Wall clock time and date at job start Mon Mar 30 2020 20:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47157 * 2 1 4 4 H 1.09006 * 110.01260 * 53.88847 * 3 2 1 5 5 N 1.47440 * 109.89526 * 292.77398 * 3 2 1 6 6 C 1.47843 * 108.57097 * 241.58520 * 5 3 2 7 7 C 1.54910 * 104.79447 * 335.90007 * 6 5 3 8 8 C 1.54324 * 109.89129 * 175.00244 * 3 2 1 9 9 H 1.09002 * 110.84928 * 23.24093 * 8 3 2 10 10 C 1.50697 * 110.70455 * 260.07761 * 8 3 2 11 11 H 1.07991 * 120.00449 * 4.66648 * 10 8 3 12 12 C 1.37885 * 119.99686 * 184.94480 * 10 8 3 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99812 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99397 * 14 12 10 18 18 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46609 * 299.99792 * 1 2 3 20 20 H 1.08999 * 109.47284 * 59.99177 * 1 2 3 21 21 H 1.09002 * 109.46609 * 240.00208 * 2 1 3 22 22 H 1.08999 * 109.47284 * 120.00823 * 2 1 3 23 23 H 1.00904 * 110.99828 * 3.85119 * 5 3 2 24 24 H 1.09000 * 110.37668 * 217.07229 * 6 5 3 25 25 H 1.09005 * 110.46945 * 94.77630 * 6 5 3 26 26 H 1.08995 * 110.99180 * 278.97830 * 7 6 5 27 27 H 1.09002 * 111.02196 * 155.17368 * 7 6 5 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5952 1.9954 0.8275 5 7 1.7013 2.0944 -1.2783 6 6 2.9565 2.4857 -1.9544 7 6 3.9960 2.6169 -0.8135 8 6 3.5780 1.4556 0.1264 9 1 4.0033 0.5116 -0.2145 10 6 3.9934 1.7432 1.5461 11 1 3.2458 1.8305 2.3205 12 6 5.3279 1.9006 1.8555 13 7 6.2385 1.7943 0.9125 14 14 5.8423 2.2648 3.6139 15 1 5.3969 1.1589 4.4992 16 1 7.3207 2.3889 3.6815 17 1 5.2185 3.5369 4.0587 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.1518 1.4817 -1.8622 24 1 2.8308 3.4405 -2.4650 25 1 3.2645 1.7156 -2.6618 26 1 3.9039 3.5791 -0.3100 27 1 5.0089 2.4702 -1.1886 28 1 7.1772 1.9047 1.1302 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161854.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:37 Heat of formation + Delta-G solvation = -19.349476 kcal Electronic energy + Delta-G solvation = -10066.023285 eV Core-core repulsion = 8308.910071 eV Total energy + Delta-G solvation = -1757.113214 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.92909 -32.93097 -32.19588 -29.01228 -27.16798 -24.43714 -22.00771 -19.67610 -19.14948 -16.44346 -15.41016 -14.53104 -14.20587 -13.35031 -12.62655 -12.57591 -12.20954 -11.72828 -11.25820 -10.97852 -10.89974 -10.67063 -10.62596 -10.35348 -9.99656 -9.57409 -9.06193 -8.82319 -8.36239 -7.56771 -5.99751 -4.02189 3.33553 3.37883 3.40815 4.45441 5.16543 5.32780 5.57516 5.65869 5.75785 6.04857 6.18495 6.30513 6.33180 6.41292 6.50343 6.74162 6.78267 6.96638 7.26134 7.29648 7.65802 7.69271 7.94248 8.03291 8.22740 8.46166 8.98986 9.61461 11.10003 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.054833 B = 0.015714 C = 0.013177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.520959 B = 1781.454206 C = 2124.370446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.076 3.924 4 H 0.074 0.926 5 N -0.684 5.684 6 C 0.037 3.963 7 C -0.104 4.104 8 C 0.039 3.961 9 H 0.028 0.972 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 H 0.043 0.957 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.320 0.680 24 H 0.057 0.943 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -1.569 -2.617 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.032 4.032 4 H 0.093 0.907 5 N -0.314 5.314 6 C -0.092 4.092 7 C -0.142 4.142 8 C 0.019 3.981 9 H 0.046 0.954 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 H 0.062 0.938 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.135 0.865 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.042 -0.910 -2.369 6.553 hybrid contribution 0.750 -0.684 0.609 1.184 sum -5.292 -1.595 -1.760 5.800 Atomic orbital electron populations 1.21778 0.96768 1.00268 1.01649 1.21999 0.94865 0.98604 1.01849 1.22505 0.98502 0.90957 0.91280 0.90750 1.62139 1.18693 1.44684 1.05836 1.22936 0.90912 0.98254 0.97130 1.22596 0.96867 1.00362 0.94402 1.19865 0.88138 0.94504 0.95550 0.95367 1.21055 0.91942 1.48589 0.93245 0.92588 1.24979 0.96737 0.95247 0.97019 1.69955 1.00821 1.49989 1.32216 0.86673 0.77288 0.78911 0.85219 1.20314 1.21357 1.20253 0.93818 0.92885 0.92989 0.93187 0.91255 0.86479 0.92421 0.95663 0.92681 0.91162 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.79 37.16 0.36 -1.85 15 2 C -0.13 -2.46 5.13 -26.73 -0.14 -2.60 15 3 C 0.08 1.64 3.05 -66.73 -0.20 1.43 15 4 H 0.07 1.71 7.66 -51.93 -0.40 1.31 15 5 N -0.68 -13.45 7.26 -103.81 -0.75 -14.20 15 6 C 0.04 0.74 7.57 -2.30 -0.02 0.72 15 7 C -0.10 -2.52 5.75 -24.59 -0.14 -2.66 15 8 C 0.04 0.98 2.39 -89.95 -0.21 0.76 15 9 H 0.03 0.77 7.86 -51.93 -0.41 0.36 15 10 C -0.51 -14.16 8.50 -34.44 -0.29 -14.45 15 11 H 0.06 1.54 7.57 -52.49 -0.40 1.14 15 12 C 0.06 1.73 5.33 -17.82 -0.09 1.63 15 13 N -0.89 -25.81 12.12 55.43 0.67 -25.14 15 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 18 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.05 0.74 7.06 -51.93 -0.37 0.37 15 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.32 5.52 7.14 -39.29 -0.28 5.24 15 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.05 1.41 8.04 -51.93 -0.42 0.99 15 27 H 0.07 1.81 7.53 -51.93 -0.39 1.42 15 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 227.77 15.07 3.43 3.43 Total: -1.00 -28.31 227.77 -6.74 -35.05 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.33 Total: 1.37 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -0.74 Total: -17.00 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.08 Total: -39.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.31 -6.74 -35.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161854.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.700 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds