Wall clock time and date at job start Mon Mar 30 2020 20:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99459 * 2 1 4 4 C 1.54320 * 109.88178 * 121.09133 * 2 1 3 5 5 C 1.55157 * 102.94296 * 97.22630 * 4 2 1 6 6 H 1.09002 * 111.00619 * 277.39065 * 5 4 2 7 7 N 1.46905 * 111.00581 * 153.57574 * 5 4 2 8 8 C 1.54905 * 101.57926 * 35.50133 * 5 4 2 9 9 N 1.47025 * 109.88301 * 238.90123 * 2 1 3 10 10 C 1.36935 * 125.64756 * 59.57423 * 9 2 1 11 11 H 1.07994 * 119.99899 * 359.97438 * 10 9 2 12 12 C 1.38811 * 119.99900 * 179.97438 * 10 9 2 13 13 N 1.31622 * 119.99657 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00184 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47178 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47009 * 120.00267 * 14 12 10 17 17 H 1.48502 * 109.47368 * 240.00263 * 14 12 10 18 18 H 1.09000 * 109.47355 * 298.90832 * 1 2 3 19 19 H 1.08997 * 109.47085 * 58.90965 * 1 2 3 20 20 H 1.09001 * 109.47258 * 178.90579 * 1 2 3 21 21 H 1.08996 * 110.72259 * 338.86541 * 4 2 1 22 22 H 1.09000 * 110.72369 * 215.59189 * 4 2 1 23 23 H 1.00901 * 110.99869 * 180.02562 * 7 5 4 24 24 H 1.00896 * 110.99543 * 303.95487 * 7 5 4 25 25 H 1.09008 * 110.37093 * 81.83122 * 8 5 4 26 26 H 1.09005 * 110.36900 * 204.14799 * 8 5 4 27 27 H 0.97010 * 119.99705 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 2.3519 -2.1694 0.6925 6 1 1.4453 -2.7738 0.6612 7 7 3.3966 -2.8329 1.4840 8 6 2.8568 -1.8498 -0.7366 9 7 2.0300 -0.7141 -1.1839 10 6 1.7715 -0.3792 -2.4862 11 1 1.1512 0.4758 -2.7109 12 6 2.3068 -1.1385 -3.5176 13 7 3.0633 -2.1802 -3.2436 14 14 1.9536 -0.6821 -5.2941 15 1 1.0843 0.5212 -5.3326 16 1 3.2308 -0.3920 -5.9939 17 1 1.2655 -1.8122 -5.9682 18 1 -0.3634 0.4968 0.8996 19 1 -0.3633 0.5307 -0.8800 20 1 -0.3634 -1.0275 -0.0196 21 1 1.2918 -0.7889 2.0201 22 1 2.9656 -0.2830 1.6183 23 1 3.5900 -3.7562 1.1259 24 1 4.2362 -2.2743 1.5151 25 1 3.9092 -1.5667 -0.7127 26 1 2.7089 -2.7081 -1.3921 27 1 3.4371 -2.7112 -3.9643 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575589577.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:55 Heat of formation + Delta-G solvation = 17.959369 kcal Electronic energy + Delta-G solvation = -10294.945978 eV Core-core repulsion = 8474.024686 eV Total energy + Delta-G solvation = -1820.921292 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.89795 -33.38536 -32.13508 -29.12656 -27.64230 -24.98693 -23.45301 -19.92028 -19.11992 -16.75384 -15.80638 -14.77145 -14.19984 -13.55146 -12.83285 -12.57508 -12.14184 -11.91354 -11.55658 -11.36638 -10.87379 -10.79395 -10.32401 -10.20360 -9.83390 -9.73282 -9.55512 -8.66880 -8.05349 -6.82868 -5.64245 -3.06050 3.39264 3.44778 3.47281 4.48971 5.09868 5.44003 5.59347 5.65340 5.81686 5.95114 6.20341 6.28307 6.34086 6.49745 6.63004 6.76861 6.88889 7.18142 7.35432 7.63841 7.74201 7.81743 8.00245 8.35985 9.22842 9.84748 10.49931 11.39088 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.058958 B = 0.016924 C = 0.013766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.804336 B = 1654.042538 C = 2033.577897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.030 0.970 4 C -0.116 4.116 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.841 5.841 8 C 0.126 3.874 9 N -0.597 5.597 10 C -0.215 4.215 11 H 0.078 0.922 12 C -0.015 4.015 13 N -0.925 5.925 14 Si 0.914 3.086 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 H 0.038 0.962 19 H 0.049 0.951 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.336 0.664 24 H 0.334 0.666 25 H 0.008 0.992 26 H 0.103 0.897 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 0.888 5.850 6.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.048 0.952 4 C -0.155 4.155 5 C -0.055 4.055 6 H 0.097 0.903 7 N -0.368 5.368 8 C -0.001 4.001 9 N -0.322 5.322 10 C -0.344 4.344 11 H 0.096 0.904 12 C -0.210 4.210 13 N -0.574 5.574 14 Si 0.744 3.256 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 H 0.057 0.943 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.026 0.974 26 H 0.121 0.879 27 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.855 0.890 6.248 6.578 hybrid contribution 0.433 0.275 -1.899 1.968 sum -1.422 1.165 4.348 4.721 Atomic orbital electron populations 1.22205 0.98224 1.01072 0.99660 1.20949 0.92490 0.94856 0.87235 0.95203 1.22584 1.00149 0.95918 0.96838 1.22945 0.94719 0.94004 0.93811 0.90330 1.59044 1.13175 1.06976 1.57637 1.22664 0.92104 0.93779 0.91561 1.44484 1.56927 1.30392 1.00386 1.19134 1.25096 1.09349 0.80824 0.90418 1.24788 1.00066 0.98075 0.98090 1.69817 1.38144 1.19587 1.29878 0.86000 0.77384 0.77488 0.84679 1.20529 1.21830 1.21783 0.94322 0.93169 0.93161 0.91922 0.92231 0.85216 0.85448 0.97442 0.87881 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.09 37.16 0.34 -2.60 15 2 C 0.15 3.26 3.74 -66.95 -0.25 3.01 15 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 4 C -0.12 -2.18 6.17 -24.90 -0.15 -2.33 15 5 C 0.06 1.14 4.20 -65.56 -0.28 0.87 15 6 H 0.08 1.60 8.14 -51.93 -0.42 1.18 15 7 N -0.84 -14.15 9.40 -2.85 -0.03 -14.18 15 8 C 0.13 3.09 5.56 -2.53 -0.01 3.07 15 9 N -0.60 -15.48 3.14 -162.57 -0.51 -15.99 15 10 C -0.22 -6.07 9.82 -15.06 -0.15 -6.21 15 11 H 0.08 2.12 7.74 -52.49 -0.41 1.72 15 12 C -0.02 -0.44 5.49 -17.43 -0.10 -0.53 15 13 N -0.92 -27.27 10.09 55.49 0.56 -26.71 15 14 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 16 H -0.29 -7.18 7.11 56.52 0.40 -6.77 15 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 18 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.05 1.00 7.93 -51.93 -0.41 0.59 15 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.06 1.06 7.83 -51.93 -0.41 0.65 15 22 H 0.06 1.07 8.09 -51.93 -0.42 0.65 15 23 H 0.34 5.27 9.08 -39.29 -0.36 4.91 15 24 H 0.33 5.36 8.89 -39.29 -0.35 5.01 15 25 H 0.01 0.20 8.08 -51.92 -0.42 -0.22 15 26 H 0.10 2.85 5.88 -51.93 -0.31 2.55 15 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 221.97 15.07 3.35 3.35 Total: -1.00 -29.67 221.97 -6.16 -35.83 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -3.90 Total: 5.09 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.60 Total: -4.72 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.02 Total: -56.88 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.67 -6.16 -35.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589577.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.790 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds