Wall clock time and date at job start Mon Mar 30 2020 20:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46327 * 2 1 4 4 H 1.08002 * 120.00299 * 240.02595 * 3 2 1 5 5 C 1.37884 * 119.99942 * 59.74154 * 3 2 1 6 6 N 1.31514 * 119.99698 * 0.28408 * 5 3 2 7 7 Si 1.86794 * 119.99837 * 180.27476 * 5 3 2 8 8 H 1.48496 * 109.47341 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46983 * 120.00379 * 7 5 3 10 10 H 1.48503 * 109.47491 * 240.00192 * 7 5 3 11 11 C 1.53037 * 109.46501 * 240.02241 * 2 1 3 12 12 C 1.53121 * 109.27511 * 299.17383 * 11 2 1 13 13 C 1.53117 * 109.15943 * 302.34247 * 12 11 2 14 14 C 1.53042 * 109.27629 * 57.65927 * 13 12 11 15 15 N 1.46839 * 109.52094 * 300.81463 * 14 13 12 16 16 H 1.09004 * 109.47459 * 60.00080 * 1 2 3 17 17 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 18 18 H 1.09008 * 109.47126 * 299.99935 * 1 2 3 19 19 H 0.97005 * 119.99651 * 179.97438 * 6 5 3 20 20 H 1.09005 * 109.50125 * 59.11191 * 11 2 1 21 21 H 1.08994 * 109.50593 * 179.23501 * 11 2 1 22 22 H 1.08999 * 109.52209 * 62.24819 * 12 11 2 23 23 H 1.09001 * 109.52301 * 182.43810 * 12 11 2 24 24 H 1.09000 * 109.50188 * 177.59387 * 13 12 11 25 25 H 1.08991 * 109.50508 * 297.71439 * 13 12 11 26 26 H 1.08999 * 109.46336 * 60.83962 * 14 13 12 27 27 H 1.08998 * 109.45875 * 180.80417 * 14 13 12 28 28 H 1.00900 * 111.00491 * 297.64822 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0321 1.4209 0.0000 4 1 2.6526 1.7744 -0.8102 5 6 1.6945 2.2714 1.0314 6 7 0.9389 1.8410 2.0180 7 14 2.3106 4.0348 1.0275 8 1 3.1357 4.2682 -0.1848 9 1 1.1520 4.9639 1.0236 10 1 3.1332 4.2746 2.2404 11 6 2.0399 -0.7210 -1.2499 12 6 1.5441 -2.1696 -1.2355 13 6 2.0265 -2.8532 0.0469 14 6 1.5169 -2.0703 1.2592 15 7 2.0190 -0.6918 1.1995 16 1 -0.3634 0.5138 -0.8900 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3634 0.5139 0.8901 19 1 0.7016 2.4392 2.7438 20 1 1.6638 -0.2164 -2.1399 21 1 3.1298 -0.7095 -1.2574 22 1 0.4546 -2.1820 -1.2672 23 1 1.9407 -2.6990 -2.1018 24 1 1.6409 -3.8720 0.0833 25 1 3.1161 -2.8752 0.0597 26 1 0.4270 -2.0606 1.2532 27 1 1.8706 -2.5464 2.1737 28 1 3.0269 -0.6717 1.2427 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316740.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:47 Heat of formation + Delta-G solvation = -26.511891 kcal Electronic energy + Delta-G solvation = -10419.350059 eV Core-core repulsion = 8661.926260 eV Total energy + Delta-G solvation = -1757.423800 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.87531 -34.88745 -32.15426 -32.05493 -27.99490 -26.94059 -23.81454 -22.51830 -19.69542 -18.40873 -16.68456 -15.93695 -15.51273 -15.29808 -14.73176 -13.99364 -13.89406 -13.14269 -12.80020 -12.75396 -12.43435 -12.35930 -12.08556 -11.92955 -11.68687 -11.27862 -11.10629 -10.55329 -10.34211 -8.44241 -7.83330 -6.08911 1.43274 1.46737 1.55676 2.51047 3.29855 4.01377 4.07639 4.25566 4.36561 4.59644 4.75680 4.86014 4.97025 5.05469 5.09919 5.17491 5.29973 5.36424 5.38982 5.48327 5.59066 5.78463 6.16282 6.45226 6.76819 7.23180 7.27657 7.63236 9.11988 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076495 B = 0.016592 C = 0.015662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.950377 B = 1687.177625 C = 1787.329416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.232 3.768 3 C -0.546 4.546 4 H 0.041 0.959 5 C 0.041 3.959 6 N -0.870 5.870 7 Si 0.939 3.061 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.136 4.136 12 C -0.114 4.114 13 C -0.146 4.146 14 C 0.052 3.948 15 N -0.665 5.665 16 H 0.020 0.980 17 H 0.031 0.969 18 H 0.057 0.943 19 H 0.252 0.748 20 H 0.043 0.957 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -6.169 -3.176 7.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.143 3.857 3 C -0.585 4.585 4 H 0.060 0.940 5 C -0.162 4.162 6 N -0.506 5.506 7 Si 0.766 3.234 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.175 4.175 12 C -0.152 4.152 13 C -0.185 4.185 14 C -0.078 4.078 15 N -0.293 5.293 16 H 0.039 0.961 17 H 0.050 0.950 18 H 0.076 0.924 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.557 -5.858 -2.581 6.425 hybrid contribution 0.797 0.740 -0.596 1.240 sum 1.354 -5.118 -3.177 6.174 Atomic orbital electron populations 1.21717 0.97883 0.97757 1.00268 1.18447 0.91896 0.91062 0.84304 1.21320 1.33165 0.96687 1.07317 0.94041 1.25545 0.94774 1.00712 0.95213 1.70179 1.35470 1.35089 1.09812 0.85843 0.78071 0.81911 0.77619 1.19862 1.20986 1.20973 1.22190 0.99112 0.96121 1.00117 1.21568 1.00495 0.95275 0.97836 1.22201 1.00465 0.99696 0.96172 1.22062 0.99727 0.89487 0.96492 1.60714 1.12763 1.12669 1.43133 0.96091 0.94982 0.92401 0.93904 0.93773 0.94114 0.92493 0.91600 0.90567 0.92561 0.92765 0.91839 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 7.64 71.98 0.55 -5.24 15 2 C 0.23 11.33 0.54 2.80 0.00 11.34 15 3 C -0.55 -30.05 8.16 25.60 0.21 -29.85 15 4 H 0.04 2.30 7.74 -2.91 -0.02 2.28 15 5 C 0.04 2.27 5.23 84.66 0.44 2.71 15 6 N -0.87 -49.91 10.80 21.45 0.23 -49.68 15 7 Si 0.94 43.91 29.54 68.60 2.03 45.93 15 8 H -0.27 -12.60 7.11 99.48 0.71 -11.90 15 9 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 11 C -0.14 -5.66 4.82 30.65 0.15 -5.51 15 12 C -0.11 -3.89 5.69 30.67 0.17 -3.71 15 13 C -0.15 -4.66 6.08 30.65 0.19 -4.47 15 14 C 0.05 2.01 6.26 86.33 0.54 2.55 15 15 N -0.66 -31.21 5.62 -474.02 -2.66 -33.87 15 16 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 17 H 0.03 1.39 4.80 -2.39 -0.01 1.38 15 18 H 0.06 3.19 6.06 -2.38 -0.01 3.17 15 19 H 0.25 13.89 8.31 -92.70 -0.77 13.12 15 20 H 0.04 1.85 8.14 -2.38 -0.02 1.83 15 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.06 1.96 6.56 -2.39 -0.02 1.94 15 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.05 2.18 6.19 -2.39 -0.01 2.16 15 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.32 14.74 8.79 -89.69 -0.79 13.96 15 Total: -1.00 -58.34 217.12 2.19 -56.15 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.35 Total: 13.65 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 2.25 Total: -32.18 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.43 Total: -83.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -58.34 2.19 -56.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316740.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.633 kcal (2) G-P(sol) polarization free energy of solvation -58.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds