69 1.26 2.77 15 2 N -0.69 -28.83 5.18 -496.75 -2.58 -31.41 15 3 C 0.26 12.46 0.54 2.78 0.00 12.46 15 4 C -0.15 -7.32 7.79 71.98 0.56 -6.76 15 5 C -0.50 -27.23 7.32 25.60 0.19 -27.04 15 6 H 0.05 2.65 6.97 -2.91 -0.02 2.63 15 7 C 0.02 0.99 5.08 84.65 0.43 1.42 15 8 N -0.91 -50.45 9.56 21.45 0.20 -50.25 15 9 Si 0.95 43.80 29.54 68.60 2.03 45.82 15 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 13 C -0.12 -5.74 4.68 -10.79 -0.05 -5.79 15 14 C -0.17 -6.86 9.75 30.59 0.30 -6.56 15 15 C -0.19 -7.20 9.42 30.60 0.29 -6.91 15 16 H 0.05 2.09 6.55 -2.39 -0.02 2.08 15 17 H 0.01 0.49 6.59 -2.39 -0.02 0.47 15 18 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 19 H 0.32 12.17 6.93 -89.69 -0.62 11.54 15 20 H 0.02 1.03 7.70 -2.38 -0.02 1.01 15 21 H 0.03 1.21 6.48 -2.39 -0.02 1.19 15 22 H 0.06 3.33 6.07 -2.39 -0.01 3.32 15 23 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 24 H 0.09 4.65 6.41 -2.39 -0.02 4.63 15 25 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.10 3.87 6.85 -2.39 -0.02 3.86 15 27 H 0.09 3.09 7.17 -2.39 -0.02 3.07 15 28 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 Total: -1.00 -56.59 220.48 3.15 -53.43 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.52 Total: 18.81 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.97 Total: -36.41 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -2.37 Total: -81.65 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -56.59 3.15 -53.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.133 kcal (2) G-P(sol) polarization free energy of solvation -56.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds