Wall clock time and date at job start Mon Mar 30 2020 20:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00182 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46823 * 299.99313 * 3 2 1 6 6 H 1.48494 * 109.47477 * 59.99574 * 3 2 1 7 7 C 1.37882 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99829 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47380 * 300.00214 * 9 7 2 11 11 C 1.52999 * 109.47088 * 60.00166 * 9 7 2 12 12 N 1.46902 * 109.47289 * 175.00113 * 11 9 7 13 13 N 1.46899 * 109.47075 * 180.02562 * 9 7 2 14 14 C 1.46902 * 111.00033 * 155.00236 * 13 9 7 15 15 C 1.53000 * 117.50126 * 205.00080 * 14 13 9 16 16 C 1.52997 * 117.50071 * 136.37312 * 14 13 9 17 17 H 0.97001 * 119.99937 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46904 * 295.00092 * 11 9 7 19 19 H 1.08997 * 109.47041 * 54.99749 * 11 9 7 20 20 H 1.00900 * 110.99917 * 56.04641 * 12 11 9 21 21 H 1.00902 * 110.99784 * 180.02562 * 12 11 9 22 22 H 1.00896 * 111.00296 * 31.04766 * 13 9 7 23 23 H 1.09002 * 115.55860 * 350.68531 * 14 13 9 24 24 H 1.08990 * 117.49990 * 145.01711 * 15 14 13 25 25 H 1.09004 * 117.49237 * 359.97438 * 15 14 13 26 26 H 1.08999 * 117.49685 * 0.02562 * 16 14 13 27 27 H 1.08999 * 117.52022 * 214.96909 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 6 0.3709 -2.5811 -1.2472 12 7 -0.2715 -3.9008 -1.3079 13 7 2.2055 -3.6157 0.0027 14 6 1.6029 -4.8231 0.5833 15 6 2.5471 -5.8591 1.1965 16 6 1.8507 -6.1515 -0.1342 17 1 -0.4850 0.8401 -0.0004 18 1 -0.3944 -1.8061 -1.2037 19 1 0.9858 -2.4350 -2.1352 20 1 -0.7958 -4.0868 -0.4662 21 1 -0.8583 -3.9800 -2.1249 22 1 3.0539 -3.3658 0.4883 23 1 0.6328 -4.6819 1.0599 24 1 2.1982 -6.3994 2.0765 25 1 3.6155 -5.6450 1.1687 26 1 2.4613 -6.1296 -1.0368 27 1 1.0441 -6.8845 -0.1296 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260647708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:33 Heat of formation + Delta-G solvation = 24.577916 kcal Electronic energy + Delta-G solvation = -10022.849207 eV Core-core repulsion = 8202.214917 eV Total energy + Delta-G solvation = -1820.634290 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.20037 -34.67232 -32.13430 -30.84174 -26.48484 -23.66873 -21.69305 -20.45971 -19.66567 -16.59294 -15.27285 -14.67229 -14.29639 -13.97549 -13.55403 -12.85356 -12.13780 -11.87113 -11.23727 -10.99252 -10.89593 -10.68757 -10.28176 -10.16345 -9.70821 -9.47276 -9.00559 -8.56416 -7.44914 -6.99989 -6.08935 -4.15467 3.25627 3.33674 3.38420 4.35828 4.63767 5.18104 5.22985 5.61901 5.73868 5.89417 6.14513 6.20662 6.45439 6.62644 6.82907 6.90901 7.00743 7.40207 7.73274 7.76217 8.00855 8.32749 8.46598 8.50682 8.73856 9.01149 9.50894 10.96391 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.066697 B = 0.013633 C = 0.011964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.707112 B = 2053.340111 C = 2339.729113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.223 3.777 10 H -0.001 1.001 11 C 0.075 3.925 12 N -0.845 5.845 13 N -0.648 5.648 14 C 0.064 3.936 15 C -0.223 4.223 16 C -0.160 4.160 17 H 0.261 0.739 18 H 0.055 0.945 19 H 0.048 0.952 20 H 0.320 0.680 21 H 0.314 0.686 22 H 0.328 0.672 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -5.856 0.667 5.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.115 3.885 10 H 0.017 0.983 11 C -0.055 4.055 12 N -0.371 5.371 13 N -0.278 5.278 14 C -0.048 4.048 15 C -0.261 4.261 16 C -0.199 4.199 17 H 0.071 0.929 18 H 0.073 0.927 19 H 0.067 0.933 20 H 0.130 0.870 21 H 0.124 0.876 22 H 0.147 0.853 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.287 -6.146 -0.035 6.280 hybrid contribution -0.545 1.678 0.947 2.002 sum 0.742 -4.469 0.912 4.621 Atomic orbital electron populations 1.69908 1.05972 1.26583 1.50579 1.24952 0.94925 0.99358 0.94770 0.86423 0.80118 0.83236 0.77547 1.19652 1.20940 1.21056 1.21324 0.93345 0.90279 1.50970 0.91897 1.19128 0.89750 0.86988 0.92682 0.98350 1.21954 0.97291 0.86985 0.99296 1.59036 1.37756 1.34887 1.05431 1.60249 1.07627 1.04137 1.55804 1.22144 0.96263 0.87980 0.98366 1.23302 0.98772 1.06815 0.97226 1.22825 1.02079 1.00226 0.94745 0.92941 0.92721 0.93308 0.86992 0.87603 0.85330 0.89916 0.90143 0.89540 0.89271 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 11.37 55.43 0.63 -24.51 15 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 15 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.52 -14.25 8.59 -34.44 -0.30 -14.54 15 8 H 0.06 1.71 7.62 -52.49 -0.40 1.31 15 9 C 0.22 5.66 2.36 -68.86 -0.16 5.49 15 10 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 15 11 C 0.08 1.84 6.18 -3.82 -0.02 1.81 15 12 N -0.84 -17.07 8.06 -10.37 -0.08 -17.15 15 13 N -0.65 -14.47 6.50 -100.95 -0.66 -15.13 15 14 C 0.06 1.24 4.61 -67.71 -0.31 0.93 15 15 C -0.22 -3.62 10.33 -26.73 -0.28 -3.90 15 16 C -0.16 -2.73 10.46 -26.73 -0.28 -3.01 15 17 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 18 H 0.05 1.46 6.22 -51.93 -0.32 1.13 15 19 H 0.05 1.26 8.14 -51.93 -0.42 0.84 15 20 H 0.32 6.24 8.19 -39.29 -0.32 5.92 15 21 H 0.31 5.68 9.08 -39.29 -0.36 5.32 15 22 H 0.33 7.20 8.18 -39.29 -0.32 6.88 15 23 H 0.08 1.66 6.92 -51.93 -0.36 1.30 15 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.09 1.60 8.14 -51.93 -0.42 1.17 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 227.42 15.07 3.43 3.43 Total: -1.00 -27.79 227.42 -6.87 -34.66 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -3.72 Total: 14.21 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.44 Total: -11.62 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.11 Total: -56.79 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.79 -6.87 -34.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260647708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.234 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds