Wall clock time and date at job start Mon Mar 30 2020 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.00193 * 2 1 4 4 C 1.54316 * 109.98661 * 238.97116 * 2 1 3 5 5 C 1.55160 * 102.86053 * 263.04973 * 4 2 1 6 6 H 1.08991 * 111.00266 * 82.37937 * 5 4 2 7 7 N 1.46902 * 111.03135 * 206.21421 * 5 4 2 8 8 C 1.54906 * 101.58076 * 324.29869 * 5 4 2 9 9 N 1.47027 * 109.88431 * 121.09515 * 2 1 3 10 10 C 1.36940 * 125.64411 * 300.51288 * 9 2 1 11 11 H 1.07998 * 119.99866 * 19.56492 * 10 9 2 12 12 C 1.38804 * 119.99682 * 199.55868 * 10 9 2 13 13 N 1.31627 * 120.00132 * 28.19161 * 12 10 9 14 14 Si 1.86798 * 120.00225 * 208.18368 * 12 10 9 15 15 H 1.48504 * 109.47394 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47200 * 60.00405 * 14 12 10 17 17 H 1.48503 * 109.47463 * 300.00492 * 14 12 10 18 18 H 1.09002 * 109.46902 * 300.35802 * 1 2 3 19 19 H 1.09000 * 109.47084 * 60.35678 * 1 2 3 20 20 H 1.08998 * 109.47543 * 180.35810 * 1 2 3 21 21 H 1.09002 * 110.92552 * 144.63640 * 4 2 1 22 22 H 1.08995 * 110.74133 * 21.37497 * 4 2 1 23 23 H 1.00903 * 110.99751 * 173.67217 * 7 5 4 24 24 H 1.00899 * 111.00350 * 297.61959 * 7 5 4 25 25 H 1.08997 * 110.37101 * 278.16857 * 8 5 4 26 26 H 1.09007 * 110.36370 * 155.84775 * 8 5 4 27 27 H 0.96997 * 119.99946 * 5.62598 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7475 -1.2427 5 6 2.3475 -2.1693 -0.6932 6 1 1.4382 -2.7694 -0.6628 7 7 3.3899 -2.8375 -1.4837 8 6 2.8523 -1.8530 0.7367 9 7 2.0301 -0.7141 1.1839 10 6 1.7701 -0.3799 2.4863 11 1 0.9251 0.2492 2.7240 12 6 2.5927 -0.8499 3.5007 13 7 3.8578 -1.1155 3.2524 14 14 1.9046 -1.1053 5.2184 15 1 2.9783 -1.6093 6.1120 16 1 0.7983 -2.0946 5.1665 17 1 1.3901 0.1854 5.7427 18 1 -0.3633 0.5194 0.8868 19 1 -0.3633 0.5083 -0.8932 20 1 -0.3634 -1.0276 0.0064 21 1 2.9708 -0.2849 -1.6168 22 1 1.2973 -0.7834 -2.0231 23 1 3.6513 -3.7183 -1.0665 24 1 3.0932 -2.9644 -2.4397 25 1 3.9059 -1.5746 0.7143 26 1 2.6997 -2.7112 1.3914 27 1 4.2358 -0.9065 2.3840 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575589582.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:58 Heat of formation + Delta-G solvation = 14.650477 kcal Electronic energy + Delta-G solvation = -10291.748130 eV Core-core repulsion = 8470.683354 eV Total energy + Delta-G solvation = -1821.064776 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.03962 -33.60559 -32.24536 -29.15079 -27.79704 -25.06353 -23.32422 -19.81756 -19.35263 -17.28019 -15.43245 -14.89624 -14.52184 -13.74779 -13.30502 -12.95234 -12.18817 -11.94335 -11.77115 -11.51578 -10.65151 -10.51599 -10.23150 -10.04884 -9.96411 -9.90298 -9.41257 -8.37422 -8.29472 -6.85075 -6.02585 -3.08446 3.53015 3.56859 3.74990 4.60919 4.85101 5.30020 5.41449 5.43621 5.73784 5.76098 6.02910 6.17110 6.22003 6.43268 6.49779 6.59647 6.82385 6.94722 7.07786 7.17928 7.58903 7.76698 7.91815 8.57584 9.11387 9.89686 10.47643 11.29497 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056555 B = 0.016889 C = 0.014108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.977359 B = 1657.487540 C = 1984.248148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.033 0.967 4 C -0.117 4.117 5 C 0.065 3.935 6 H 0.038 0.962 7 N -0.840 5.840 8 C 0.155 3.845 9 N -0.596 5.596 10 C -0.335 4.335 11 H 0.063 0.937 12 C -0.027 4.027 13 N -0.915 5.915 14 Si 1.063 2.937 15 H -0.285 1.285 16 H -0.295 1.295 17 H -0.293 1.293 18 H 0.051 0.949 19 H 0.038 0.962 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.339 0.661 24 H 0.333 0.667 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -1.886 -7.353 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.051 0.949 4 C -0.156 4.156 5 C -0.047 4.047 6 H 0.055 0.945 7 N -0.369 5.369 8 C 0.029 3.971 9 N -0.322 5.322 10 C -0.462 4.462 11 H 0.081 0.919 12 C -0.229 4.229 13 N -0.555 5.555 14 Si 0.893 3.107 15 H -0.211 1.211 16 H -0.222 1.222 17 H -0.220 1.220 18 H 0.071 0.929 19 H 0.057 0.943 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.151 0.849 24 H 0.144 0.856 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.368 -1.759 -5.531 6.711 hybrid contribution -1.170 -0.151 -1.676 2.049 sum -4.538 -1.910 -7.207 8.728 Atomic orbital electron populations 1.22165 0.98266 1.00738 0.99860 1.20897 0.92570 0.94988 0.86959 0.94897 1.22620 1.00336 0.95500 0.97096 1.22637 0.91901 0.94197 0.95926 0.94451 1.58636 1.43851 1.29019 1.05383 1.21454 0.94971 0.90896 0.89758 1.44482 1.59371 1.27381 1.01015 1.19681 1.10304 1.34697 0.81563 0.91914 1.25754 0.93911 1.00281 1.02947 1.70759 1.10756 1.48854 1.25181 0.83548 0.75124 0.76259 0.75756 1.21107 1.22247 1.22022 0.92939 0.94314 0.93495 0.91082 0.92391 0.84883 0.85592 0.94501 0.94043 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.11 37.16 0.34 -2.59 15 2 C 0.15 3.36 3.74 -66.96 -0.25 3.11 15 3 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 4 C -0.12 -2.17 6.19 -24.90 -0.15 -2.32 15 5 C 0.07 1.25 4.18 -65.56 -0.27 0.98 15 6 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 7 N -0.84 -13.40 9.37 -2.85 -0.03 -13.43 15 8 C 0.16 3.80 5.08 -2.53 -0.01 3.79 15 9 N -0.60 -15.70 3.01 -162.58 -0.49 -16.19 15 10 C -0.33 -9.71 9.62 -15.06 -0.14 -9.85 15 11 H 0.06 1.81 7.50 -52.49 -0.39 1.42 15 12 C -0.03 -0.79 5.10 -17.43 -0.09 -0.88 15 13 N -0.92 -28.51 13.01 55.49 0.72 -27.79 15 14 Si 1.06 25.98 30.00 -169.99 -5.10 20.88 15 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 15 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 18 H 0.05 1.07 7.60 -51.93 -0.39 0.68 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.06 0.92 7.84 -51.93 -0.41 0.51 15 23 H 0.34 5.00 9.07 -39.29 -0.36 4.64 15 24 H 0.33 4.34 9.08 -39.29 -0.36 3.99 15 25 H 0.04 0.99 6.80 -51.93 -0.35 0.64 15 26 H 0.04 1.10 8.08 -51.93 -0.42 0.68 15 27 H 0.27 8.52 6.18 -40.82 -0.25 8.27 15 LS Contribution 222.57 15.07 3.35 3.35 Total: -1.00 -31.59 222.57 -5.97 -37.56 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.84 Total: 3.39 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.59 Total: -7.77 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.21 Total: -57.41 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.88 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.59 -5.97 -37.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589582.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.206 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds